Synthesis and crystal structure of a supramolecular adduct of the aqua nitrato complex of gadolinium [Gd(NO<Subscript>3</Subscript>)(H<Subscript>2</Subscript>O)<Subscript>7</Subscript>]<Superscript>2+</Superscript> with macrocyclic cavitand cucurbit[6]uril

A supramolecular adduct of gadolinium aqua nitrato complex and cucurbit[6]uril { [Gd(NO₃)(H₂O)₇](C₅H₅N)@(C₃₆H₃₆N₂₄O₁₂)}(NO₃)₂·10H₂O is obtained by slow diffusion of methanol into an aqueous solution containing gadolinium nitrate, pyridine, and cucurbit[6]uril. According to single crystal X-ray diffraction data, water molecules coordinated to metal atom make hydrogen bonds to polarized carbonyl groups of the macrocycle. The heptaaquanitratogadolinium(III) [Gd(NO₃)(H₂O)₇]²⁺ cation is structurally characterized for the first time. Crystal system is triclinic, space group \(P\overline 1 \), a = 12.3137(4) Å, b = 14.2334(5) Å, c = 19.5629(6) Å; α = 80.850(1)°, β = 86.879(1)°, γ = 68.855(1)°; V = 3157.15(18) ų, Z = 2. Oriented hydrogen-bonded chains of alternating cucurbit[6]uril molecules and gadolinium aqua cations form in the crystal structure.     

Use of the macrocyclic ligand cucurbit[6]uril for isolation of tetranuclear lanthanide aquahydroxo-carboxylate complexes from aqueous solutions

The tetranuclear lanthanide complexes {[Ln₄(μ₃-OH)₄(μ₂-OH)₂(C₅NH₄COO)₂ (H₂O)₄-(C₃₆H₃₆N₂₄O₁₂)₂][Ln(H₂O)₈]_1.5[Ln(H₂O)₆(NO₃)₂]_0.5} (NO₃)₉·nH₂O (Ln = Ho, Gd, or Er) were prepared by heating (130 °C) aqueous solutions of lanthanide nitrates, cucurbit[6]uril (C₃₆H₃₆N₂₄O₁₂), and 4-cyanopyridine. The tetradentate coordination of the macrocyclic cucurbit[6]uril ligands through the portals leads to the formation of sandwich compounds, in which the tetranuclear hydroxo complex is located between two macrocyclic molecules. The polynuclear complexes are additionally stabilized by the chelating effect of the isonicotinate ligands generated by hydrolysis of 4-cyanopyridine. In the complexes, the aromatic moiety of the isonicotinate ion is encapsulated into the hydrophobic inner cavity of cucurbit[6]uril. In the absence of cucurbit[6]uril, the reaction with 4-cyanopyridine produces only the polymeric complexes [Nd(C₅NH₄COO)₃(H₂O)₂] and [Ln(C₅NH₄COO)₂(H₂O)₄]NO₃ (Ln = Pr, Sm, or Gd), whose structures were established by X-ray diffraction. In water and aqueous solutions of nonionic and cationic surfactants, irreversible changes of the tetranuclear fragment of the complex (Ln = Gd) were observed after storage for two days, whereas the anionic surfactant stabilizes the complexes. Dedicated to Academician O. M. Nefedov on the occasion of his 75th birthday. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 1885–1894, November, 2006.     

Synthesis and crystal structures of supramolecular compounds of polynuclear aluminum(III) aqua hydroxo complexes with cucurbit[6]uril

Supramolecular compounds of the di-, trideca-, and triacontanuclear aluminum aqua hydroxo complexes, viz., [Al₂(OH)₂(H₂O)₈]⁴⁺, [Al₁₂(AlO₄)(OH)₂₄(H₂O)₁₂]⁷⁺, and [Al₃₀O₈(OH)₅₆(H₂O)₂₆]¹⁸⁺, respectively, with the organic macrocyclic cavitand cucurbit[6]uril (C₃₆H₃₆N₂₄O₁₂) were prepared by evaporation of aqueous solutions of aluminum nitrate and cucurbit[6]uril after the addition of pyridine, ammonia, KOH, or NaOH at pH 3.1–3.8. X-ray diffraction study demonstrated that the aqua hydroxo complexes are linked to the macrocycle through hydrogen bonds between the hydroxo and aqua ligands of the polycations and the portal oxygen atoms of cucurbit[6]uril. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 261—268, February, 2006.     

