Fe/Fe_2和NO反应的密度泛函理论研究

利用密度泛函理论(Density Functional Theory)中的B3LYP方法在6-311+G(d,p)的计算水平上研究了Fe/Fe_2与NO反应的相关微观机理.全参数优化了Fe+NO和Fe_2+NO反应体系在不同重态反应势能面上各驻点的几何结构,并用频率分析法以及内禀反应坐标(Intrinsic Reaction Coordinate)方法对过渡态进行了验证,得到了相对应的反应的微观反应路径.用两态反应分析反应机理,计算结果表明2个体系的优先选择路径均为低自旋态进入和高自旋态离开反应.通过对2个体系反应活化能的比较,Fe_2+NO体系更易进行.     

Comparative study of adsorption and heats of adsorption on planar and particulate polymer surfaces

The adsorption and heats of adsorption of Lewis acidic-basicprobes on planar and particulate surfaces of polyimide/siloxane, 6F photoimagable fluorinated polyimide and 6F polyimide have been studied by flow microcalorimetric, ellipsometric, and contact angle techniques. The heats of adsotption obtained by these techniques are in good agreement. It is noted that the ellipsometric method based on an analysis of adsorption kinetics has advantages over the contact angle technique and may be used for the study of the interface on planar polymer surfaces. The acidic-basic properties of polymers were approximately estimated by using the DragoE andC constants.     

NO adsorption on the stoichiometric and reduced SnO2(110) surface

The adsorption of NO molecules on the perfect and defective (110) surfaces of SnO₂ was studied with first-principles methods at the density-functional theory level. It was found that NO mainly interacts via the nitrogen atom with the bridging oxygens of the stoichiometric surface while the coordinatively unsaturated surface Sn atoms are less reactive. On the oxygen-deficient surface, NO is preferentially adsorbed at the vacancy positions, with the nitrogen atom close to the former surface oxygen site. Regardless of the adsorption site, the unpaired electron is located mainly on the NO molecule and only partly on surface Sn atoms. The results for the SnO₂ surface are compared to literature results on the isostructural TiO₂ rutile (110) surface. Dedicated to Professor Karl Jug on the occasion of his 65th birthday     

金镍六原子团簇吸附CO的密度泛函研究

在UBP86/LAN2DZ水平上计算了金镍二元团簇(AunNi6-n,n=0～6)吸附CO的稳定构型和相关性质.计算结果表明,AunNi6-nCO团簇的最低能量结构是在AunNi6-n团簇最低能量结构或亚稳态结构基础上吸附CO分子而形成.优化结构中C-O键长表明,吸附后的CO没有解离,即CO分子在AunNi6-n团簇表...     

Mechanism of Charging of Au Atoms and Nanoclusters on Li Doped SiO2/Mo(112) Films

We present the results of supercell DFT calculations on the adsorption properties of Au atoms and small clusters (Au_n, n≤5) on a SiO₂/Mo(112) thin film and on the same system modified by doping with Li atoms. The adsorbed Li atoms penetrate into the pores of the silica film and become stabilized at the interface where they donate one electron to the Mo metal. As a consequence, the work function of the Li‐doped SiO₂/Mo(112) film is reduced and results in modified adsorption properties. In fact, while on the undoped SiO₂/Mo(112) film Au interacts only very weakly, on the Li‐doped surface Au atoms and clusters bind with significant bond strengths. The calculations show that this is due to the occurrence of an electron transfer from the SiO₂/Mo(112) interface to the adsorbed gold. The occurrence of the charge transfer is related to the work function of the support but also to the possibility for the silica film to undergo a strong polaronic distortion.     

First-principles characterization of formate and carboxyl adsorption on stoichiometric CeO2(111) and CeO2(110) surfaces

Molecular adsorption of formate and carboxyl on stoichiometric CeO₂(111) and CeO₂(110) surfaces was studied using periodic density functional theory (DFT+U) calculations. Two distinguishable adsorption modes (strong and weak) of formate are identified. The bidentate configuration is more stable than the monodentate adsorption configuration. Both formate and carboxyl bind at the more open CeO₂(110) surface are stronger. The calculated vibrational frequencies of two adsorbed species are consistent with the experimental measurements. Finally, the effects of U parameters on the adsorption of formate and carboxyl over both CeO₂ surfaces were investigated. We found that the geometrical configurations of two adsorbed species are not affected by different U parameters (U = 0, 5, and 7). However, the calculated adsorption energy of carboxyl pronouncedly increases with the U value while the adsorption energy of formate only slightly changes (<0.2 eV). The Bader charge analysis shows the opposite charge transfer occurs for formate and carboxyl adsorption where the adsorbed formate is negatively charge while the adsorbed carboxyl is positively charged. Interestingly, with the increasing U parameter, the amount of charge is also increased.     

