4‐Aminopyridinium 4‐aminobenzoate dihydrate and 4‐aminopyridinium nicotinate

In the title compounds, 4‐aminopyridinium 4‐aminobenzoate dihydrate, C₇H₆NO₂⁻·C₅H₇N₂⁺·2H₂O, (I), and 4‐aminopyridinium nicotinate, C₅H₇N₂⁺·C₆H₄NO₂⁻, (II), the aromatic N atoms of the 4‐aminopyridinium cations are protonated. In (I), the asymmetric unit is composed of two 4‐aminopyridinium cations, two 4‐aminobenzoate anions and four water molecules, and the compound crystallizes in a noncentrosymmetric space group. The two sets of independent molecules of (I) are related by a centre of symmetry which is not part of the space group. In (I), the protonated pyridinium ring H atoms are involved in bifurcated hydrogen bonding with carboxylate O atoms to form an R₁²(4) ring motif. The water molecules link the ions to form a two‐dimensional network along the (10) plane. In (II), an intramolecular bifurcated hydrogen bond generates an R₁²(4) ring motif and inter‐ion hydrogen bonding generates an R₄²(16) ring motif. The packing of adduct (II) is consolidated via N—H...O and N—H...N hydrogen bonds to form a two‐dimensional network along the (10) plane.     

Alkyl levulinates as `green chemistry' precursors: butane‐1,4‐diyl bis(4‐oxopentanoate) and hexane‐1,6‐diyl bis(4‐oxopentanoate)

Levulinic acid derivatives are potential `green chemistry' renewably sourced molecules with utility in industrial coatings applications. Suitable single crystals of the centrosymmetric title compounds, C₁₄H₂₂O₆ and C₁₆H₂₆O₆, respectively, were obtained with difficulty. The data for the latter hexane‐1,6‐diyl compound were extracted from the major fragment of a three‐component twinned crystal. Both compounds crystallize in similar‐sized unit cells with identical symmetry, utilizing the same weak nonconventional attractive C—H...O(ketone) hydrogen bonds via C(4) and C(5) motifs, which expand to R²₂(30) ring and C²₂(14) chain motifs. Their different packing orientations in similar‐sized unit cells suggest that crystal growth involving packing mixes could lead to intergrowths or twins.     

A chain of π‐stacked molecules in 4‐(2‐chlorophenyl)pyrrolo[1,2‐a]quinoxaline and a hydrogen‐bonded sheet in (4RS)‐4‐(1,3‐1,3‐benzodioxol‐6‐yl)‐4,5‐dihydropyrrolo[1,2‐a]quinoxaline

In the molecule of 4‐(2‐chlorophenyl)pyrrolo[1,2‐a]quinoxaline, C₁₇H₁₁ClN₂, (I), the bond lengths are consistent with electron delocalization in the two outer rings of the fused tricyclic system, with a localized double bond in the central ring. The molecules of (I) are linked into chains by a π–π stacking interaction. In (4RS)‐4‐(1,3‐benzodioxol‐6‐yl)‐4,5‐dihydropyrrolo[1,2‐a]quinoxaline, C₁₈H₁₄N₂O₂, (II), the central ring of the fused tricyclic system adopts a conformation intermediate between screw‐boat and half‐chair forms. A combination of N—H...O and C—H...π(arene) hydrogen bonds links the molecules of (II) into a sheet. Comparisons are made with related compounds.     

A solid‐state oxidation of 1,1,3,3‐tetramethylguanidinium 4‐methylbenzenesulfinate to 1,1,3,3‐tetramethylguanidinium 4‐methylbenzenesulfonate

The organic acid–base complex 1,1,3,3‐tetramethylguanidinium 4‐methylbenzenesulfonate, C₅H₁₄N₃⁺·C₇H₇O₃S⁻, was obtained from the corresponding 1,1,3,3‐tetramethylguanidinium 4‐methylbenzenesulfinate complex, C₅H₁₄N₃⁺·C₇H₇O₂S⁻, by solid‐state oxidation in air. Comparison of the two crystal structures reveals similar packing arrangements in the monoclinic space group P2₁/c, with centrosymmetric 2:2 tetramers being connected by four strong N—H...O=S hydrogen bonds between the imine N atoms of two 1,1,3,3‐tetramethylguanidinium bases and the O atoms of two acid molecules.     

