Light -induced cytochrome reactions in the green photosynthetic bacterium Chloropseudomonas ethylicum

Abstract— Light-induced absorbance changes in cells of the green photosynthetic bacterium choloropseudomonas ethylicum depleted of substrate show that at lest two cytochromes become oxidized upon illumination. Inhibitory effects of phenylmercuric acetate and the uncoupler carbonyl cyanide 3-chlorophenylhydrazone (which apparently acted also as a sulfhydryl reagent) prove athat neither of the cytochromes is oxidized by the other. A provisional electron transport pathway is presentd, which is compaltible with the experimentsl data.     

Ultrafast energy transfer in chlorosomes from the green photosynthetic bacterium Chloroflexus aurantiacus

Energy transfers between the bacteriochlorophyll c and a antennae in light-harvesting chlorosomes from the green bacterium Chloroflexes aurantiacus have been studied in two-color pump-probe experiments with improved sensitivity and wavelength versatility. The BChl c --> BChl a energy transfers are well simulated with biexponential kinetics, with lifetimes of 2-3 and 11 ps. They do not exhibit an appreciable subpicosecond component. In the context of a kinetic model for chlorosomes, these lifetimes suggest that both internal BChl c processes and the BChl c --> BChl a energy-transfer step contribute materially to the empirical rod-to-baseplate energy-transfer kinetics.     

'Uphill' energy transfer in a photosynthetic bacterium

Abstract— Detectable energy flow in the ‘uphill’ direction was demonstrated by exciting the fluorescence of a shorter wavelength band of Rhodopseudomonas spheroides with light absorbed by a longer wavelength band. A variation in the fluorescence spectrum which depends on the state of the traps was also demonstrated. This information, coupled with fluorescence data obtained with monochromatic light, leads to the conclusion that for the longest wavelength bands the ‘uphill’ transfer is about as fast as transfer to the traps; i.e. the ‘average’ rate constant is on the order of 10⁹ sec. The ratio of the uphill to downhill rate agrees with a theoretical estimate of about 0·5. Some possible ramifications of such uphill flow are discussed.     

Spectral heterogeneity in single light-harvesting chlorosomes from green sulfur photosynthetic bacterium chlorobium tepidum

The fluorescence emission properties of single chlorosomes from the green sulfur photosynthetic bacterium Chlorobium (Chl.) tepidum are studied for the first time, using a total internal reflection fluorescence microscope. The fluorescence peak positions of bacteriochlorophyll (BChl)-c self-aggregates in a single chlorosome of Chl. tepidum were widely distributed in the wavelength region between 750 and 768 nm, and the standard deviation (s.d. = 4.1 nm, n = 51) was larger than that of single chlorosomes of Chloroflexus (Cfl.) (s.d. = 1.9 nm, n = 50). The spectral heterogeneity among single chlorosomes from Chl. tepidum was in sharp contrast to those from Cfl. aurantiacus. The difference of chlorosomal spectral properties between Chl. tepidum and Cfl. aurantiacus at the single-unit level would be ascribed to the homolog composition of BChl-c--chlorosomes of Chl. tepidum have BChl substituted with various alkyl groups at both the 8- and 12-positions, whereas light-harvesting BChl-c molecules in Cfl. chlorosomes have the same substituents at the 8- (ethyl group) and 12- (methyl group) positions.     

Bioaccumulation and excretion of arsenic compounds by a marine unicellular alga,polyphysa peniculus

Polyphysa peniculus was grown in artificial seawater in the presence of arsenate, arsenite, monomethylarsonate and dimethylarsinic acid. The separation and identification of some of the arsenic species produced in the cells as well as in the growth medium were achieved by using hydride generation–gas chromatography–atomic absorption spectrometry methodology. Arsenite and dimethylarsinate were detected following incubation with arsenate. When the alga was treated with arsenite, dimethylarsinate was the major metabolite in the cells and in the growth medium; trace amounts of monomethylarsonate were also detected in the cells. With monomethylarsonate as a substrate, the metabolite is dimethylarsinate. Polyphysa peniculus did not metabolize dimethylarsinic acid when it was used as a substrate. Significant amounts of more complex arsenic species, such as arsenosungars, were not observed in the cells or medium on the evidence of flow injection–microwave digestion–hydride generation–atomic absorption spectrometry methodology. Transfer of the exposed cells to fresh medium caused release of most cell–associated arsenicals to the surrounding environment.     