Synthesis and crystal structures of PrIII and NdIII complexes with the macrocyclic cavitand cucurbit[6]uril

The [{Pr(NO₃)₂(H₂O)₃}{Pr(NO₃)(H₂O)₄} (C₃₆H₃₆N₂₄O₁₂)](NO₃)₃·4H₂O and [{Nd(NO₃)(H₂O)₄} ₂(NO₃@C₃₆H₃₆N₂₄O₁₂)][Nd(NO₃)₆] complexes were prepared by heating a mixture of lanthanide nitrates, cucurbit[6]uril, and water in a sealed tube. X-ray diffraction study demonstrated that the metal atoms in the former complex are linked to the macrocycle through tridentate coordination of the portal oxygen atoms of cucurbit[6]uril to the praseodymium(III) cation. The neodymium(III) complex is the first example of lanthanide compounds with cucurbit[6]uril belonging to coordination polymers. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1511–1517, September, 2006.     

Synthesis and crystal structure of a supramolecular adduct of trinuclear molybdenum oxocluster with macrocyclic cavitand cucurbit[5]uril containing the included ionic associate Na<Superscript>+</Superscript>...Cl...Na<Superscript>+</Superscript>

The compound of composition [{Mo₃O₄(H₂O)₆Cl₃}₂(Na₂Cl⊂ C₃₀H₃₀N ₂₀O₁₀)]Cl₃⋅14H₂O (1) was prepared by evaporation of a hydrochloric acid solution containing NaCl, the trinuclear aqua complex [Mo₃O₄(H₂O)₉]⁴⁺, and the macrocyclic cavitand cucurbit[5]uril (C₃₀H₃₀N₂₀O₁₀). X-ray diffraction analysis demonstrated that the cucurbit[5]uril molecule is closed on both sides by the cluster cations through hydrogen bonding between the CO groups of the cucurbit[5]uril portals and the aqua ligands of the oxo cluster. The inner cavity of the supramolecular adduct includes an unusual ionic associate Na⁺...Cl...Na⁺. The sodium cations are coordinated by five carbonyl oxygen atoms of each portal of the macrocycle. Compound 1 is the first structurally characterized complex, in which the macrocyclic cucurbit[5]uril ligand is directly coordinated to the alkali metal cation. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1513–1517, July, 2005.     

Anion encapsulation by Ln(III)/K(I) heterobismetal-capped cucurbit[5]uril

Three Ln(III)/K(I) (Ln = La, Ce and Nd) heterobismetal-capped cucurbit[5]uril molecular capsules, {[LaK(C₃₀H₃₀N₂₀O₁₀)Cl]Cl(H₂O)₃}Cl₂·8H₂O (1), {[CeK(C₃₀H₃₀N₂₀O₁₀)Cl]Cl(H₂O)₃}Cl₄(H₃O)₂ ^2 + ·8H₂O (2) and {[NdK(C₃₀H₃₀N₂₀O₁₀)Cl]Cl(H₂O)₃}Cl₂·12.5H₂O (3), were synthesised by self-assembly in aqueous solution, and their anion encapsulation property was confirmed by X-ray crystallography. The effect of the lanthanide cation radius on the structure of the heterobismetal-capped cucurbit[5]uril molecular capsules has been investigated.     

Supramolecular approach to crystallization of polynuclear chromium(III) aqua hydroxo complexes: synthesis and crystal structures of complexes [Cr2(OH)2(H2O)8]4+ and [Cr4(OH)6(H2O)12]6+ with cucurbit[n]uril (n = 7, 8)

Supramolecular compounds of the compositions {[Cr₂(OH)₂(H₂O)₈](C₄₂H₄₂N₂₈O₁₄)₂}-(NO₃)₄·18.75H₂O (1) and {[Cr₄(OH)₆(H₂O)₁₂](C₄₈H₄₈N₃₂O₁₆)₃(NO₃)₆·55H₂O (2) were synthesized from aqueous solutions of chromium(III) nitrate and the macrocyclic cavitand cucurbit[n]uril (C_6n H_6n N_4n O_2n , where n = 7 or 8, respectively). According to the X-ray diffraction study, the polynuclear chromium aqua complexes are disposed in cavities formed by the cucurbit[n]uril molecules and are linked to these molecules through hydrogen bonds between the hydroxo and aqua ligands of the polycations and the portal oxygen atoms of the macrocycles. Compound 1 is the first example of supramolecular compounds of cucurbit[7]uril with metal aqua complexes. The isolation of the supramolecular adduct with cucurbit[8]uril 2 in the single-crystalline state allows the determination of the structure of the tetranuclear chromium aqua complex having an adamantane-like structure, [Cr₄(μ₂-OH)₆(H₂O)₁₂]⁶⁺, which has been previously unknown in the solid state.     

