Amperometric Tyrosinase Biosensor Based on Carbon Nanotube–Titania–Nafion Composite Film

A highly sensitive and stable amperometric tyrosinase biosensor has been developed based on multiwalled carbon nanotube (MWCNT) dispersed in mesoporous composite films of sol–gel‐derived titania and perfluorosulfonated ionomer (Nafion). Tyrosinase was immobilized within a thin film of MWCNT–titania–Nafion composite film coated on a glassy carbon electrode. Phenolic compounds were determined by the direct reduction of biocatalytically‐liberated quinone species at ?100 mV versus Ag/AgCl (3 M NaCl) without a mediator. The present tyrosinase biosensor showed good analytical performances in terms of response time, sensitivity, and stability compared to those obtained with other biosensors based on different sol–gel matrices. Due to the large pore size of the MWCNT–titania–Nafion composite, the present biosensor showed remarkably fast response time with less than 3 s. The present biosensor responds linearly to phenol from 1.0×10^?7 M to 5.0×10^?5 M with an excellent sensitivity of 417 mA/M and a detection limit of 9.5×10^?8 M (S/N=3). The enzyme electrode retained 89% of its initial activity after 2 weeks of storage in 50 mM phosphate buffer at pH 7.0.     

Multipolar electrostatics for proteins: Atom–atom electrostatic energies in crambin

Accurate electrostatics necessitates the use of multipole moments centered on nuclei or extra point charges centered away from the nuclei. Here, we follow the former alternative and investigate the convergence behavior of atom‐atom electrostatic interactions in the pilot protein crambin. Amino acids are cut out from a Protein Data Bank structure of crambin, as single amino acids, di, or tripeptides, and are then capped with a peptide bond at each side. The atoms in the amino acids are defined through Quantum Chemical Topology (QCT) as finite volume electron density fragments. Atom‐atom electrostatic energies are computed by means of a multipole expansion with regular spherical harmonics, up to a total interaction rank of L = ?_A+ ?_B + 1 = 10. The minimum internuclear distance in the convergent region of all the 15 possible types of atom‐atom interactions in crambin that were calculated based on single amino acids are close to the values calculated from di and tripeptides. Values obtained at B3LYP/aug‐cc‐pVTZ and MP2/aug‐cc‐pVTZ levels are only slightly larger than those calculated at HF/6‐31G(d,p) level. This convergence behavior is transferable to the well‐known amyloid beta polypeptide Aβ_1–42. Moreover, for a selected central atom, the influence of its neighbors on its multipole moments is investigated, and how far away this influence can be ignored is also determined. Finally, the convergence behavior of AMBER becomes closer to that of QCT with increasing internuclear distance. © 2013 Wiley Periodicals, Inc.     

Amperometric Ethanol Biosensor Based on Carbon Nanotubes Dispersed in Sol–Gel‐Derived Titania–Nafion Composite Film

Composite solution of sol–gel‐derived titania and perfluorosulfonated ionomer (Nafion) was used as a solubilizing agent for multiwalled carbon nanotubes (CNT) as well as an encapsulation matrix for alcohol dehydrogenase (ADH) for the fabrication of a highly sensitive and stable amperometric ethanol biosensor. ADH was immobilized within a thin film of CNT–titania–Nafion composite film coated on a glassy carbon electrode. Because of the mesoporous nature of the CNT–titania–Nafion composite film, the present biosensor exhibited remarkably fast response time within 2 s. The presence of CNT in the composite film increases not only the sensitivity of the ethanol biosensor but also the long‐term stability of the biosensor. The present biosensor responds linearly to ethanol in the wide concentration ranges from 1.0×10^?5 M to 3.0×10^?3 M with the sensitivity of 51.6 mA M^?1cm^?2. The present biosensor showed good long‐term stability with 75% of its activity retained after 4 weeks of storage in 50 mM phosphate buffer at pH 7.0.     

