Stabilities and properties of complexes pairing hydroperoxyl radical with monohalomethanes

UMP2/aug-cc-pvdz calculations are used to analyze the interaction between hydroperoxyl radical (HOO) and CH(3)X (X = F, Cl, Br). Two minima are located on the potential energy surface of each complex. The more strongly bound contains a OH...X bond, along with CH...O; only CH...O bonds occur in the less stable minimum. Binding energies of the dominant minimum lie in the range of 20-24 kJ/mol, with X = F the most strongly bound. Analysis of the perturbations of the covalent bond lengths within each subunit caused by complexation, coupled with vibrational frequencies and charge transfers, opens a window into the nature of the interactions.     

Competitive interaction between halogen and hydrogen bonds in NH2Br‐HOX (X = F,Cl, and Br) complex

The NH₂Br‐HOX (X = F, Cl, and Br) complexes have been investigated with quantum chemical calculations at the MP2/aug‐cc‐pVTZ level. Five isomers are observed for the Cl and Br complexes, whereas only two isomers are found for the F complex. The geometrical, energetic, and spectroscopic parameters have been analyzed for these complexes. The hydrogen‐bonded complexes are more stable than the halogen‐bonded ones. In most complexes, the associated O? H and O? X bonds are elongated and show a red shift, whereas the distant bonds are contracted and exhibit a blue shift. The complexes have been analyzed with natural bond orbital and atoms in molecules. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

α‐Halogenoacetanilides as Hydrogen‐Bonding Organocatalysts that Activate Carbonyl Bonds: Fluorine versus Chlorine and Bromine

α‐Halogenoacetanilides (X=F, Cl, Br) were examined as H‐bonding organocatalysts designed for the double activation of C?O bonds through NH and CH donor groups. Depending on the halide substituents, the double H‐bond involved a nonconventional C?H???O interaction with either a H?CX_n (n=1–2, X=Cl, Br) or a H?C_Ar bond (X=F), as shown in the solid‐state crystal structures and by molecular modeling. In addition, the catalytic properties of α‐halogenoacetanilides were evaluated in the ring‐opening polymerization of lactide, in the presence of a tertiary amine as cocatalyst. The α‐dichloro‐ and α‐dibromoacetanilides containing electron‐deficient aromatic groups afforded the most attractive double H‐bonding properties towards C?O bonds, with a N?H???O???H?CX₂ interaction.     

Computational studies of σ-type weak interactions between NCO/NCS radicals and XY(X = H,Cl;Y = F,Cl,and Br)

The triatomic radicals NCO and NCS are of interest in atmospheric chemistry,and both the ends of these radicals can potentially serve as electron donors during the formation of σ-type hydrogen/halogen bonds with electron acceptors XY(X = H,Cl;Y = F,Cl,and Br).The geometries of the weakly bonded systems NCO/NCS···XY were determined at the MP2/aug-cc-pVDZ level of calculation.The results obtained indicate that the geometries in which the hydrogen/halogen atom is bonded at the N atom are more stable than those where it is bonded at the O/S atom,and that it is the molecular electrostatic potential(MEP)-not the electronegativity-that determines the stability of the hydrogen/halogen bond.For the same electron donor(N or O/S) in the triatomic radical and the same X atom in XY,the bond strength decreases in the order Y = F > Cl > Br.In the hydrogen/halogen bond formation process for all of the complexes studied in this work,transfer of spin electron density from the electron donor to the electron acceptor is negligible,but spin density rearranges within the triatomic radicals,being transferred to the terminal atom not interacting with XY.     