Studies on the genetic variation of the green unicellular alga Haematococcus pluvialis (Chlorophyceae) obtained from different geographical locations using ISSR and RAPD molecular marker

Haematococcus pluvialis (Flotow) is a unicellular green alga, which is considered to be the best astaxanthin-producing organism. Molecular markers are suitable tools for the purpose of finding out genetic variations in organisms; however there have been no studies conducted on ISSR or RAPD molecular markers for this organism. The DNA of 10 different strains of H. pluvialis (four strains from Iran, two strains from Finland, one strain from Switzerland and three strains from the USA) was extracted. A genetic similarity study was carried out using 14 ISSR and 12 RAPD primers. Moreover, the molecular weights of the bands produced ranged from 0.14 to 3.4 Kb. The PCA and dendrogram clustered the H. pluvialis strains into various groups according to their geographical origin. The lowest genetic similarity was between the Iran2 and USA2 strains (0.08) and the highest genetic similarity was between Finland1 and Finland2 (0.64). The maximum numbers of bands produced by the ISSR and RAPD primers were 35 and 6 bands, respectively. The results showed that ISSR and RAPD markers are useful for genetic diversity studies of Haematococcus as they showed geographical discrimination.     

Presence of exclusively bacteriochlorophyll-c containing substrain in the culture of green sulfur photosynthetic bacterium Chlorobium vibrioforme strain NCIB 8327 producing bacteriochlorophyll-d.

The light-dependent composition change of light harvesting bacteriochlorophyll(BChl)s in the present culture of a green sulfur photosynthetic bacterium Chlorobium (Chl.) vibrioforme f. sp. thiosulfatophilum strain NCIB 8327 was investigated by visible absorption spectroscopy and HPLC analyses. When the culture was repeatedly grown in liquid media under a low light condition, both the Soret and Qy absorption bands of the in vivo spectrum were shifted to longer wavelengths. Analysis of the extracted pigments by HPLC revealed that the ratio of the amount of BChl-c to that of BChl-d molecules gradually increased during repeated cultivation. In contrast, when the culture grown under a low light intensity was transferred to a high light condition and continued to be grown, the absorption bands were shifted to shorter wavelengths and the ratio of BChls-c/d decreased finally to the almost original value. Colonies were prepared on solid agar media from the liquid culture containing both BChls-c and d, which was grown under a low light intensity. Each colony obtained was found to contain either BChl-c or d, but not both of them. Two types of cells isolated in this study were derived from the same clone, judged from their genetic analyses. The variation of pigment composition in our liquid culture observed here could be ascribed to the difference of growth rates between two substrains containing BChl-c and BChl-d, respectively, depending on light conditions.     

Comparison between chlorosomes containing bacteriochlorophyll-c and chlorosomes containing bacteriochlorophyll-d isolated from two substrains of green sulfur photosynthetic bacterium Chlorobium vibrioforme NCIB 8327

Chlorosomes containing bacteriochlorophyll(BChl)-c and those containing BChl-d were isolated from two substrains of Chlorobium vibrioforme f. sp. thiosulfatophilum NCIB 8327, respectively. The two types of chlorosomes were investigated from the following aspect, what kinds of effects the molecular structure of chlorosomal BChls had on structural and spectroscopic properties of in vivo self-aggregates in chlorosomes without alteration of the other components such as chlorosomal proteins and lipids; both chlorosomes were expected to have the same components except for light-harvesting BChls. In their visible absorption spectra, the differences of Soret and Q(y) peak positions between BChl-c containing and BChl-d containing chlorosomes were similar to the differences between monomeric BChl-c and d. An inverse S-shaped CD signal in the Q(y) region of BChl-d containing chlorosomes was 1.4 times larger than that of BChl-c containing chlorosomes, when the Q(y) absorbance of the two chlorosomes was almost the same. This implies that the excitonic interaction of BChl-d is larger than that of BChl-c in natural chlorosomes. Resonance Raman spectroscopy showed that BChl self-assemblies in both chlorosomes were essentially formed by the same local structural interaction among 3(1)-hydroxy group, 13-keto group, and central magnesium. BChl-d self-aggregates in chlorosomes were more tolerant of 1-hexanol than in vivo BChl-c aggregates, suggesting that the molecular structure of BChl-d provided more stable self-assemblies than BChl-c in natural chlorosomes.     