Reactions of N-(N′,N′,N″,N″-tetramethyl)guanidinyl-substituted Phosphines with Organoelement Chlorides involving Phosphorus,Sulfur, and Selenium; Formation of Stable Phosphino-, Thio-, and Selenophosphonium Salts

By reaction of N-(N′,N′,N″,N″-tetramethyl)guanidinyl-substituted phosphines with diorganochlorophosphines, organodichlorophosphines, p-tolylsulfenylchloride and phenylselenylchloride a variety of stable phosphonium chlorides with a P–E (E = P, S, Se) bond were obtained. In one case, performing this reaction in the presence of sodium tetraphenylborate led to the corresponding phosphonium tetraphenylborate. All compounds were characterised by multinuclear NMR and elemental analysis. The selenophosphonium chloride 4 a of the trihydrate was further characterised by a single crystal X-ray analysis. The P–Se bond is very long [193.0(3), 193.3(3) pm in two independent fomula units]. The water molecules and the chloride anions form hydrogen bonded layers.     

Ab initio and density functional studies on the structure and vibrational spectra of 2-hydroxy-1,4-naphthoquinone-1-oxime derivatives

Structure and vibrational frequencies of lawsoneoxime and its C₃-substituted (R=CH₃, NH₂, Cl, NO₂) derivatives in keto and nitrosophenol forms have been obtained employing the Hartree–Fock and density functional methods. Charge distributions in different conformers have been studied using the molecular electrostatic potential topography as a tool. For all these derivatives except for nitrolawsoneoxime the amphi conformer in the keto form is predicted to be of lowest energy, which can partly be attributed to hydrogen bonding through the oximino nitrogen. In the nitro derivative, however, the preference to form a six membered ring owing to O–H–O hydrogen-bonded interactions makes the anti conformer (keto) the stablest. Further one of the nitrosophenol conformers of nitrolawsoneoxime turns out to be very close in energy (0.21 kJ mol^–1 higher) to this anti conformer. The consequences of hydrogen bonding on charge distribution and vibrational spectra are discussed.     

GALAMOST: GPU‐accelerated large‐scale molecular simulation toolkit

GALAMOST [graphics processing unit (GPU)‐accelerated large‐scale molecular simulation toolkit] is a molecular simulation package designed to utilize the computational power of GPUs. Besides the common features of molecular dynamics (MD) packages, it is developed specially for the studies of self‐assembly, phase transition, and other properties of polymeric systems at mesoscopic scale by using some lately developed simulation techniques. To accelerate the simulations, GALAMOST contains a hybrid particle‐field MD technique where particle–particle interactions are replaced by interactions of particles with density fields. Moreover, the numerical potential obtained by bottom‐up coarse‐graining methods can be implemented in simulations with GALAMOST. By combining these force fields and particle‐density coupling method in GALAMOST, the simulations for polymers can be performed with very large system sizes over long simulation time. In addition, GALAMOST encompasses two specific models, that is, a soft anisotropic particle model and a chain‐growth polymerization model, by which the hierarchical self‐assembly of soft anisotropic particles and the problems related to polymerization can be studied, respectively. The optimized algorithms implemented on the GPU, package characteristics, and benchmarks of GALAMOST are reported in detail. © 2013 Wiley Periodicals, Inc.     

The Tetraphenylester of the μ-Imido-Dithiodiphosphoric Acid and its palladium complex — crystal structures

The preparations of [(C₆H₅O)₂PS]₂NH ( SS ) and its Pd complex [Pd{C₆H₅O₂P(S)NP(S)(OC₆H₅) ₂}₂] ( PDSS ) are described. The compounds were characterized by elemental analysis, NMR, and mass spectra and X-ray structure analysis. The structure of SS contains two independent molecules in an asymmetric unit which are joined into dimers via N …? H …? S hydrogen bonds. SS is a Br?nsted acid And reacts with Pd^II to a neutral chelate complex. The structure of PDSS is composed of isolated molecules with Pd atom in the center of symmetry. The Pd atom is coordinated by 4 S atoms in a distorted square-planar arrangement with average distance Pd? S 2.345(6) Å and an angle S? Pd? S 98.29(4)°.     