{5′‐O‐[Bis(4‐methoxyphenyl)(phenyl)methyl]‐2′‐deoxy‐β‐D‐threopentofuranosyl}thymine ethyl acetate 0.25‐solvate

The title compound, C₃₁H₃₂N₂O₇·0.25C₄H₈O₂, is a key intermediate in the synthesis of [¹⁸F]fluorine‐labelled thymidine (¹⁸F‐FLT), which is the most widely used molecular imaging probe for positron emission tomography (PET). The crystallographic asymmetric unit contains two independent thymine molecules plus one partially occupied site for an ethyl acetate molecule. The two independent thymine molecules show similar geometrical features, except that the dimethoxytrityl groups adopt different orientations with respect to the remainder of the molecule. Each thymine base adopts an anti conformation with respect to the attached deoxyribose ring, and the deoxyribose rings show C3‐endo puckering. The conformation of the side chain at the C1 position of the deoxyribose ring is gauche+. Intermolecular N—H...O and O—H...O hydrogen bonds link the molecules into one‐dimensional chains.     

4‐(Pyrrol‐1‐yl)‐1,2,4‐triazole

The asymmetric unit of the title compound, C₆H₆N₄, comprises one and a half molecules with a C₂ axis through the second molecule. Each molecule consists of two planar five‐membered rings connected by a triazole–pyrrole N—N bond with the triazole ring close to being at right angles to the pyrrole ring. The molecules are linked by C—H...N hydrogen bonds and weaker offset face‐to‐face π–π interactions.     

Poly[[(μ2‐biphenyl‐2,4′‐dicarboxylato)[μ2‐1,4‐bis(imidazol‐1‐ylmethyl)benzene]cadmium(II)] 0.15‐hydrate]

The asymmetric unit of the title two‐dimensional coordination polymer, {[Cd(C₁₄H₈O₄)(C₁₄H₁₄N₄)]·0.15H₂O}_n, is composed of one Cd^II cation, one biphenyl‐2,4′‐dicarboxylate (bpdc) anion, one 1,4‐bis(imidazol‐1‐ylmethyl)benzene (bix) ligand and 0.15 solvent water molecules. The coordination environment of the Cd^II cation is defined by four carboxylate O atoms from two different bpdc anions in a chelating mode and two N atoms from two distinct bix ligands, constructing a distorted trigonal prism polyhedron. Two inversion‐related Cd^II cations are bridged together by two positionally disordered bpdc anions, forming a 22‐membered ring with a Cd...Cd distance of 9.1966 (9) Å. These rings are then further linked by two bix ligands, extending into a two‐dimensional layer along (102) with 6³ topology.     

Hydrogen‐bonded dimers in 3‐amino‐4‐anilino‐1H‐isochromen‐1‐one and a hydrogen‐bonded sheet in 3‐amino‐4‐[methyl(phenyl)amino]‐1H‐isochromen‐1‐one

The molecules of 3‐amino‐4‐anilino‐1H‐isochromen‐1‐one, C₁₅H₁₂N₂O₂, (I), and 3‐amino‐4‐[methyl(phenyl)amino]‐1H‐isochromen‐1‐one, C₁₆H₁₄N₂O₂, (II), adopt very similar conformations, with the substituted amino group PhNR, where R = H in (I) and R = Me in (II), almost orthogonal to the adjacent heterocyclic ring. The molecules of (I) are linked into cyclic centrosymmetric dimers by pairs of N—H...O hydrogen bonds, while those of (II) are linked into complex sheets by a combination of one three‐centre N—H...(O)₂ hydrogen bond, one two‐centre C—H...O hydrogen bond and two C—H...π(arene) hydrogen bonds.     