Synthesis and Crystal Structure of Macrocyclic Cavitand Cucurbit[5]uril and Its Supramolecular Adduct with Cu（Ⅱ）

The first supramolecular adduct (H₃O)₂[Cu(H₂O)₄](SO₄)₂·2(C₃₀H₃₀N₂₀O₁₀)·₂₄(H₂O) based on cucurbit[5]uril was synthesized and characterized by single crystal X‐ray diffraction analysis. In the adduct, copper ion is coordinated by four oxygen atoms from H₂O. The latter links two cucurbit[5]uril molecules due to a complicated hydrogen bonding containing lattice water molecules.     

New lanthanide-based complexes constructed from cucurbit[6]uril: Synthesis,structures and properties

Three lanthanide-based complexes, {Gd₂(H₂O)₁₀(CB[6])₂}·CB[6]·6Cl·12H₂O (1), {[Gd₂(H₂O)₈CB[6]₂]·(CuCl₄)·4Cl·46H₂O}_n (2), and {Dy₂(NO₃)₂(H₂O)₁₀(CB[6])}·4NO₃·14H₂O (3) (CB[6] = cucurbit[6]uril), were prepared with cucurbit[6]uril (CB[6]). These complexes were characterized by single-crystal X-ray diffraction, elemental analysis, FT-IR spectroscopy, UV–Vis spectroscopy, thermogravimetric analysis and magnetization measurements. Crystallographic results showed that 1 and 3 are dinuclear and crystallize in the triclinic space group Pī, whereas 2 is a 1-D zigzag supramolecular chain that crystallizes in the monoclinic system in C2/c. The results indicated that temperature has a big effect on the supramolecular assemblies and a different structure inducer also leads to the formation of different coordination polymers. Frequency dependence in the ac susceptibility signals was observed in 3.     

二甲基取代五元瓜环与钾离子和钆离子的配位结构

利用X-射线单晶衍射技术表征了2个二甲基取代五元瓜环(DMeQ[5])与金属离子形成的配合物的晶体结构,2个配合物分别为{[K2(H2O)3DMeQ[5]}I2.5H2O(1)和{[Gd(H2O)3][K(H2O)][(NO3)@DMeQ[5]]}(NO3)3.5H2O(2)。与DMeQ[5]和钆离子形成的配合物的结构不同的是,配合物1和2中每个DMeQ[5]端口的所有羰基氧原子都和钾离子或钆离子配位,形成全封闭结构。     

Crystal structure of a La(III) complex with macrocyclic cavitand cucurbit[6]uril

Slow evaporation in air of a lanthanum nitrate solution containing macrocyclic cavitand cucurbit[6]uril yields a complex of the composition of [La(H₂O)₆(X@C₃₆H₃₆N₂₄O₁₂)(NO₃)](NO₃)₂· 6.96H₂O (X = 0.5C₅H₅N + 0.5H₂O). The complex is structurally characterized using single crystal X-ray diffraction. Lanthanum atoms are coordinated with oxygen atoms of carbonyl groups of cucurbit[6]uril portals. The compound crystallizes in the orthorhombic crystal system, space group Pnn2, unit cell parameters (150 K): a = 11.997(2) Å, b = 17.093(3) Å, c = 14.133(3) Å, V = 2899.3(10) ų, Z = 2. Lanthanum atoms are disordered, alternative positions being related by the two-fold axis. The complex has an island structure. A pyridine molecule occupies an internal cavity of one half of cucurbit[6]uril molecules, while a water molecule occupies the other.     