Use of cellulose derivatives on gold surfaces for reduced nonspecific adsorption of immunoglobulin G

This study addresses the design of protein-repellent gold surfaces using hydroxyethyl- and ethyl(hydroxyethyl) cellulose (HEC and EHEC) and hydrophobically modified analogues of these polymers (HM-HEC and HM-EHEC). Adsorption behavior of the protein immunoglobulin G (IgG) onto pure gold and gold surfaces coated with cellulose polymers was investigated and described by quartz crystal microbalance with dissipation monitoring (QCM-D), atomic force microscopy (AFM) and contact angle measurements (CAM). Surfaces coated with the hydrophobically modified cellulose derivatives were found to significantly outperform a reference poly(ethylene glycol) (PEG) coating, which in turn prevented 90% of non-specific protein adsorption as compared to adsorption onto pure gold. HEC and EHEC prevented around 30% and 60% of the IgG adsorption observed on pure gold, while HM-HEC and HM-EHEC were both found to completely hinder biofouling when deposited on the gold substrates. Adsorption behavior of IgG has been discussed in terms of polymer surface coverage and roughness of the applied surfaces, together with hydrophobic interactions between protein and gold, and also polymer-protein interactions.     

Theoretical and experimental study of the adsorption of neutral glycine on silica from the gas phase.

The adsorption of neutral glycine onto amorphous silica was investigated both theoretically and experimentally. DFT calculations were performed at the BLYP-631++G** level using a cluster approach. Several possible configurations involving the formation of H bonds between glycine and one, two, or three silanol groups (SiOH) were considered. The most favorable bonding of glycine with one silanol group (45 kJ mol(-1)) occurs through the COOH moiety, thus forming a cycle in which the CO group is an H-bond acceptor whereas the acidic OH group is an H-bond donor. With two or three silanol groups, additional H bonds are formed between the amine moiety and the silanol groups, which leads to an increased adsorption energy (70 and 80 kJ mol(-1) for two and three silanol groups, respectively). Calculated nu(CO), delta(HNH), and delta(HCH) values are sensitive to the adsorption mode. A bathochromic shift of nu(CO) as compared to the nu(CO) of free glycine (calculated in the 1755-1790 cm(-1) range) is found for glycine in interaction with silanol(s). The more H bonds are formed between the COOH moiety and silanol groups, the higher the bathochromic shift. For delta(HNH), no shift is found for glycine adsorbed on one and two silanol groups (where the amine is either not bound or an H-bond donor), whereas a bathochromic shift is calculated with three silanols when the amine moiety is an H-bond acceptor. Experimental FTIR spectra performed at room temperature for glycine adsorbed at 160 degrees C on Aerosil amorphous silica exhibit bands at 1371, 1423, 1630, and 1699 cm(-1). The experimental/calculated frequencies have their best correspondence for glycine adsorbed on two silanol groups. It is important to note that the forms giving the best correspondence to experimental frequencies are the most stable ones.     

H2CO和NO2反应机理的密度泛函理论计算研究

用密度泛函理论方法在UB3LYP/ 6-311++G(d,p)并包含零点能水平上计算得到了H2CO和NO2反应的势能面.在势能面上找到了由H2CO和NO2反应生成HCO和trans-HONO的两条反应通道.直接H迁移反应通道的势垒只有90.54 kJ*mol-1,是主要的反应通道,其TST速率是7.9 cm3*mol-1*s-1,与文献值相符;另一条通道是H2CO异构化为trans-HCOH,然后C位H迁移,最后生成的HOC分子异构化为HCO,这条通道反应势垒高达348.03 kJ*mol-1,是一条次要反应通道.     

