Pyrrolidine N-alkylphosphonates and related nucleotide analogues: synthesis and stereochemistry

N-Phosphonoalkyl-trans-3,4-dihydroxypyrrolidine derivatives were synthesized and exploited as synthons for the preparation of hydroxypyrrolidine nucleoside phosphonic acids, the 3′-deoxynucleoside 5′-phosphate analogues. Simultaneously, an alternative route, the N-phosphoalkylation of the preformed pyrrolidine nucleosides employing Mannich- and Michael-type reactions, was investigated to obtain desired nucleotide analogues. In contrast to the latter approach, the former resulted in the formation of two diastereoisomers very likely due to the existence of two possible S_N2 transition states during a nucleophilic displacement. The stereochemistry of the prepared nucleotide analogues was studied by NMR spectroscopy.     

Structure and Physical Properties of Coordination Compounds of 2-Aminoindan-2-Phosphonic Acid with Some D-Electron Elements

Abstract

Many complexes of 1-aminoakylphosphonic acids have been obtained and their structures have been studied [1–3]. On the other hand, 2-aminoindan-2-phosphonic acid (2-AIP), the phosphonic conformationally restricted cyclic analogue of phenylalanine, has been recently obtained [4]. We undertook a study of interaction of cobalt(II), nickel(II), and copper(II) with 2-AIP, to learn how the rigid Iigand structure influences the complexes structure.     

Isoprenoid biosynthesis via the MEP pathway. Synthesis of (3,4)-3,4-dihydroxy-5-oxohexylphosphonic acid, an isosteric analogue of 1-deoxy-D-xylulose 5-phosphate, the substrate of the 1-deoxy-D-xylulose 5-phosphate reducto-isomerase

(3,4)-3,4-Dihydroxy-5-oxohexylphosphonic acid, an isosteric analogue of 1-deoxy-D-xylulose 5-phosphate (DXP), was obtained in enantiomerically pure form from (+)-2,3--benzylidene--threitol by a seven-step sequence. This phosphonate did not affect the growth of. It did not inhibit the 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), but was converted by this enzyme into (3,4)-3,4,5-trihydroxy-3-methylpentylphosphonic acid, an isosteric analogue of 2-C-methyl-D-erythritol 4-phosphate. The enzyme was, however, less efficient with the methylene phosphonate analogue than with the natural substrate.     

Kanosamine biosynthesis: a likely source of the aminoshikimate pathway's nitrogen atom

The biosynthetic source of the nitrogen atom incorporated into the aminoshikimate pathway has remained a question for some time. 3-Amino-3-deoxy-D-fructose 6-phosphate has previously been demonstrated to be a precursor to 4-amino-3,4-dideoxy-D-arabino-heptulosonic acid 7-phosphate and 3-amino-5-hydroxybenzoic acid via the inferred intermediacy of 1-deoxy-1-imino-D-erythrose 4-phosphate in Amycolatopsis mediterranei cell-free extract. This investigation examines the possibility that the natural product kanosamine might be a precursor to 3-amino-3-deoxy-D-fructose 6-phosphate. Kanosamine 6-phosphate was synthesized by a chemoenzymatic route and incubated in A. mediterranei cell-free lysate along with D-ribose 5-phosphate and phosphoenolpyruvate. Formation of 4-amino-3,4-dideoxy-D-arabino-heptulosonic acid 7-phosphate and 3-amino-5-hydroxybenzoic acid was observed. Subsequent incubation in A. mediterranei cell-free lysate of glutamine and NAD with UDP-glucose resulted in the formation of kanosamine. The bioconversion of UDP-glucose into kanosamine along with the bioconversion of kanosamine 6-phosphate into 4-amino-3,4-dideoxy-D-arabino-heptulosonic acid 7-phosphate and 3-amino-5-hydroxybenzoic acid suggests that kanosamine biosynthesis is the source of the aminoshikimate pathway's nitrogen atom.     

Surface modification of Y2O3 nanoparticles

Rare earth ion-doped yttrium oxide (Y2O3) nanocrystals are nontoxic and can be prepared as upconversion materials for cellular imaging, but they do not suspend well in water. In contrast to their tendency to dissolve in acidic media, yttria (Y2O3) nanoparticles readily react with phosphonic acids to give phosphonate-bonded yttria particles. Through the choice of phosphonic acid, the hydrophilicity of the nanoparticles can be controlled. The synthesis of a novel tetraethylene glycol-derived phosphonic acid is described; yttria treated with the corresponding phosphonate is easily dispersed in aqueous media. The preparation of yttria bonded to a phosphonate that may be used for cross coupling with biomolecules is also described.     