Halogen bonding in mono- and dihydrated halobenzene

Density functional theory calculations were performed on halogen-bonded and hydrogen-bonded systems consisting of a halobenzene (XPh; X = F, Cl, Br, I, and At) and one or two water molecules, using the M06-2X density functional with the 6-31+G(d) (for C, H, F, Cl, and Br) and aug-cc-pVDZ-PP (for I, At) basis sets. The counterpoise procedure was performed to counteract the effect of basis set superposition error. The results show halogen bonds form in the XPh-H₂O system when X > Cl. There is a trend toward stronger halogen bonding as the halogen group is descended, as assessed by interaction energy and X•••O_w internuclear separation (where O_w is the water oxygen). For all XPh-H₂O systems hydrogen-bonded systems exist, containing a combination of CH•••O_w and O_wH_w•••X hydrogen bonds. For all systems except X = At the X•••H_w hydrogen-bonding interaction is stronger than the X•••O_w halogen bond. In the XPh-(H₂O)₂ system halogen bonds form only for X > Br. The two water molecules prefer to form a water dimer, either located around the C H bond (for X = Br, At, and I) or located above the benzene ring (for all halogens). Thus, even in the absence of competing strong interactions, halogen bonds may not form for the lighter halogens due to (1) competition from cooperative weak interactions such as C H•••O and OH•••X hydrogen bonds, or (2) if the formation of the halogen bond would preclude the formation of a water dimer. © 2018 Wiley Periodicals, Inc.     

NCO/NCS自由基与XY（X=H,Cl;Y=F,Cl,Br）间σ-型弱作用的理论研究

NCO和NCS是大气化学中非常引人关注的自由基,它们均有三个原子并且两个端基原子均可作为电子给体形成σ-型氢/卤键.本文在MP2/aug-cc-pVDZ水平上研究了NCO/NCS...XY（X=H,Cl;Y=F,Cl,Br）体系中的弱化学键.计算结果表明,氢/卤原子与N原子相连形成的复合物比与O/S原子相连形成的复合物稳定;氢/卤键的稳定性由分子静电势决定,而非原子电负性;对相同的电子给体B（B=N,O/S）和相同的卤原子来说,化学键的强度按Y=F,Cl,Br的顺序逐渐减弱.在氢/卤键形成过程中,自旋电子密度在电子给体和电子受体间的转移较少,但它在自由基内部发生重排,就本文研究的所有复合物而言,自旋电子密度均转移向XY分子的相反位置.     

Infrared spectra of methylidynes formed in reactions of re atoms with methane, methyl halides, methylene halides, and ethane: methylidyne C-H stretching absorptions, bond lengths, and s character

Rhenium carbyne complexes (HC identical with ReH 3, HC identical with ReH 2X, HC identical with ReHX 2, [X = F, Cl, and Br] and CH 3C identical with ReH 3) are produced by reactions of laser-ablated Re atoms with methane, methyl halides, methylene halides, and ethane via oxidative C-H(X) insertion and alpha-hydrogen migration in favor of the carbon-metal triple bond. The stabilities of the carbyne complexes relative to other possible products are predicted by DFT calculations. The diagnostic methylidyne C-H stretching absorptions of HC identical with ReH 3 and its mono- and dihalo derivatives are observed on the blue sides of the precursor C-H stretching bands, and the frequency decreases and the bond length increases in the order of H, F, Cl, and Br, following the decreasing s character in hybridization for the C-H bond. The dihalo methylidynes have higher C-H stretching frequencies and s characters than the monohalo species. The rhenium methylidynes have C s structures, and as a result the HC identical with ReH 3 and CH 3C identical with ReH 3 complexes have two equivalent shorter and one longer Re-H bonds, as compared to the tungsten methylidyne HC identical with WH 3 with three equivalent W-H bonds.     

Theoretical, thermodynamic, spectroscopic, and structural studies of the consequences of one-electron oxidation on the Fe-X bonds in 17- and 18-electron Cp*Fe(dppe)X complexes (X = F, Cl, Br, I, H, CH3)

