Mass spectrometric evidence for the modification of small molecules in a cobalt‐60‐irradiated rodent diet

The purpose of this study was to investigate the effect of radiation on the content of animal diet constituents using global metabolomics. Aqueous methanolic extracts of control and cobalt‐60‐irradiated Teklad 7001 diets were comprehensively analyzed using nano‐liquid chromatography–MS/MS. Among the over 2000 ions revealed by XCMS followed by data preprocessing, 94 positive and 143 negative metabolite ions had greater than 1.5‐fold changes and p‐values <0.01. Use of MetaboAnalyst statistical software demonstrated complete separation of the irradiated and non‐radiated diets in unsupervised principal components analysis and supervised partial least squares discriminant analysis. Irradiation led to an increase in the content of phytochemicals such as glucosinolates and oxidized lipids in the diet. Twenty‐eight metabolites that were significantly changed in the irradiated samples were putatively identified at the level of molecular formulae by MS/MS. MS/MS^ALL analysis of chloroform–methanol extracts of the irradiated diet showed increased levels of a number of unique linoleic acid‐derived branched fatty acid esters of hydroxy fatty acids. These data imply that gamma irradiation of animal diets causes chemical changes to dietary components, which in turn may influence the risk of mammary cancer. Copyright © 2017 John Wiley & Sons, Ltd.     

Mass spectrometric and coincidence studies of double photoionization of small molecules

Current and future coincidence techniques in the study of double and multiple ionization by photon impact are reviewed. New results are presented on the formation of Xe⁺, Xe²⁺ and Xe³⁺ in the region of 4d ^?1 ionization and the triple ionization mechanism is discussed. The thresholds for Xe²⁺ and Xe³⁺ are determined as 33.05±0.3 and 64.1±0.3 eV respectively. Triple ionization of a molecule (OCS) followed by fragmentation into three cations is demonstrated for the first time. The formation and charge separation reactions of several molecular double cations are examined by coincidence techniques: intramolecular isotope effects, rearrangement reactions and slow dissociations are shown to occur in triatomic and other small doubly charged molecular ions.     

Mass spectrometric studies on a β-ketosulfone

The fragmentation of the β-ketosulfone-γ-methylsulfonyl-γ-benzoylbutyronitrile under electron bombardment follows a number of different pathways: formation of the benzoyl ion (Major path); remova of acrylonitrile; liberation of the methylsulfonyl radical or of methylsulfonic acid; and finally elimination of a methylenecyano radical. The fragments observed can be explained by these five degradation paths. The reactions are compared with the photochemical cleavage of this β-ketosulfone in benzene solution.     

Mass spectrometric studies of cis‐ and trans‐1a,3‐disubstituted‐1,1‐dichloro‐4‐formyl‐1a, 2,3,4‐tetrahydro‐lH‐azirino[1,2‐a]1,5]benzodiazepines

The mass spectrometric behaviour of four cis‐ and trans‐1a,3‐disubstituted‐1,1‐dichloro‐4‐formyl‐1a,2,3,4‐tetrahydro‐1H‐azirino [1, 2‐a][1,5]benzodiazepines has been studied with the aid of mass‐analysed ion kinetic energy spectrometry and exact mass measurements under electron impact ionization. All compounds show a tendency to eliminate a chlorine atom from the aziridine ring, and then eliminate a neutral propene or styrene from the diazepine ring to yield azirino [1,2‐b][1,3] benzimidazole ions. These azirino [1,2‐a][1,5]‐benzodiazepimes can also eliminate HCl, or Cl plus HCl simultaneously to undergo a ring enlargement rearrangement to yield 1,6‐benzodiazocine ions, which further lose small molecular fragments, propyne or phenylacetylene, with rearrangement to give quinoxaline ions.     