Michael addition reactions between various nucleophilic glycine equivalents and (S,E)-1-enoyl-5-oxo-N-phenylpyrrolidine-2-carboxamide,an optimal type of chiral Michael acceptor in the asymmetric synthesis of β-phenyl pyroglutamic acid and related compounds

(S)-5-Oxo-N-phenyl-1-[(E)-3-phenylacryloyl]pyrrolidine-2-carboxamide, easily prepared from inexpensive and readily available, in both enantiomeric forms, glutamic/pyroglutamic acid was designed as an optimal type of chiral Michael acceptor for reactions with a series of nucleophilic glycine equivalents. A study of the corresponding Michael addition reactions revealed that the new generation of modular glycine derivatives, as a counterpart to the Michael acceptor, provides for operationally convenient preparation of β-phenyl pyroglutamic acids and related compounds with virtually complete chemical and stereochemical outcomes.     

Enantiomeric Resolution and Absolute Configuration of a Chiral δ-Lactam,Useful Intermediate for the Synthesis of Bioactive Compounds

During the past several years, the frequency of discovery of new molecular entities based on γ- or δ-lactam scaffolds has increased continuously. Most of them are characterized by the presence of at least one chiral center. Herein, we present the preparation, isolation and the absolute configuration assignment of enantiomeric 2-(4-bromophenyl)-1-isobutyl-6-oxopiperidin-3-carboxylic acid (trans-1). For the preparation of racemic trans-1, the Castagnoli-Cushman reaction was employed. (Semi)-preparative enantioselective HPLC allowed to obtain enantiomerically pure trans-1 whose absolute configuration was assigned by X-ray diffractometry. Compound (+)-(2R,3R)-1 represents a reference compound for the configurational study of structurally related lactams.     

Synthesis of [13C6]3,4-diaminobenzoic acid as a precursor for stable isotope labeled benzimidazoles

The synthesis of [¹³C₆]3,4-diaminobenzoic acid from commercially available [¹³C₆]aniline is described in six steps. Salient features of this route include the preparation of a differentially protected 3,4-diaminobenzonitrile, hydrogen gas free aromatic nitro group reduction with ammonium formate and facile benzimidazole ring closure of the ortho-arylenediamine with triethylorthoformate. This stable-labeled 3,4-diaminobenzoic acid is an ideal [M+6]isotopomer to synthesize complex benzimidazole fragments for mass spectrometry internal assays.     

Synthesis of self-doped conducting polyaniline bearing phosphonic acid

As a self-doped conducting polyaniline bearing phosphonic acid, poly(2-methoxyaniline-5-phosphonic acid) (PMAP) was synthesized via oxidative polymerization of 2-methoxyaniline-5-phosphonic acid. The pyridinium salt of thus-obtained PMAP was water-soluble and its film exhibited conductivity.     

Aziridine-2-phosphonic acid,the valuable synthon for synthesis of 1-amino-2-functionalized ethanephosphonic acids

The ring-opening of aziridine-2-phosphonic acid with a series of nucleophiles was studied. This reaction was found to proceed regioselectively and to provide a good preparative method for the synthesis of phosphonic analogs of various 2-substituted 1-aminoethanecarboxylic acids.     

Unusually large reactivity differences in the transformation of cyclopropane lactones to 1‐aminocyclopropane‐1‐phosphonic acids and their carboxylic acid analogues

Starting from a cyclopropane lactone 5 , the synthesis of a 1‐aminocyclopropane‐1‐phosphonic acid derivative 11 is described. The considerable differences in the reactivity of the lactone ring opening in the case of a cyclopropane lactone substituted by a phosphonic acid ester 5 and their carboxylic acid ester analogue 2 toward ammonia or amines have been compared and interpreted by using the map of electrostatic potentials. © 2001 John Wiley & Sons, Inc. Heteroatom Chem 12:90–96, 2001     

Novel and Convenient Method for the Preparation of Phosphonate Peptides and Phosphonamidate Peptides

Phosphonate and phosphonamidate peptides are phosphorus analogues of natural peptides. They have been great used as stable mimetics of tetrahedral transition states as enzyme inhibitors and as haptens for catalytic antibody research in recent years. Although several methods are available for the preparation of phosphonate peptides and phosphonamidate peptides, all of them use phosphonic acid derivatives as starting materials. The overall yields from the synthesis of phosphonic acid derivatives to desired peptides are not satisfactory in most cases.     

Synthesis of phosphinic and phosphonic analogs of homoserine

A convenient procedure for the synthesis of 1-amino-3-hydroxypropylphosphinic and -phosphonic acids (analogs of homoserine) was developed. The procedure involves the reaction of salts of phosphinic and phosphonic analogs of S-methylmethionine with AcONa/AcOH followed by hydrolysis.     