配体保护下的Au_(20)团簇吸附和活化CO的理论研究

用密度泛函理论方法计算了CO分子吸附在有机配体聚乙烯吡咯烷酮poly(N-vinyl-2-pyrrolidone)(PVP)保护下的Au20团簇上的稳定构型的结构和性质。配体PVP通过物理吸附主要作用于Au20团簇的顶点位置。与Au20比较,配体的存在有利于CO的吸附和活化,其根本原因是PVP和CO在Au20表面分别作为供电子和吸电子基团产生的协同效应。中性及阴离子Au20团簇对配体和CO的吸附强度不同,前者对PVP吸附作用较强,后者对CO的吸附和活化作用较强。     

Vapour adsorption and contact angles on hydrophobic solid surfaces

To test the effects of vapour adsorption on contact angle measurements, contact angles of high-vapour-pressure liquids and low-vapour-pressure liquids on a hydrophobic solid surface (FC721) were measured by using the axisymmetric drop shape analysis-profile (ADSA-P) technique. Details of the surface preparation and the experiments are presented. By plotting the experimental data in terms of _1v cos vs. _1v, this study shows that the vapour adsorption on a fluorocarbon surface, FC721, is negligible.     

Fibronectin adsorption on titanium surfaces and its effect on osteoblast precursor cell attachment

The objective of this study was to investigate the adsorption of fibronectin on titanium (Ti) surfaces and the effect of pre-adsorbed fibronectin on osteoblast precursor cell attachment in vitro. Two different concentrations of bovine fibronectin were used in this study. Protein adsorption on Ti surfaces was analyzed using the micro bicinchoninic acid (BCA) protein assay. Cell concentration on Ti and fibronectin pre-adsorbed Ti surfaces after 3 h incubation was analyzed using the Vybrant™ cell adhesion assay. Cell morphology on Ti and fibronectin pre-adsorbed Ti surfaces was observed using scanning electron microscopy (SEM). After 180 min incubation, maximum adsorption of bovine fibronectin on Ti surfaces was observed. Fibronectin adsorption on Ti surfaces was observed to be significantly dependent on the initial concentration and the amount of incubation time. In the presence of 1 mg/ml fibronectin pre-adsorbed on Ti surfaces after 15 min, osteoblast precursor cell attachment on Ti surfaces was observed to be enhanced compared with control Ti surfaces, Ti surfaces pre-adsorbed with 1 mg/ml fibronectin for 180 min, and Ti surfaces pre-adsorbed with 0.1 mg/ml fibronectin for 15 and 180 min. No significant difference in cell attachment was observed between control Ti surfaces, Ti surfaces pre-adsorbed with fibronectin for 180 min, and Ti surfaces pre-adsorbed with 0.1 mg/ml fibronectin for 15 and 180 min. In addition, no differences in cell morphology of the attached osteoblast precursor cells on control Ti surfaces and Ti surfaces pre-adsorbed with fibronectin were observed in this study. It was concluded that an optimum concentration of adsorbed fibronectin on Ti surfaces plays an important role in governing cell attachment.     

Albumin adsorption on unmodified and sulfonated polystyrene surfaces, in relation to cell-substratum adhesion

Albumin is commonly applied for blocking the adsorption of other proteins and to prevent the nonspecific adhesion of cells to diverse artificial substrata. Here we address the question of how effective these albumin properties are--by investigating unmodified and sulfonated polystyrene substrata with distinctly different wettabilities. As clearly shown with (125)I-radioisotopic assays, above a concentration of 10-20 μg/mL, the efficiency of bovine serum albumin (BSA) adsorption became markedly higher on the sulfonated surface than on the unmodified one. This study was assisted with the atomic force microscopy. On the unmodified surface, BSA, adsorbed from sufficiently concentrated solutions, formed a monolayer, with occasional intrusions of multilayered patches. Conversely, the arrangement of BSA on the sulfonated surface was chaotic; the height of individual molecules was lower than on the unmodified polystyrene. Importantly, the adhesion study of LNCaP and DU145 cells indicated that both surfaces, subjected to the prior BSA adsorption, did not completely loose their cell-adhesive properties. However, the level of adhesion and the pattern of F-actin organization in adhering cells have shown that cells interacted with unmodified and sulfonated surfaces differently, depending on the arrangement of adsorbed albumin. These results suggest the presence of some bare substratum area accessible for cells after the albumin adsorption to both types of investigated surfaces.     