The compounds Cp*Fe(dppe)X ([Fe]X) and the corresponding cation radicals [Fe*]X*+ are available for the series X = F, Cl, Br, I, H, CH3. This has allowed for a detailed investigation of the dependence of the nature of Fe-X bonding on the identity of X and the oxidation state (charge) of the complex. Cyclic voltammetry demonstrates that the electrode potentials for the [Fe]X0/+ couples decrease in the order I > Br > Cl > H > F > CH3. An "inverse halide order" is seen, in which the most electronegative X leads to the most easily oxidized complex. This suggests that F is the best donor among the halides. The halide trend is also reflected in NMR spectroscopic data. M?ssbauer spectroscopy data also suggest that the F ligand is a strong donor (relative to H and CH3) in [Fe*]X*+. DFT calculations on CpFe(dpe)X ([Fe]X) model complexes nicely reproduce the trend in the electrode potentials for the [Fe*]X0/+ couples. Analysis of the theoretical data within the halogen series indicates that the energy of the [Fe]X HOMO does not correlate with the extent of its Fe(d(pi))-X(p(pi)) antibonding character, which varies in the order I > Br > Cl > F, but rather depends on the destabilizing electrostatic effect caused by X. This effect varies in the order F > Cl > Br > I. A thermochemical cycle that incorporates the [Fe*]X0/+ and [Fe*]0/+ electrode potentials was used to investigate the effect of the oxidation state of the complex on the homolytic bond dissociation energy (BDEhom), defined for the processes Fe-X --> Fe* + X* and Fe-X*+ --> Fe*+ + X*. For all X, it was found that a one-electron oxidation leads to a weakening of the Fe-X bond. This trend was reproduced by the DFT calculations. On the other hand, IR nu(Fe-X) spectroscopy data showed an increase in the stretching frequencies for X = H and Cl upon oxidation. X-ray crystallographic data showed a shortening of the Fe-Cl bond upon oxidation. The trends in IR and Fe-Cl bond distances were reproduced in the DFT calculations. The combined data therefore suggest that oxidation leads to weaker, but shorter, Fe-X bonds. A second thermochemical cycle was applied to investigate the effect of the one-electron oxidation on the heterolytic bond dissociation energies (BDEhet), defined for the processes Fe-X --> Fe+ + X- and Fe-X*+ --> Fe2+ + X-. In this case, the oxidation led to bond strengthening in all cases. The computed BDE values have been analyzed within Ziegler's transition state methodology and decomposed into two components, one electrostatic and one covalent, describing the interaction between the unrelaxed fragments. In all the computed BDEhom and BDEhet values of the [Fe]X models the electrostatic component is important. This helps to understand their respective variations upon oxidation.     

Competition between hydrogen and halogen bonding in halogenated 1‐methyluracil: Water systems

The competition between hydrogen‐ and halogen‐bonding interactions in complexes of 5‐halogenated 1‐methyluracil (XmU; X = F, Cl, Br, I, or At) with one or two water molecules in the binding region between C5‐X and C4?O4 is investigated with M06‐2X/6‐31+G(d). In the singly‐hydrated systems, the water molecule forms a hydrogen bond with C4?O4 for all halogens, whereas structures with a halogen bond between the water oxygen and C5‐X exist only for X = Br, I, and At. Structures with two waters forming a bridge between C4?O and C5‐X (through hydrogen‐ and halogen‐bonding interactions) exist for all halogens except F. The absence of a halogen‐bonded structure in singly‐hydrated ClmU is therefore attributed to the competing hydrogen‐bonding interaction with C4?O4. The halogen‐bond angle in the doubly‐hydrated structures (150–160°) is far from the expected linearity of halogen bonds, indicating that significantly non‐linear halogen bonds may exist in complex environments with competing interactions. © 2016 Wiley Periodicals, Inc.     

Contributions of NH...O and CH...O hydrogen bonds to the stability of beta-sheets in proteins

Ab initio quantum calculations are applied to both the parallel and the antiparallel arrangements of the beta-sheets of proteins. The energies of the NH...O and CH...O hydrogen bonds present in the beta-sheet are evaluated separately from one another by appropriate modifications of the model systems. The bond energies of these two sorts of hydrogen bonds are found to be very nearly equal in the parallel beta-sheet. The NH...O bonds are stronger than CH...O in the antiparallel geometry but only by a relatively small margin. Moreover, the former NH...O bonds are weakened when placed next to one another, as occurs in the antiparallel beta-sheet. As a result, there is little energetic distinction between the NH...O and CH...O bonds in the full antiparallel beta-sheet, just as in the parallel structure.     