Immobilized Firefly Luciferase and its use in Analysis

Abstract

Firefly luciferase immobilized on sepharose 4B and cellophane filmis shown to retain as much as 20% of its initial activity and can be durably stored at 4O°C with no appreciable loss in its enzymatic activity. The application of the immobilized luciferase is described for ATP detection at concentrations ranging from 0.1 pM to 1 mM, as well as for activity determination of enzymes catalyzing ATP synthesis (pyruvatekinase) and ATP hydrolysis (ATP-ase). The same sample of luciferase immobilized on cellophane film was 7%.     

Production of poly-3-hydroxyalkanoates from CO and H2 by a novel photosynthetic bacterium

A novel process is described to efficiently photoconvert low-grade organic materials such as waste biomass into natural biological plastics. When heterogeneous forms of dry biomass are thermally gasified, relatively homogeneous synthesis gas mixtures composed primarily of carbon monoxide and hydrogen are produced. Unique strains of photosynthetic bacteria were isolated that nearly quantitatively photoassimilate the carbon monoxide and hydrogen components of synthesis gas into new cell mass. Under unbalanced culture conditions when cellular growth is limited by shortages of nitrogen, calcium, magnesium, iron, or essential vitamins, up to 28% of the new cell mass is found as granules of poly-3-hydroxyalkanoate (PHA), a highmolecular-weight thermoplastic that can be solvent-extracted. The dominant monomeric unit of PHAs is 3-hydroxybutyrate (3HB), which is polymerized into the homopolymeric poly-3-hydroxybutyrate (PHB). PHB is marketed as a biodegradable plastic with physical properties similar to polystyrene. When a green alga was cocultured with the photosynthetic bacterium in light-dark (day-night) cycles, the bacteria synthesized a polymer of poly-3-hydroxybutyrate-3-hydroxyvalerate (PHB-V) with a composition of 70% 3HB and 30% 3-hydroxyvalerate (3HV) to an extent of 18% of the new cell mass. PHB-V is commercially marketed as Biopol and has physical properties similar to polypropylene or polyethylene. Our results demonstrate that a strain of photosynthetic bacteria capable of photoassimilating synthesis gas or producer gas is a potential candidate for large-scale production of biological polyesters.     

Fluorescence detection of electron spin echoes in the triplet state of nonphosphorescent molecules and a photosynthetic bacterium

We have observed electron spin echo signals in zero magnetic field in the triplet state of the porphin free base and the photo-induced triplet state of the photosynthetic bacterium Rhodopseudomonas spheroides (wild type) via changes in the intensity of the fluorescence. With the help of the echo signals we have been able to determine the spin memory times of the triplet spins.     

Non-Hermitian exciton dynamics in a photosynthetic unit system

The non-Hermitian quantum dynamics of excitonic energy transfer in photosynthetic systems is investigated using a dissipative two-level dimer model. The approach is based on Green's function formalism which permits consideration of decoherence and intersite transfer processes on comparable terms. The results indicate a combination of coherent and incoherent behavior at higher temperatures with the possibility of exceptional points occurring at the coherent-incoherent crossover regime at critical temperatures. When each dimer site is coupled equally to the environmental sources of dissipation, the excitonic wavepacket evolves with time with a coherent component, which can be attributed to the indistinguishability of the sources of dissipation. The time evolution characteristics of the B850 Bchls dimer system is analysed using typical parameter estimates in photosynthetic systems, and the quantum brachistochrone passage times are obtained for a range of parameters.     

In vitro self-assembly of bacteriochlorophyll c derivatives monoesterified with α,ω-diols isolated from the green sulfur photosynthetic bacterium Chlorobaculum tepidum

Esterifying chains of chlorophyllous pigments play important roles in the formation of photosynthetic supramolecules, but their effects have not thoroughly been unraveled yet. Substitution of the esterifying chains in these pigments will be one possible strategy to elucidate this enigma. Recently, unnatural bacteriochlorophylls (BChls) c possessing a hydroxy group at the terminus of the esterifying chains were successfully biosynthesised in the green sulfur bacterium Chlorobaculum (Cba.) tepidum grown by supplementation of α,ω-diols. In this paper, in vitro assembling behaviours of unnatural BChls c isolated from Cba. tepidum grown with 1,8-octanediol, 1,12-dodecanediol and 1,16-hexadecanediol were characterised in aqueous Triton X-100 micelles to investigate the effects of the terminal hydroxy group in the esterifying chains of BChls c on self-aggregates such as chlorosomes, major antenna complexes in green photosynthetic bacteria. The bacteriochlorophyll (BChl) c derivatives monoesterified with α,ω-diols formed chlorosomal self-aggregates, but their formations were much slower than those of natural BChl c. The Q_y absorption bands of the residual monomers of these BChl c derivatives were larger than those of natural BChl c. These suggest that the esterifying α,ω-diols in these unnatural BChls c somewhat interfered with formation of chlorosome-like aggregates compared with the natural esterifying farnesol.     