The ground state of TiC revisited

The ground state of TiC is ³⁺, as predicted by previous configuration interaction calculations. It is shown that there are two low-lying ¹⁺ states and that the density functional theory solution corresponds to the higher of the two ¹⁺ states.Contribution to the Björn Roos Honorary Issue     

Rapid parameterization of small molecules using the force field toolkit

The inability to rapidly generate accurate and robust parameters for novel chemical matter continues to severely limit the application of molecular dynamics simulations to many biological systems of interest, especially in fields such as drug discovery. Although the release of generalized versions of common classical force fields, for example, General Amber Force Field and CHARMM General Force Field, have posited guidelines for parameterization of small molecules, many technical challenges remain that have hampered their wide‐scale extension. The Force Field Toolkit (ffTK), described herein, minimizes common barriers to ligand parameterization through algorithm and method development, automation of tedious and error‐prone tasks, and graphical user interface design. Distributed as a VMD plugin, ffTK facilitates the traversal of a clear and organized workflow resulting in a complete set of CHARMM‐compatible parameters. A variety of tools are provided to generate quantum mechanical target data, setup multidimensional optimization routines, and analyze parameter performance. Parameters developed for a small test set of molecules using ffTK were comparable to existing CGenFF parameters in their ability to reproduce experimentally measured values for pure‐solvent properties (<15% error from experiment) and free energy of solvation (±0.5 kcal/mol from experiment). © 2013 Wiley Periodicals, Inc.     

A theoretical study of radical-only and combined radical/carbocationic mechanisms of arachidonic acid cyclooxygenation by prostaglandin H synthase

Prostaglandin H synthase catalyzes the oxygenation of arachidonic acid into the cyclic endoperoxide, prostaglandin G₂ (PGG₂), and the subsequent reduction of PGG₂ to the corresponding alcohol, prostaglandin H₂ (PGH₂), the precursor of all prostaglandins and thromboxanes. Both radical abstraction by a neighboring tyrosyl radical and combined radical/carbocationic models have been proposed to explain the cyclooxygenase part of this reaction. We have used density functional theory calculations to study the mechanism of the formation of the cyclooxygenated product PGG₂. We found an activation free energy for the initial hydrogen abstraction by the tyrosine radical of 15.6 kcal/mol, and of 14.5 kcal/mol for peroxo bridge formation, in remarkable agreement with the experimental value of 15.0 kcal/mol. Subsequent steps of the radical-based mechanism were found to happen with smaller barriers. A combined radical/carbocation mechanism proceeding through a sigmatropic hydrogen shift was ruled out, owing to its much larger activation free energy of 36.5 kcal/mol. Supplementary material is available in the online version of this article at http://dx.doi.org/10.1007/s00214-003-0476-9. Electronic Supplementary MaterialSupplementary material is available in the online version of this article at Electronic Supplementary Material: Supplementary material is available in the online version of this article at     

First Total Synthesis of Mappain with a Prenylated and Geranylated Stilbene

The first total synthesis of naturally occurring mappain has been achieved by a convergent sequence. The key strategy involved in the synthesis of mappain was a (E)‐stilbene formation by Horner–Wadsworth–Emmons reaction of the corresponding prenylated benzaldehyde with a geranylated benzyl phosphonate.     

Monitoring of herbal mixtures potentially containing synthetic cannabinoids as psychoactive compounds