Structural motifs in secondary ammonium halides: ring-stacking and ring-laddering in the organic solid state

The ring-stacking and ring-laddering concepts of structural inorganic chemistry may be applied to rationalize motifs observed for secondary ammonium halides R(2)NH(2)X (X = Cl, Br) in the organic solid state. General examination of the directional preferences of N(+)...X(-) contacts in 166 crystal structures confirms that the shortest contacts (3.0-3.2 and 3.2-3.4 A, X = Cl, Br) are N(+)-H...X(-) hydrogen bonds lying approximately along the directions of the N(+)-H bond vectors. The next shortest N(+)...X(-) contacts display two preferred directions of approach: i) contacts in the distance range 3.2-3.5 (X = Cl) and 3.2-3.9 A (X = Br) lie close to the H-N(+)-H plane, along the direction of the bisector of the H-N(+)-H angle; ii) contacts in the distance range 4.0-4.2 (X = Cl) and 4.0-4.4 A (X = Br) lie close to the H-N(+)-H plane, along the direction of an axis extending to the rear of one of the N(+)-H bonds. Both directions of approach lead frequently to association of R(2)NH(2) (+)X(-) ion pairs into laddered motifs. Stacking association is also observed, giving rise in one case to discrete cubanes and in several other cases to extended stacked-cube arrangements. In each case, the distribution of N(+)...X(-) contacts reflects a balance between the directional properties of the N(+)-H...X(-) hydrogen bonds and (primarily steric) interactions between the R groups of the organic moieties. The ladder and stack motifs of the organic ammonium halides are in many cases directly comparable to those in alkali metal amides, [R(2)NM](n), and information derived from the extensive organic sample provides insight into the motifs adopted by the inorganic complexes.     

Hyperconjugation effect in substituted methyl boranes: an orbital deletion procedure analysis

The hyperconjugation effect in the substituted methyl boranes, XCH(2)BH(2) (X = H, CH(3), NH(2), PH(2), OH, SH, F, Cl, Br), has been quantitatively evaluated by using the orbital deletion procedure (ODP), where the p(pi) orbital on boron is deactivated. Except for the case of X = NH(2), which forms a three-membered ring, the magnitude of the hyperconjugative stabilization in all other substituted methylborane ranges from 6.8 to 3.4 kcal/mol. Significant structural changes are observed, particularly the shortening of the central B-C bond distance and the reducing of the corresponding XCB and HCB bond angles. In general, the strength of the hyperconjugative interaction between the occupied sigma(C-X) bond and the vacant p(pi) orbital on boron is correlated to the electronegativity of X, and the competition between the donation ability of the sigma(C-X) and the sigma(C-H) bonds determines the preference of the staggered or eclipsed structure as the energy minimum state. When the donation abilities of the C-X and C-H bonds are comparable, other factors such as electron correlation and steric effect may play elaborate roles in the geometrical propensity of the most stable structures.     

Blue-shifted A-H stretching modes and cooperative hydrogen bonding. 1. Complexes of substituted formaldehyde with cyclic hydrogen fluoride and water clusters

The structures and vibrational spectra of the intermolecular complexes formed by insertion of substituted formaldehyde molecules HRCO (R = H, Li, F, Cl) into cyclic hydrogen fluoride and water clusters are studied at the MP2/aug-cc-pVTZ computational level. Depending on the nature of the substituent R, the cluster type, and its size, the C-H stretching modes of HRCO undergo large blue and partly red shifts, whereas all the F-H and O-H stretching modes of the conventional hydrogen bonds are strongly red-shifted. It is shown that (i) the mechanism of blue shifting can be explained within the concept of the negative intramolecular coupling between C-H and C=O bonds that is inherent to the HRCO monomers, (ii) the blue shifts also occur even if no hydrogen bond is formed, and (iii) variation of the acceptor X or the strength of the C-H...X hydrogen bond may either amplify the blue shift or cause a transition from blue shift to red shift. These findings are illustrated by means of intra- and intermolecular scans of the potential energy surfaces. The performance of the negative intramolecular coupling between C-H and C=O bonds of H(2)CO is interpreted in terms of the NBO analysis of the isolated H(2)CO molecule and H(2)CO interacting with (H2O)n and (HF)n clusters.     

Theoretical study of structure, stability and infrared spectra of CH3X-SO3 (X = F, Cl, Br) complexes

Ab initio computational study of the electronic structure and infrared spectra of donor-acceptor complexes formed between SO3 and CH3X (X = F, Cl, Br) molecules was carried out at the MP2(full)/6-31G(d) level of theory. The calculated complexation energy at G2MP2 level shows that stability of complexes decrease, as CH3Cl-SO3 > CH3Br-SO3 > CH3F-SO3. The NBO partitioning scheme show that the lengthening of the C-F, C-Cl, and C-Br bond lengths, upon complexation, is due to an decreasing "s" character in these bonds.     