From small structural modifications to adjustment of structurally dependent properties: 1‐methyl‐3,5‐bis[(E)‐2‐thienylidene]‐4‐piperidone and 3,5‐bis[(E)‐5‐bromo‐2‐thienylidene]‐1‐methyl‐4‐piperidone

The molecules of the title compounds, C₁₆H₁₅NOS₂, (I), and C₁₆H₁₃Br₂NOS₂, (II), are E,E‐isomers and consist of an extensive conjugated system, which determines their molecular geometries. Compound (I) crystallizes in the monoclinic space group P2₁/c. It has one thiophene ring disordered over two positions, with a minor component contribution of 0.100 (3). Compound (II) crystallizes in the noncentrosymmetric orthorhombic space group Pca2₁ with two independent molecules in the unit cell. These molecules are related by a noncrystallographic pseudo‐inversion center and possess very similar geometries. The crystal packings of (I) and (II) have a topologically common structural motif, viz. stacks along the b axis, in which the molecules are bound by weak C—H...O hydrogen bonds. The noncentrosymmetric packing of (II) is governed by attractive intermolecular Br...Br and Br...N interactions, which are also responsible for the very high density of (II) (1.861 Mg m⁻³).     

Supramolecular architectures in the salt trimethoprimium ferrocene‐1‐carboxylate and the cocrystal 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–ferrocene‐1‐carboxylic acid (1/1)

In the salt trimethoprimium ferrocenecarboxylate [systematic name: 2,4‐diamino‐5‐(3,4,5‐trimethoxybenzyl)pyrimidin‐1‐ium ferrocene‐1‐carboxylate], (C₁₄H₁₉N₄O₃)[Fe(C₅H₅)(C₆H₄O₂)], (I), of the antibacterial compound trimethoprim, the carboxylate group interacts with the protonated aminopyrimidine group of trimethoprim via two N—H…O hydrogen bonds, generating a robust R ₂²(8) ring motif (heterosynthon). However, in the cocrystal 4‐amino‐5‐chloro‐2,6‐dimethylpyrimidine–ferrocene‐1‐carboxylic acid (1/1), [Fe(C₅H₅)(C₆H₅O₂)]·C₆H₈ClN₃, (II), the carboxyl–aminopyrimidine interaction [R ₂²(8) motif] is absent. The carboxyl group interacts with the pyrimidine ring via a single O—H…N hydrogen bond. The pyrimidine rings, however, form base pairs via a pair of N—H…N hydrogen bonds, generating an R ₂²(8) supramolecular homosynthon. In salt (I), the unsubstituted cyclopentadienyl ring is disordered over two positions, with a refined site‐occupation ratio of 0.573 (10):0.427 (10). In this study, the two five‐membered cyclopentadienyl (Cp) rings of ferrocene are in a staggered conformation, as is evident from the C…Cg …Cg …C pseudo‐torsion angles, which are in the range 36.13–37.53° for (I) and 22.58–23.46° for (II). Regarding the Cp ring of the minor component in salt (I), the geometry of the ferrocene ring is in an eclipsed conformation, as is evident from the C…Cg …Cg …C pseudo‐torsion angles, which are in the range 79.26–80.94°. Both crystal structures are further stabilized by weak π–π interactions.     

Hydrogen‐bonded chains of rings in 1‐(4‐chloroanilinomethyl)‐5‐(4‐chlorophenyl)‐1,3,5‐triazinane‐2‐thione and hydrogen‐bonded sheets in 1‐anilinomethyl‐5‐phenyl‐1,3,5‐triazinane‐2‐thione

In 1‐(4‐chloroanilinomethyl)‐5‐(4‐chlorophenyl)‐1,3,5‐triazinane‐2‐thione, C₁₆H₁₆Cl₂N₄S, there are two independent molecules in the asymmetric unit which form inversion dimers via two weak N—H...S hydrogen bonds. The dimers are then linked into C(9)C(14) chains by a C—H...S hydrogen bond and a C—H...Cl contact. In 1‐(anilinomethyl)‐5‐phenyl‐1,3,5‐triazinane‐2‐thione, C₁₆H₁₈N₄S, molecules are linked into complex sheets via a combination of N—H...S and C—H...π hydrogen bonds.     