Chloroaqua Complexes [M3S4(H2O)9?xClx](4?x)+ (M = Mo, W; x = 4, 6, 7) and Their Supramolecular Compounds with Cucur[8]uril

Compounds of trigonal cluster chloroaqua complexes with cucurbit[8]uril were synthesized by slowly evaporating HCl solutions of chalcogenides heterometallic cubane cluster complexes of molybdenum and tungsten with cucurbit[8]uril in air; the complexes were characterized by X-ray diffraction analysis: (H₃O)₈[Mo₃S₄(H₂O)_2.5Cl_6.5]₂Cl(PdCl₄)·(C₄₈H₄₈N₃₂O₁₆)· 29H₂O (a = 13.3183(17) Å, b = 13.7104(18) Å, c = 18.225(3) Å; α = 80.263(3)°, β = 77. 958(3)°, γ = 87.149(4)°, V = 3207.4(7) ų, space group P , Z = 1, ρ(calc) = 1.900 g/cm³), (H₃O)₄ [Mo₃S₄(H₂O)₃Cl₆]₂·(C₄₈H₄₈N₃₂O₁₆)₃·68H₂O (a = 21.413(6) Å, c = 49.832(10) Å; γ = 120°, V = 19788(8) ų, space group R , Z = 3, ρ(calc) = 1.695 g/cm³), (H₃O)₆ [Mo₃S₄(H₂O)₃Cl₆]₂Cl₂·(C₄₈H₄₈N₃₂O₁₆)·12H₂O (a = 15.881(2) Å, b = 17.191(2) Å, c = 23.276(4) Å; β = 98.865(15)°, V = 6278.7(15) ų, space group P2₁/c, Z = 2, ρ(calc) = 1.638 g/cm³), [W₃S₄(H₂O)₅Cl₄]₂·(C₄₈H₄₈N₃₂O₁₆)₃·35H₂O (a = 21.038(3) Å; α = 61.20(1)°, V = 6762.0(14) ų, space group R , Z = 1, ρ(calc) = 1.582 g/cm³). The [Mo₃S₄(H₂O)₃Cl₆]²⁻ anion complex was isolated as three geometrical isomers.Original Russian Text Copyright © 2004 by E. V. Chubarova, D. G. Samsonenko, H. G. Platas, F. M. Dolgushin, A. V. Gerasimenko, M. N. Sokolov, Z. A. Starikova, M. Yu. Antipin, and V. P. Fedin__________Translated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 6, pp. 1049–1058, November–December, 2004.     

Metal ion-assisted assembly of one-dimensional polyrotaxanes incorporating cucurbit[6]uril

Three cucurbit[6]uril (CB[6])-based polyrotaxanes [Cu(H₂ C6N4)(CB[6])]Cl₄·12H₂O (1), [Co(H₂ C6N4)(CB[6])]Cl₄·14H₂O (2) and [Ag(C6N4)(CB[6])]NO₃·7H₂O (3) are prepared using N,N′-bis(4-pyridylmethyl)-1,6-hexanediamine (C6N4) threading into CB[6]'s and metal ions' assistance. Single-crystal X-ray diffraction analyses reveal that polyrotaxanes 1, 2 and 3 all have 1D chain structure where 1 and 2 are linear and 3 has two shapes, linear and sawtooth, respectively. The effects of guest molecules, metal and counter ions as well as intermolecular weak interactions on the architectures of polyrotaxanes are discussed.     

Synthesis and Crystal Structure of Supramolecular Adducts of Macrocyclic Cavitand Cucurbituril with Chromium(III) and Nickel(II) Aqua Complexes

Supramolecular compounds {[Cr(H₂O)₆](C₃₆H₃₆N₂₄O₁₂)}(NO₃)₃ · 13H₂O (I) and {[Ni(H₂O)₆]₂(C₃₆H₃₆N₂₄O₁₂)}(SO₄)₂ · 16H₂O (II) were obtained from aqueous solutions of chromium nitrate or nickel sulfate and the macrocyclic cavitand cucurbituril. According to X-ray diffraction analysis data, the cucurbituril molecule is closed from both sides by metal aqua complexes due to the formation of hydrogen bonding between the cucurbituril CO groups and aqua ligands. Compound I has a chain structure, while the structure of compound II is layered. Modes of cucurbituril coordination, depending on the size and charge of the metal cation, are discussed.     

Halide‐Anion Water Clusters in Cucurbit[6]uril Supramolecular Systems

Three types of dihalide water clusters [X₂(H₂O)₈]^2? (X=Cl, Br) and [I₂(H₂O)₁₀]^2? have been observed in cucurbit[6]uril supramolecular systems with same guest. According to the single crystal data and the quantitative theory computation, with the increase of electronegativity of halide ions, dihalide water clusters become more stable. A further comparison of three kinds of guests with different molecule length but the same anions, [p‐phenylenediamine salt, hexamethylenediamine salt and N,N′‐hexamethylenebis(pyrazinylbromide)], gives the result that the dihalide water clusters collapse from 2D to 1D with the increase of the lengths.     