Symmetry-adapted perturbation theory analysis of the N...HX hydrogen bonds

The main aim of the study was the detailed investigation of the interaction energy decomposition in dimers and trimers containing N...HX bonds of different types. The study of angular dependence of interaction energy terms partitioned according to the symmetry-adapted perturbation theory (SAPT) was performed for the dimers containing N...HX bonds as mentioned above: ammonia-HX (X = F, Cl, Br) and pyridine-HF complexes. It was found that the electrostatic and induction terms exhibit strong angular dependence, while the exchange contributions are less affected. The dispersion terms are virtually nondirectional. In addition, the three-body SAPT interaction energy analysis for the mixed acid-base NH3...(HF)2 and (NH3)2...HF trimers revealed strong differences between interactions of similar strength but different types (i.e., hydrogen bond and general electrostatic interaction). The importance of the induction terms for the nonadditivity of the interaction energy in strongly polar systems was confirmed.     

Theoretical study of the symmetry of the (OH...O)- hydrogen bonds in vinyl alcohol-vinyl alcoholate systems

The interactions between substituted vinyl alcohols and vinyl alcoholates (X = NH(2), H, F, Cl, CN) are studied at the B3LYP/6-311++G(d,p) level of theory. In a first step, the conformation of the monomers is investigated and the proton affinities (PA(A(-))) of the enolates are calculated. The enols and enolates are held together by strong (OH...O)(-) hydrogen bonds, the hydrogen bond energies ranging from 19.1 to 34.6 kcal mol(-1). The optimized O...O distances are between 2.414 and 2.549 A and the corresponding OH distances from 1.134 and 1.023 A. The other geometry parameters such as C[double bond]C or CO distances also indicate that, in the minimum energy configuration, the hydrogen bonds are characterized by a double well potential. The Mulliken charges on the different atoms of the proton donors and proton acceptors and the frequencies of the nu(OH) stretching vibrations agree with this statement. All the data indicate that the hydrogen bonds are the strongest in the homomolecular complexes. The transition state for hydrogen transfer is located with the transition barrier estimated to be about zero. Upon addition of the zero-point vibration energies to the total potential energy, the barrier vanishes. This is a characteristic feature of low-barrier hydrogen bonds (LBHBs). The hydrogen bond energies are correlated to the difference 1.5 PA(AH) - PA(A(-)). The correlation predicts different energies for homomolecular hydrogen bonds, in agreement with the theoretical calculations. Our results suggest that a PA (or pK(a)) match is not a necessary condition for forming LBHBs in agreement with recent data on the intramolecular hydrogen bond in the enol form of benzoylacetone (J. Am. Chem. Soc. 1998, 120, 12117).     

The structure, properties, and nature of HArF-HOX (X = F, Cl, Br) complex: an ab initio study and an unusual short hydrogen bond

The structure and properties (geometric, energetic, electronic, spectroscopic, and thermodynamic properties) of HArF‐HOX (X = F, Cl, Br) complex have been investigated at the MP2/aug‐cc‐pVTZ level. Three types of complexes are formed through a hydrogen bond or a halogen bond. The HArF‐HOX complex is the most stable, followed by the FArH‐OHX complex, and the HArF‐XOH complex is the most unstable. The binding distance in FArH‐OHX complex is very short (1.1–1.7 Å) and is smaller than that in HArF‐HOX complex. However, the interaction strength in the former is weaker than that in the latter. Thus, an unusual short hydrogen bond is present in FArH‐OHX complex. The associated H‐Ar bond exhibits a red shift, whereas the distant one gives a blue shift. A similar result is also found for the O? H and O? X bonds. The isotropic chemical shift is negative for the associated hydrogen atom but is positive for the associated halogen atom. However, a reverse result is found for the anisotropic chemical shift. The analyses of natural bond orbital and atoms in molecules have been performed for these complexes to understand the nature and properties of hydrogen and halogen bonds. © 2011 Wiley Periodicals, Inc. J Comput Chem, 2011     