2‐[(E)‐(4‐Hydroxy‐3‐methoxybenzylidene)amino]‐N‐(2‐methylphenyl)‐4,5,6,7‐tetrahydro‐1‐benzothiophene‐3‐carboxamide

The title compound, C₂₄H₂₄N₂O₃S, exhibits antifungal and antibacterial properties. The compound crystallizes with two molecules in the asymmetric unit, with one molecule exhibiting `orientational disorder' in the crystal structure with respect to the cyclohexene ring. The o‐toluidine groups in both molecules are noncoplanar with the respective cyclohexene‐fused thiophene ring. In both molecules, there is an intramolecular N—H...N hydrogen bond forming a pseudo‐six‐membered ring which locks the molecular conformation and eliminates conformational flexibility. The crystal structure is stabilized by O—H...O hydrogen bonds; both molecules in the asymmetric unit form independent chains, each such chain consisting of alternating `ordered' and `disordered' molecules in the crystal lattice.     

Enantiomerically pure (1S,5R) and racemic 3‐(1‐benzothiophen‐2‐yl)‐8‐azoniabicyclo[3.2.1]oct‐2‐ene acetate

The title compound, C₁₅H₁₆NS⁺·C₂H₃O₂⁻, has been crystallized as both a pure enantiomer (1S,5R) and a racemate. The racemate crystallizes in the space group Cc, with molecules of opposite handedness related to each other by the action of the c‐glide. The enantiomer is essentially isostructural with the racemate, except that the glide symmetry is violated by interchange of CH and CH₂ groups within the seven‐membered ring. The space‐group symmetry is reduced to P1 with two molecules in the asymmetric unit. The enantiomer structure shows disorder of the thiophene ring for one of the molecules in the asymmetric unit. The major component of the disorder has the thiophene ring in the same position as in the racemate, but generates a higher‐energy molecular conformation. The minor disorder component has different intermolecular interactions but retains a more stable molecular conformation.     

Hydrogen‐bonded supramolecule of N,N′‐bis(4‐pyridylmethyl)oxalamide and a zigzag chain structure of catena‐poly[[[dichloridocobalt(II)]‐μ‐N,N′‐bis(4‐pyridylmethyl)oxalamide‐κ2N4:N4′] hemihydrate]

N,N′‐Bis(4‐pyridylmethyl)oxalamide, C₁₄H₁₄N₄O₂, exists as a dimer which is extended into a two‐dimensional network with other dimers through pyridine–amide hydrogen bonds. The crystal structure of the title coordination polymer, {[CoCl₂(C₁₄H₁₄N₄O₂)]·0.5H₂O}_n, features a one‐dimensional zigzag chain, in which the cobalt ion sits at a twofold symmetry position and adopts a tetrahedral geometry, and the bridging ligand lies on an inversion center and connects to Co^II ions in a bis‐monodentate mode. Furthermore, two interwoven chains create a cavity of ca 8.6 × 8.6 Å, which produces a three‐dimensional channel. Water molecules are held in the channel by hydrogen bonds.     

Hydrogen‐bonding and C—H⋯π interactions in 7‐hydroxy‐3‐methoxy‐4‐methyl‐5,6,7,8‐tetrahydro­pyrido­[1,2‐c]pyrimidin‐1(9H)‐one

In the title compound, C₁₀H₁₄N₂O₃, a pyrimidine ring is fused with a piperidine ring. The pyrimidine ring is planar, whereas the piperidine ring adopts a half‐chair conformation. The molecules of the title compound are connected via O—H⋯O intermolecular hydrogen bonds into infinite zigzag chains. The pyrimidine ring is involved in three C—H⋯π interactions, which link the hydrogen‐bonded chains into a three‐dimensional framework.     

Poly[[tetraaquabis(μ2‐2‐nitroterephthalato‐κ3O1:O4,O4′)(μ2‐piperazine‐κ3N:N′)dicadmium(II)] dihydrate]

In the title complex, {[Cd₂(C₈H₃NO₆)₂(C₄H₁₀N₂)(H₂O)₄]·2H₂O}_n, the Cd^II atoms show distorted octahedral coordination. The two carboxylate groups of the dianionic 2‐nitroterephthalate ligand adopt monodentate and 1,2‐bridging modes. The piperazine molecule is in a chair conformation and lies on a crystallographic inversion centre. The Cd^II atoms are connected via three O atoms from two carboxylate groups and two N atoms from piperazine molecules to form a two‐dimensional macro‐ring layer structure. These layers are further aggregated to form a three‐dimensional structure via rich intra‐ and interlayer hydrogen‐bonding networks. This study illustrates that, by using the labile Cd^II salt and a combination of 2‐nitroterephthalate and piperazine as ligands, it is possible to generate interesting metal–organic frameworks with rich intra‐ and interlayer O—H...O hydrogen‐bonding networks.     