Effects of the number and placement of positive charges on viologen–cucurbit[n]uril interactions

Recent developments in the synthesis and applications of the cucurbit[n]uril family of synthetic hosts has led to an increasing interest in the detailed studies of their interactions with a wide variety of guests. This paper describes a quantitative study of the effects of the number and placement of positive charges on the binding of viologen guests to cucurbit[7]uril and cucurbit[8]uril. A series of viologen derivatives with one to four charges was characterised by isothermal titration calorimetry, ¹H NMR spectroscopy and mass spectrometry to determine the stoichiometry, affinity and mode of binding. These data show that stoichiometry can be controlled by the placement of charge, and that affinity can be increased by the addition of positive charges. This study should serve as a guide for the design of supramolecular structures built from viologens and cucurbit[n]urils.

     

New supramolecular adducts of chloroaquacomplexes [M3(μ3-S)S3?xSexCly(H2O)9?y](4?y)+ (M = Mo, W) with cucurbit[6]uril

New supramolecular adducts of cucurbit[6]uril with triangular cluster chloroaquacomplexes of Mo and W with mixed sulfido-selenido bridging ligands, {[W₃S₃Se(H₂O)₇Cl₂]₂(C₃₆H₃₆N₂₄O₁₂)}Cl₂·15H₂O (1), {[W₃S_1.5Se_2.5Cl_1.5(H₂O)_7.5]₂(C₃₆H₃₆N₂₄O₁₂)}Cl₅·18.5H₂O (2), and {[Mo₃SSe₃(H₂O)_7.5Cl_1.5]₂× (C₃₆H₃₆N₂₄O₁₂)}C_l5·11H₂O (3) are obtained treating the mixture of products in Mo-S-Se-Br and W-S-Se-Br systems, isolated, and structurally characterized. In all compounds, the supramolecular structure is based on hydrogen bonded associates of cucurbit[6]uril molecule with two cluster cations.     

Formation of aqua and tetraammine Cu(II) complexes inside the cavities of cucurbit[6,8]urils: A DFT forecast

Results of DFT calculations of the structure and thermodynamics of formation of aqua and tetraammine Cu(II) complexes inside CB[n] (n = 6,8) are presented in this study. Formation thermodynamics of the complexes in the cavitands was evaluated by taking into account the most probable number of water molecules inside CB[n]. In this methodology, the complexation was first considered as a substitution reaction in which the guest complex displaces partially or completely the water molecules that are located inside the cavity. The water molecules present in the cavitand were shown to play an important role in the fixation of the guest complex inside the cavity due to the hydrogen bonds with the oxygen portals. The hydration of Cu(II) ion inside CB[6] leads to the formation of an inclusion compound with the formula {[Cu(H₂O)₄]²⁺·2H₂O}@CB[6] while in CB[8] {[Cu(H₂O)₆]²⁺·4H₂O}@CB[8] is formed. For the binding of tetraammine Cu(II) complex, CB[8] was determined to be a significantly more suitable “container” than CB[6]. Both a direct embedding of this complex into the CB[8] and another mechanism in which ammonia molecules replace the water molecules in the Cu(II) aqua complex, preexisting in CB[8] were determined to be thermodynamically possible. Both these lead to the formation of the resultant inclusion compound described by the formula {[Cu(NH₃)₄(H₂O)₂]²⁺·4H₂O}@CB[8].     

Investigation of Host–Guest Compounds of Cucurbit[n=5–8]uril with Some Ortho Aminopyridines and Bispyridine

Host–guest complexes of cucurbit[n=5–8]uril and some examples of ortho substituted pyridines or aminopyridines were examined by ¹H NMR spectroscopy. Portal binding of two ortho aminopyridine free bases, by cucurbit[5]uril, was observed in ¹H NMR spectra. Combined cavity and portal binding in cucurbit[6]uril were observed for both the free base 2-aminomethylpyridine, ampy, the HCl salt, ampy·1HCl, and the salt of 2,2′-bispyridine, bpy·1HCl. Two novel complexes were formed with cucurbit[6]uril. The free base ampyas a dual occupant, formed a 2:1 complex, and bpy·1HCl formed a stable asymmetric 1:1 complex. Only portal binding of 2,6-bisaminomethylpyridine and its salts was observed for cucurbit[6]uril. Fast exchange of the free base and pyridineammonium salts was observed for cucurbit[7-8]uril.This revised version was published online in July 2005 with a corrected issue number.