Theoretical study of the N-H…O red-shifted and blue-shifted hydrogen bonds

Theoretical calculations are performed to study the nature of the hydrogen bonds in complexes HCHO…HNO, HCOOH…HNO, HCHO…NH3, HCOOH…NH3, HCHO…NH2F and HCOOH…NH2F. The geometric structures and vibrational frequencies of these six complexes at the MP2/6-31+G(d,p), MP2/6-311++G(d,p), B3LYP/6-31+G(d,p) and B3LYP/6-311++G(d,p) levels are calculated by standard and counterpoise-corrected methods, respectively. The results indicate that in complexes HCHO…HNO and HCOOH…HNO the N-H bond is strongly contracted and N-H…O blue-shifted hydrogen bonds are observed. While in complexes HCHO…NH3, HCOOH…NH3, HCHO…NH2F and HCOOH…NH2F, the N-H bond is elongated and N-H…O red-shifted hydrogen bonds are found. From the natural bond orbital analysis it can be seen that the X-H bond length in the X-H…Y hydrogen bond is controlled by a balance of four main factors in the opposite directions: hyperconjugation, electron density redistribution, rehybridization and structural reorganization. Among them hyperconjugation has the effect of elongating the X-H bond, and the other three factors belong to the bond shortening effects. In complexes HCHO…HNO and HCOOH…HNO, the shortening effects dominate which lead to the blue shift of the N-H stretching frequencies. In complexes HCHO…NH3, HCOOH…NH3, HCHO…NH2F and HCOOH…NH2F where elongating effects are dominant, the N-H…O hydrogen bonds are red-shifted.     

Supramolecular chemistry of halogens: complementary features of inorganic (M-X) and organic (C-X') halogens applied to M-X...X'-C halogen bond formation

Electronic differences between inorganic (M-X) and organic (C-X) halogens in conjunction with the anisotropic charge distribution associated with terminal halogens have been exploited in supramolecular synthesis based upon intermolecular M-X...X'-C halogen bonds. The synthesis and crystal structures of a family of compounds trans-[MCl(2)(NC(5)H(4)X-3)(2)] (M = Pd(II), Pt(II); X = F, Cl, Br, I; NC(5)H(4)X-3 = 3-halopyridine) are reported. With the exception of the fluoropyridine compounds, network structures propagated by M-Cl...X-C halogen bonds are adopted and involve all M-Cl and all C-X groups. M-Cl...X-C interactions show Cl...X separations shorter than van der Waals values, shorter distances being observed for heavier halogens (X). Geometries with near linear Cl...X-C angles (155-172 degrees ) and markedly bent M-Cl...X angles (92-137 degrees ) are consistently observed. DFT calculations on the model dimers {trans-[MCl(2)(NH(3))(NC(5)H(4)X-3)]}(2) show association through M-Cl...X-C (X not equal F) interactions with geometries similar to experimental values. DFT calculations of the electrostatic potential distributions for the compounds trans-[PdCl(2)(NC(5)H(4)X-3)(2)] (X = F, Cl, Br, I) demonstrate the effectiveness of the strategy to activate C-X groups toward halogen bond formation by enhancing their electrophilicity, and explain the absence of M-Cl...F-C interactions. The M-Cl...X-C halogen bonds described here can be viewed unambiguously as nucleophile-electrophile interactions that involve an attractive electrostatic contribution. This contrasts with some types of halogen-halogen interactions previously described and suggests that M-Cl...X-C halogen bonds could provide a valuable new synthon for supramolecular chemists.     

Some measures for making halogen bonds stronger than hydrogen bonds in H2CS-HOX (X = F, Cl, and Br) complexes

The properties and applications of halogen bonds are dependent greatly on their strength. In this paper, we suggested some measures for enhancing the strength of the halogen bond relative to the hydrogen bond in the H(2)CS-HOX (X = F, Cl, and Br) system by means of quantum chemical calculations. It has been shown that with comparison to H(2)CO, the S electron donor in H(2)CS results in a smaller difference in strength for the Cl halogen bond and the corresponding hydrogen bond, and the Br halogen bond is even stronger than the hydrogen bond. The Li atom in LiHCS and methyl group in MeHCS cause an increase in the strength of halogen bonding and hydrogen bonding, but the former makes the halogen bond stronger and the latter makes the hydrogen bond stronger. In solvents, the halogen bond in the Br system is strong enough to compete with the hydrogen bond. The interaction nature and properties in these complexes have been analyzed with the natural bond orbital theory.