Herbal mixtures like ‘Spice’ with potentially bioactive ingredients were available in many European countries since 2004 and are still widely used as a substitute for cannabis, although merchandized as ‘herbal incense’. After gaining a high degree of popularity in 2008, big quantities of these drugs were sold. In December 2008, synthetic cannabinoids were identified in the mixtures which were not declared as ingredients: the C₈ homolog of the non‐classical cannabinoid CP‐47,497 (CP‐47,497‐C8) and a cannabimimetic aminoalkylindole called JWH‐018. In February 2009, a few weeks after the German legislation put these compounds and further pharmacologically active homologs of CP‐47,497 under control, another cannabinoid appeared in ‘incense’ products: the aminoalkylindole JWH‐073. In this paper, the results of monitoring of commercially available ‘incense’ products from June 2008 to September 2009 are presented. In this period of time, more than 140 samples of herbal mixtures were analyzed for bioactive ingredients and synthetic cannabimimetic substances in particular. The results show that the composition of many products changed repeatedly over time as a reaction to prohibition and prosecution of resellers. Therefore neither the reseller nor the consumer of these mixtures can predict the actual content of the ‘incense’ products. As long as there is no possibility of generic definitions in the controlled substances legislation, further designer cannabinoids will appear on the market as soon as the next legal step has been taken. This is affirmed by the recent identification of the aminoalkylindoles JWH‐250 and JWH‐398. As further cannabinoids can be expected to occur in the near future, a continuous monitoring of these herbal mixtures is required. The identification of the synthetic opioid O‐desmethyltramadol in a herbal mixture declared to contain ‘kratom’ proves that the concept of selling apparently natural products spiked with potentially dangerous synthetic chemicals/pharmaceuticals is a continuing trend on the market of ‘legal highs’. Copyright © 2010 John Wiley & Sons, Ltd.     

Glycopentosides D – F,Three New Phenolic Glycosides from Glycosmis pentaphylla

A phytochemical investigation of the BuOH‐soluble fraction of the EtOH extract from the stems of Glycosmis pentaphylla resulted in the isolation of three new phenolic glycosides, glycopentosides D–F ( 1 – 3 , resp.). Their structures were determined by using spectroscopic analysis including UV, ¹H‐ and ¹³C‐NMR, DEPT, COSY, ROESY, HMBC, HSQC, HR‐ESI‐MS, and acid hydrolysis.     

Retraction: A New Sesquiterpene from Caragana intermediia and Its Anti‐Pyricularia oryzae P‐2b Activity

The following article from Chinese Journal of Chemistry , 'A New Sesquiterpene from Caragana intermediia and Its Anti–Pyricularia oryzae P–2b Activity' by Zhi–Hua Sun, Chang–Qi Hu, and Jin–Yi Wang, published online on May 15, 2008 in Wiley Online Library, and in print Volume 26 Issue 5, 2008, pages 831–834, has been retracted by agreement between the authors, the journal Editor in Chief, Prof. Guozhen Ji, and Wiley–VCH Verlag GmbH & Co. KGaA. The retraction has been agreed due to overlap between this article and the following article published in Chinese Chemical Letters , 'A new sesquiterpene from Caragana intermediia' by the same authors, Volume 18 Issue 11, 2007, pages 1379–1382.     

LIBEFP: A new parallel implementation of the effective fragment potential method as a portable software library

A new high performance parallel implementation of the general Effective Fragment Potential (EFP) method in a form of a portable software library called libefp is presented. The libefp library was designed to provide developers of various quantum chemistry software packages with an easy way to add EFP functionality to the program of their choice. The general overview of the library is presented and various aspects of interfacing the library with third party quantum chemistry packages are considered. The reference implementation of common methods of computational chemistry such as geometry optimization and molecular dynamics on top of libefp is delivered in the form of efpmd program. Results of molecular dynamics simulation of liquid water using the developed software are described. © 2013 Wiley Periodicals, Inc.     

New Alkaloids from Aconitum vaginatum

Two new amide alkaloids, vaginatunine A and B ( 1 and 2 , resp.), and a new C₁₈‐diterpenoid alkaloid vaginatunine C ( 3 ), together with four known alkaloids, were isolated from the tubers of Aconitum vaginatum. Their structures were determined by means of spectroscopic analyses and comparison of the data with those reported previously.     

Three New Phenol Compounds from Iris dichotoma Pall.

Three new phenolic compounds, irisdichototins D, E, and F ( 1 – 3 , resp.) were isolated from the stems of Iris dichotoma. The structures of the new compounds were elucidated by spectroscopic analyses, including 2D‐NMR techniques.