Absorption linear dichroism measured directly on a single light-harvesting system: the role of disorder in chlorosomes of green photosynthetic bacteria

Chlorosomes are light-harvesting antennae of photosynthetic bacteria containing large numbers of self-aggregated bacteriochlorophyll (BChl) molecules. They have developed unique photophysical properties that enable them to absorb light and transfer the excitation energy with very high efficiency. However, the molecular-level organization, that produces the photophysical properties of BChl molecules in the aggregates, is still not fully understood. One of the reasons is heterogeneity in the chlorosome structure which gives rise to a hierarchy of structural and energy disorder. In this report, we for the first time directly measure absorption linear dichroism (LD) on individual, isolated chlorosomes. Together with fluorescence-detected three-dimensional LD, these experiments reveal a large amount of disorder on the single-chlorosome level in the form of distributions of LD observables in chlorosomes from wild-type bacterium Chlorobaculum tepidum . Fluorescence spectral parameters, such as peak wavelength and bandwidth, are measures of the aggregate excitonic properties. These parameters obtained on individual chlorosomes are uncorrelated with the observed LD distributions and indicate that the observed disorder is due to inner structural disorder along the chlorosome long axis. The excitonic disorder that is also present is not manifested in the LD distributions. Limiting values of the LD parameter distributions, which are relatively free of the effect of structural disorder, define a range of angles at which the excitonic dipole moment is oriented with respect to the surface of the two-dimensional aggregate of BChl molecules. Experiments on chlorosomes of a triple mutant of Chlorobaculum tepidum show that the mutant chlorosomes have significantly less inner structural disorder and higher symmetry, compatible with a model of well-ordered concentric cylinders. Different values of the transition dipole moment orientations are consistent with a different molecular level organization of BChl's in the mutant and wild-type chlorosomes.     

Hydroclathrus clathratus marine alga as a green inhibitor of acid corrosion of mild steel

The corrosion inhibitive and adsorption behaviors of Hydroclathrus clathratus on mild steel in 1 M HCl and 1 M H₂SO₄ solutions at 303, 313 and 323 K were investigated by weight loss, electrochemical, and surface analysis techniques. The results show that H. clathratus acts as an inhibitor of corrosion of mild steel in acid media. The inhibition efficiency was found to increase with increase in inhibitor concentration but to decrease with rise in temperature, suggestive of physical adsorption. The adsorption of the inhibitor onto the mild steel surface was found to follow the Temkin adsorption isotherm. The inhibition mechanism was further corroborated by the results obtained from electrochemical methods. Scanning electron microscopy (SEM) and atomic force microscopy (AFM) analyses supported the inhibitive action of the alga against acid corrosion of mild steel.     

Effect of cadmium on the accumulation of arsenic in a marine green alga,Dunaliellasp.

To investigate the effect of cadmium on the accumulation of arsenic by Dunaliella sp., the arsenic accumulated in the alga was determined as a function of time for coexistence of the algae with arsenic and cadmium, with batch methodology. Growth of Dunaliella sp. was affected by addition of arsenic (Na₂HAsO₄.7H₂O) and cadmium (CdCl.2.5H₂O). Growth inhibition of Dunaliella sp. was accelerated by coexistence of arsenic and cadmium. The content of arsenic in Dunaliella sp. became a maximum at 15 h after exposure. The arsenic content in the cells was influenced by addition of cadmium to the solution; the arsenic content in the alga derived from growth in a 10 mg As dm ^?3 solution decreased from 2.7 mg g^?1 in the absence of cadmium to 0.35 mg g^?1 for the addition of 100 mg Cd dm^?3. Dunaliella sp. accumulated cadmium in large quantities but, in conditions of coexistence with arsenic and cadmium, the cadmium content in cells decreased with an increase in the concentration of arsenic in the growth medium Cadmium accumulation by Dunaliella sp. was observed in dead cells although arsenic accumulation was not observed. About 85% of arsenic in the cells was in the water-soluble fraction. On the other hand, about 42% of cadmium in the cells was in the water-soluble fraction, and about 55% was in a fraction soluble in cold trichloroacetic acid.