Mass spectrometric evidence for mechanisms of fragmentation of charge-derivatized peptides

Mass spectrometry of charged derivatives of peptides has been a growing area of interest in the past decade. Fragmentation of charged derivatives of peptides is believed to be different from than that of protonated peptides when analyzed by collisionally activated dissociation-tandem mass spectrometry (CAD-MS/MS). The charged derivatives fragment by charge-remote fragmentation mechanisms, which are usually classified as high-energy (HE)-CAD processes. Our objective in the present study is to investigate the mechanism of fragmentation of charged derivatives of peptides when analyzed by matrix-assisted laser desorption/ionization-postsource decay-mass spectrometry (MALDI-PSD-MS) and electrospray ionization (ESI)-CAD-MS/MS (ion trap), which involve low-energy processes. Three major types of hydrogens (alpha, beta, and amide) are available for migration during the formation of the *a(n) ions (the predominant ion series produced from these charged derivatives). To pinpoint which of the three hydrogens is involved in the formation of the *a(n) ions, deuterium-labeled peptide derivatives with labels at specific sites were synthesized and analyzed by MALDI-PSD-MS and ESI-CAD-MS/MS. Our results suggest that the amide hydrogen of the residue at which the cleavage occurs shifts during the formation of *a(n); this observation serves as evidence for the mechanism proposed earlier by Liao et al. for fragmentation of such charged derivatives. The results also help elucidate the structure of the *a(n) ions, *b(n) ions, and others formed during cleavage at the proline residue, as well as the ions formed during loss of the C-terminal residue from these charged derivatives.     

On the relative stability of cobalt‐ and nickel‐based amidinate complexes against β‐migration

We present a first‐principles study on the relative stability of cobalt‐ and nickel‐based amidinate complexes against β‐migration using density functional theory. Factors that influence the reactivity of these compounds were carefully addressed and the calculated molecular structures are in excellent agreement with the available crystal structural data. Reaction energies as well as activation barriers of β‐migration were evaluated. The predicted relative stability of the selected compounds is consistent with experimental observations. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Mass spectrometric investigation of polyfluorinated C60. Evidence for the existence of C60F2n (n = 0–30)

Electron-capture negative ion chemical ionization (EC-NICI) and field desorption (FD) mass spectrometric techniques were utilized to examine polyfluorinated C₆₀. Two different samples from the same preparation, one prior to sublimation and the other sublimed material, were investigated. From the raw non-sublimed product in EC-NCI six series of ions corresponding to different numbers of attached oxygen atoms were obtained, which are represented by the formula [C₆₀F_2nO_m]^?, where n ranged from 0 to 30 and m from 0 to 5. The sublimed material in EC-NICI produced the same six series of ions with up to 48 fluorine atoms attached to C₆₀. The field desorption of the same sample produced similar results, but the signal-to-noise ratios of the spectra were low. Both samples, in the two different techniques examined, yielded C₆₀F₆₀ ions with only an even number of fluorine atoms attached. The present investigation, for the first time, provides direct experimental evidence for the existence of higher fluorinated C₆₀ up to C₆₀F₆₀ and multiple oxides of polyfluoro-C₆₀ with up to five oxygen atoms attached.     

Laser desorption/ionization mass spectrometric analysis of small molecules using fullerene‐derivatized silica as energy‐absorbing material

In spite of the growing acceptance of matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry for the analysis of a wide variety of compounds, including polymers and proteins, its use in analyzing low‐molecular‐weight molecules (<1000m/z) is still limited. This is mainly due to the interference of matrix molecules in the low‐mass range. Here the derivatized fullerenes covalently bound to silica particles with different pore sizes are applied as thin layer for laser desorption/ionization (LDI) mass spectrometric analysis. Thus, an interference of intrinsic matrix ions can be eliminated or minimized in comparison with the state‐of‐the‐art weak organic acid matrices. The desorption/ionization ability of the developed fullerene–silica materials depends on the applied laser power, sample preparation and pore size of the silica particles. Thus, fullerene–silica serves as an LDI support for mass spectrometric analysis of molecules (<1500 Da). The performance of the fullerene–silica is demonstrated by the mass analysis of variety of small molecules such as carbohydrates, amino acids, peptides, phospholipids and drugs. Copyright © 2010 John Wiley & Sons, Ltd.     