3,17‐Dioxoandrost‐4‐en‐4‐yl acetate

The title compound, C₂₁H₂₈O₄, has a 4‐acetoxy substituent positioned on the steroid α face. The six‐membered ring A assumes a conformation intermediate between 1α,2β‐half chair and 1α‐sofa. A long Csp³—Csp³ bond is observed in ring B and reproduced in quantum‐mechanical ab initio calculations of the isolated molecule using a molecular‐orbital Hartree–Fock method. Cohesion of the crystal can be attributed to van der Waals interactions and weak C—H...O hydrogen bonds.     

A new polymorph of 1,4‐bis(imidazol‐1‐ylmethyl)benzene dihydrate and its hydrogen‐bonded fivefold interpenetrated CdSO4 network

Single crystals of a new polymorph of 1,4‐bis(imidazol‐1‐ylmethyl)benzene dihydrate (bix·2H₂O), C₁₄H₁₄N₄·2H₂O, have been obtained by the hydrothermal method. The asymmetric unit is composed of two independent half‐bix molecules, one on an inversion center and one on a twofold axial site, and two water molecules. The disordered water molecules link into discrete tetrameric water units via two O—H...O hydrogen bonds, forming planar R₄⁴(8) rings. These tetrameric water units and bix molecules are further linked by two O—H...N hydrogen bonds into a three‐dimensional network in which an (106) hydrogen‐bonded ring is observed. These large rings lead to the formation of a fivefold interpenetrated network. If both the tetrameric water units and the bix molecules can be regarded as connected nodes, one single three‐dimensional net can then be rationalized as a CdSO₄ network. This study indicates that topological methodology can be applied in some cases in order to understand the inherent characteristics of some hydrogen‐bonded supramolecular assemblies.     

3‐O‐Acetyl‐4‐deoxy‐4‐iodo‐β‐d‐fructo­furan­osyl 2,3,6‐tri‐O‐acetyl‐4‐chloro‐4‐deoxy‐α‐d‐gluco­pyran­oside

At 160 K, the gluco­pyran­osyl ring of the title compound, C₂₀H₂₈ClIO₁₃, has a near‐ideal ⁴C₁ conformation and the fructo­furan­osyl ring has a twist ⁴T₃ conformation. The two hydroxy groups are involved in intra‐ and intermolecular hydrogen bonds, with the latter interactions linking the mol­ecules into infinite one‐dimensional chains. The absolute configuration of the mol­ecule has been determined.     

3,4,6‐Tri‐O‐acetyl‐1,2‐O‐[1‐(exo‐ethoxy)ethylidene]‐β‐d‐mannopyranose 0.11‐hydrate

The title compound, C₁₆H₂₄O₁₀·0.11H₂O, is a key intermediate in the synthesis of 2‐deoxy‐2‐[¹⁸F]fluoro‐d ‐glucose (¹⁸F‐FDG), which is the most widely used molecular‐imaging probe for positron emission tomography (PET). The crystal structure has two independent molecules (A and B) in the asymmetric unit, with closely comparable geometries. The pyranose ring adopts a ⁴C₁ conformation [Cremer–Pople puckering parameters: Q = 0.553 (2) Å, θ = 16.2 (2)° and ϕ = 290.4 (8)° for molecule A, and Q = 0.529 (2) Å, θ =15.3 (3)° and ϕ = 268.2 (9)° for molecule B], and the dioxolane ring adopts an envelope conformation. The chiral centre in the dioxolane ring, introduced during the synthesis of the compound, has an R configuration, with the ethoxy group exo to the mannopyranose ring. The asymmetric unit also contains one water molecule with a refined site‐occupancy factor of 0.222 (8), which bridges between molecules A and B via O—H...O hydrogen bonds.