Versatile synthesis of 3,4-b diheteropentalenes

We describe a new route for the synthesis of thieno[3,4-b]thiophene, alkyl derivatives thereof, seleno[3,4-b]thiophene, and thieno[3,4-b]furan made from inexpensive starting materials, such as thiophene-2-carboxylic acid and furan-2-carboxylic acid. Such fused heterocycles are of great interest for low band gap organic semiconductors and applications including OLEDs, organic photovoltaic cells, and electrochromics.     

Pipérazinediones-2,5. 2. Les acides dioxothiazolidino pipérazine carboxyliques et leurs dérivés désulfurés

We have recently described a new synthetic route which has been used in our laboratory for the preparation of several novel heterocyclic systems comprising, the I,l-dimethylthiazolidino[3,4-o)piperazine-5,8- dione-3-carboxylic acid and the 2,2-dimethylthiazolidino[3,2-a]piper- azine-5,8-dione-3-carboxylic acid (8). The former was obtained with quan- titative yield and the latter with 71% yield. As a development of our studies on novel 2,5-piperazinedione systems, we describe in this report, the synthesis of the (2,5-dioxopiperazinyl)2-isobutyric acid (9), then-butyl(2-isopropyl)3,6-dioxopiperazinyl-l) acetate (1 l), and another synthetic route, illustrated in Scheme I, by which the compound 8 was obtained with quantitative yield. Spectrometric data were obtained and their interpretation confirms the proposed structure of the new compounds.     

Isosteres of natural phosphates. 11. Synthesis of a phosphonic acid analogue of an oligonucleotide

The synthesis of an isosteric phosphonic acid analogue of UpUpU has been accomplished. In this analogue each of the normal 3'-phosphate esteric oxygen atoms has been replaced with a methylene group. The synthesis began with diacetone-D-glucose which was converted in a series of reactions to a 3'-deoxy-3'-dihydroxyphosphinylmethyluridine derivative, which bore protection as a 3-benzoylpropionate at the 5'-hydroxyl and as an acetate at the 2'-hydroxyl. This critical intermediate (A) was condensed with 2',3'-O-isopropylidene uridine to generate a protected analogue of a dinucleoside phosphate. Selective removal of the 3-benzoylpropionate followed by condensation with another unit of (A) yielded the protected oligonucleotide. Deprotection was accomplished in two steps.     

Regioselective Synthesis of Highly Aryl‐Substituted Pyrrole Carboxylates as Useful Medicinal Chemistry Leads

The regioselective syntheses of two pharmaceutically relevant pyrrole scaffolds are described. A synthetic route for the preparation of differentially substituted pyrrole‐3,4‐dicarboxylates is presented and exemplified. This route circumvents some of the problems and limitations associated with previous butynedioic diester condensations and 1,3‐dipolar cycloaddition reactions. A route to the related 4,5‐diarylpyrrole‐2‐carboxylic acid scaffold is also presented. Both routes allow for the regiocontrolled preparation of highly substituted pyrrole pharmacophore cores.     

A Preparative Synthesis of 1-Amino-3-hydroxypropylphosphonic Acid (Phosphonic Analogue of Homoserine)

A novel procedure for the preparation of the phosphonic analogue of homoserine is described starting from the commercially available 4-acetoxy-azetidin-2-one.     

Lipase-catalyzed kinetic resolution approach toward enantiomerically enriched 1-(β-hydroxypropyl)indoles

In a route towards enantiomerically enriched 1-(β-hydroxypropyl)indoles, which are potentially useful building blocks for high value-added chemicals synthesis, a kinetic resolution approach by means of lipase-catalyzed enantioselective acylation as well as hydrolysis/methanolysis has been elaborated for the first time. The enzymatic resolution of chiral N-substituted indole-based sec-alcohols was successfully accomplished, yielding both enantiomeric forms of the employed derivatives with up to >99% enantiomeric purity via an enantioselective transesterification under mild reaction conditions. The most selective resolutions were obtained using fungal (CAL-B and TLL) and bacterial (PFL and BCL) lipases and vinyl acetate as the acyl?group donor. The synthetic protocol described herein is very simple, user-friendly and efficient, thus paving the way for future access towards more complex compounds of this type. The absolute configurations of novel enantiomeric derivatives, and thus stereoselectivity of the described enzymatic reactions were confirmed by application of CDA-based NMR methodology and single-crystal X-ray diffraction analysis.     

Propane phosphonic acid anhydride: a new promoter for the one-pot Biginelli synthesis of 3,4-dihydropyrimidin-2(1H)-ones

Propane phosphonic acid anhydride has been found to promote the Biginelli synthesis of 3,4-dihydropyrimidin-2(1H)-ones. The use of this agent is characterized by moderate costs, low toxicity and simple workup conditions.