Control of helical chirality of poly(quinoxaline‐2,3‐diyl)s based on postpolymerization modification of the terminal group by small chiral molecules

Poly(quinoxaline‐2,3‐diyl)s having a terminal formyl or boronyl group were prepared by living polymerization of 1,2‐diisocyanobenzenes using organopalladium initiators bearing a protected formyl or boronyl group. Poly(quinoxaline‐2,3‐diyl)s were successfully deracemized by reacting them with small optically active molecules at their terminal formyl or boronyl group, leading to the induction of optically active helical structures. Poly(quinoxaline‐2,3‐diyl) having terminal formyl groups was converted to one‐handed helical polymer, in which the screw‐sense excess was 68% (84:16). The helix sense of the boronyl‐terminated poly(quinoxaline‐2,3‐diyl) was reversibly controlled by attaching and removing the chiral group. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Mass spectrometric properties of N‐(2‐methoxybenzyl)‐2‐(2,4,6‐trimethoxyphenyl)ethanamine (2,4,6‐TMPEA‐NBOMe), a new representative of designer drugs of NBOMe series and derivatives thereof

Emergence of new psychoactive substances, hallucinogenic phenethylamines in particular, in illicit market is a serious threat to human health in global scale. We have detected and identified N‐(2‐methoxybenzyl)‐2‐(2,4,6‐trimethoxyphenyl)ethanamine (2,4,6‐TMPEA‐NBOMe), a new compound in NBOMe series. Identification was achieved by means of gas chromatography/mass spectrometry (GC/MS), including high‐resolution mass spectrometry with tandem experiments (GC/HRMS and GC/HRMS²), ultra‐high performance liquid chromatography/high‐resolution mass spectrometry with tandem experiments (UHPLC/HRMS and UHPLC/HRMS²), and ¹H and ¹³C nuclear magnetic resonance spectroscopy. The peculiarities of fragmentation of the compound under electron ionization (EI) and collision‐induced dissociation were studied. Despite of the empirical rule denying migration of the hydrogen atom in McLafferty rearrangement to the benzene ring with substituents in the both ortho‐positions, it easily occurs for 2,4,6‐TMPEA‐NBOMe in EI conditions. We have noticed that electron‐donating substituents, e.g. methoxy groups in the both ortho‐positions and para‐positions favor the rearrangement. For specially synthesized N‐methyl and N‐acyl derivatives McLafferty rearrangement is not observed. N‐Acyl derivatives demonstrate McLafferty rearrangement, but the charge retains at the alternative fragment involving N‐acyl carbonyl group. We have also showed that the hydrogen atoms in 2,4,6‐trimethoxybenzene ring may be easily substituted for deuterium or for strong electrophiles like trifluoroacetyl. Analytical characteristics of 2,4,6‐TMPEA‐NBOMe and of some derivatives thereof which enable their determination in various criminal seizures are given. Copyright © 2016 John Wiley & Sons, Ltd.     

Mass spectrometric investigations of α‐ and β‐cyclodextrin complexes with ortho‐, meta‐ and para‐coumaric acids by negative mode electrospray ionization

The mass spectrometric characterization of aqueous solutions of α‐ and β‐cyclodextrins (CDs) and o‐, m‐ and p‐coumaric acids (CAs) by negative ion electrospray ionization (ESI) indicates that the [CD+CA]^? ions were sourced from the inclusion complex present in solution and from the anion attached to CD molecules formed in the spray processes. The anion adducts formed in the spray process contribute significantly to the signal intensity of an ionized inclusion complex thus overestimating the calculated stability constant (K) of solution‐phase complexes by one to two orders of magnitude. The relative intensities of anion adducts in mass spectra depend on the concentration ratio of the anion and the CD in spray droplets, while the relative intensity of the ionized inclusion complex depends on CD and CA concentrations in solutions and the value of K. Ion Mobility Spectrometry Mass Spectrometry [IMS‐MS] measurements show that the collision cross‐section (Ω) values of the [CD+CA]^? or [(CD)₂₊CA]^2? and [CD+CA] complex ions are 5–6% larger than or equal to CD^? or [CD], respectively. Therefore, in the gas phase the anion adducts [CD+CA^?] on cyclodextrin molecules possess the same conformations as the ionized inclusion complexes [CD+CA]^?. Copyright © 2008 John Wiley & Sons, Ltd.     