别嘌醇质子迁移过程的理论研究

别嘌醇(Allopurinol)是次黄嘌呤的位置异构体,是唯一在临床上应用的黄嘌呤氧化酶抑制剂.     

A Theoretical Study of the Interaction of Hydrogen and Oxygen with Palladium or Gold Adsorbed on Pyridine‐Like Nitrogen‐Doped Graphene

The interaction of H₂ and O₂ molecules in the presence of nitrogen‐doped graphene decorated with either a palladium or gold atom was investigated by using density functional theory. It was found that two hydrogen molecules were adsorbed on the palladium atom. The interaction of these adsorbed hydrogen molecules with two oxygen molecules generates two hydrogen peroxide molecules first through a Eley–Rideal mechanism and then through a Langmuir–Hinshelwood mechanism. The barrier energies for this reaction were small; therefore, we expect that this process may occur spontaneously at room temperature. In the case of gold, a single hydrogen molecule is adsorbed and dissociated on the metal atom. The interaction of the dissociated hydrogen molecule on the surface with one oxygen molecule generates a water molecule. The competitive adsorption between oxygen and hydrogen molecules slightly favors oxygen adsorption.     

Density Functional Theory Study on the Adsorption of CN on Transition Metal M（100） （M = Ni,Pd, Pt,Cu, Ag and Au） Surfaces

The adsorption of cyanide on the top site of a series of transition metal M（100） （M = Cu, Ag, Au, Ni, Pd, Pt） surfaces via carbon and nitrogen atoms respectively, with the CN axis perpendicular to the surface, has been studied by means of density functional theory and cluster model. Geometry, adsorption energy and vibrational frequencies have been determined, and the present calculations show that the adsorption of CN through C-end on metal surface is more favorable than that via N-end for the same surface. The vibrational frequencies of CN for C-down configuration on surface are blue-shifted with respect to the free CN, which is contrary to the change of vibrational frequencies when CN is adsorbed by N-down structure. Furthermore, the charge transfer from surface to CN causes the increase of surface work function.     

An Experimental and Theoretical Approach to Investigate the Effect of Chain Length on Aminothiol Adsorption and Assembly on Gold

Despite the numerous studies on the self‐assembled monolayers (SAMs) of alkylthiols on gold, the mechanisms involved, especially the nature and influence of the thiol–gold interface are still under debate. In this work the adsorption of aminothiols on Au(111) surfaces has been studied by using surface IR and X‐ray photoelectron spectroscopy (XPS) as well as by density functional theory (DFT) modeling. Two aminothiols were used, cysteamine (CEA) and mercaptoundecylamine (MUAM), which contain two and eleven carbon atoms, respectively. By combining experimental and theoretical methods, it was possible to draw a molecular picture of the thiol–gold interface. The long‐chain aminothiol produced better ordered SAMs, but, interestingly, the XPS data showed different sulfur binding environments depending on the alkyl chain length; an additional peak at low binding energy was observed upon CEA adsorption, which indicates the presence of sulfur in a different environment. DFT modeling showed that the positions of the sulfur atoms in the SAMs on gold with similar unit cells [(2√3×2√3)R30°] depended on the length of the alkyl chain. Short‐chain alkylthiol SAMs were adsorbed more strongly than long‐chain thiol SAMs and were shown to induce surface reconstruction by extracting atoms from the surface, possibly forming adatom/vacancy combinations that lead to the additional XPS peak. In the case of short alkylthiols, the thiol–gold interface governs the layer, CEA adsorbs strongly, and the mechanism is closer to single‐molecule adsorption than self‐assembly, whereas for long chains, interactions between alkyl chains drive the system to self‐assembly, leading to a higher level of SAM organization and restricting the influence of the sulfur–gold interface.     

Theoretical study of aromaticity in inorganic tetramer clusters

Ground state geometry and electronic structure of M ₄ ^2- cluster (M = B, Al, Ga) have been investigated to evaluate their aromatic properties. The calculations are performed by employing the Density Functional Theory (DFT) method. It is found that all these three clusters adopt square planar configuration. Results reveal that square planar M ₄ ^2- dianion exhibits characteristics of multifold aromaticity with two delocalised π-electrons. In spite of the unstable nature of these dianionic clusters in the gas phase, their interaction with the sodium atoms forms very stable dipyramidal M₄Na₂ complexes while maintaining their square planar structure and aromaticity.