Mass spectrometric characterisation of a condensation product between porphobilinogen and indolyl‐3‐acryloylglycine in urine of patients with acute intermittent porphyria

We document the presence of a previously unknown species in the urine of patients with acute intermittent porphyria (AIP). The compound was fully characterised by liquid chromatography tandem mass spectrometry. Interpretation of both full spectrum acquisition and product ion spectra acquired in positive and negative ionisation modes by quadrupole time of flight MS allowed for the identification of a condensation product arising from porphobilinogen (PBG, increased in the urine of AIP patients) and indolyl‐3‐acryloylglycine (IAG, derived from indolylacrylic acid and present in human urine). The structure was unequivocally confirmed through comparison between the selected reaction monitoring chromatograms obtained from the urinary species and the condensation product qualitatively synthesised in the laboratory. Owing to the large amounts of both PBG and IAG in urine of AIP patients, the possible ex vivo formation of PBG‐IAG in urine samples was evaluated. The product was spontaneously formed at room temperature, at 4 °C and even during storage at ?20 °C when spiking a control sample with PBG. A positive correlation was found between PBG and PBG‐IAG in samples collected from AIP patients. However, no correlation was found between PBG‐IAG and IAG. Purified PBG‐IAG did not form the characteristic chromogen after application of p‐dimethylaminobenzaldehyde in HCl, thus suggesting that the current techniques used to measure PBG in urine of AIP patients based on Ehlrich's reaction do not detect this newly characterised PBG‐IAG fraction. Copyright © 2015 John Wiley & Sons, Ltd.     

Crystal‐Packing Trends for a Series of 6,9,12,15,18‐Pentaaryl‐1‐hydro[60]fullerenes

The relationship between the size of the substituents of aryl groups in a series of fifteen 6,9,12,15,18‐pentaaryl‐1‐hydro[60]fullerenes and the solid‐state structures and packing motifs of these compounds has been analyzed. Pentaarylfullerenes have a characteristic “badminton shuttlecock” shape that causes several derivatives to crystallize into columnar stacks. However, many pentaarylfullerenes form non‐stacked structures with, for example, dimeric, layered, diamondoid, or feather‐in‐cavity relationships between molecules. Computational modeling gave a qualitative estimate of the best shape match between the ball and socket surfaces of each pentaarylfullerene. The best match was for pentaarylfullerenes with large, spherically shaped para‐substituents on the aryl groups. The series of pentaarylfullerenes was characterized by single‐crystal X‐ray diffraction. A total of 34 crystal structures were obtained as various solvates and were categorized by their packing motifs.     

Mass spectrometric study of gas‐phase ions of acid β‐glucosidase (Cerezyme) and iminosugar pharmacological chaperones

The effect on the conformations and stability of gas‐phase ions of Cerezyme, a glycoprotein, when bound to three small‐molecule chaperones has been studied using intact ESI MS, collision cross section and MS/MS measurements. To distinguish between the peaks from apo and small‐molecule complex ions, Cerezyme is deglycosylated (dg‐Cer). ESI MS of dg‐Cer reveals that glycosylation accounts for 8.5% of the molecular weight. When excess chaperone, either covalent (2FGF) or noncovalent (A and B iminosugars), is added to solutions of dg‐Cer, mass spectra show peaks from 1:1 chaperone–enzyme complexes as well as free enzyme. On average, ions of the apoenzyme have 1.6 times higher cross sections when activated in the source region of the mass spectrometer. For a given charge state, ions of complexes of 2FGF and B have about 30% and 8.4% lower cross sections, respectively, compared to the apoenzyme. Thus, binding the chaperones causes the gas‐phase protein to adopt more compact conformations. The noncovalent complex ions dissociate by the loss of charged chaperones. In the gas phase, the relative stability of dg‐Cer with B is higher than that with the A, whereas in solution A binds enzyme more strongly than B. Nevertheless, the disagreement is explained based on the greater number of contacts between the B and dg‐Cer than the A and dg‐Cer (13 vs. 8), indicating the importance of noncovalent interactions within the protein–chaperone complex in the absence of solvent. Findings in this work suggest a hypothesis towards predicting a consistent correlation between gas‐phase properties to solution binding properties. Copyright © 2014 John Wiley & Sons, Ltd.