Kinetics and mechanism of the interaction of adenosine with cis‐diaqua(cis‐1,2‐diaminocyclohexane)platinum(II) perchlorate in aqueous medium

The kinetics of the interaction of adenosine with cis‐[Pt(cis‐dach)(OH₂)₂]²⁺ (dach = diaminocyclohexane) was studied spectrophotometrically as a function of [cis‐[Pt(cis‐dach)(OH₂)₂]²⁺], [adenosine], and temperature at a particular pH (4.0), where the substrate complex exists predominantly as the diaqua species and the ligand adenosine exists as a neutral molecule. The substitution reaction shows two consecutive steps: the first is the ligand‐assisted anation followed by a chelation step. The activation parameters for both the steps have been evaluated using Eyring equation. The low negative value of ΔH^≠₁ (43.1 ± 1.3 kJ mol^?1) and the large negative value of ΔS^≠₁ (?177 ± 4 J K^?1 mol^?1) along with ΔH^≠₂ (47.9 ± 1.8 kJ mol^?1) and ΔS^≠₂ (?181 ± 6 J K^?1 mol^?1) indicate an associative mode of activation for both the aqua ligand substitution processes. The kinetic study was substantiated by infrared and electrospray ionization mass spectroscopic analysis. © 2011 Wiley Peiodicals, Inc. Int J Chem Kinet 43: 219–229, 2011     

Ultra‐fast adenosine 5′‐triphosphate,adenosine 5′‐diphosphate and adenosine 5′‐monophosphate detection by pressure‐assisted capillary electrophoresis UV detection

Herein, we report a new CE method to measure adenine nucleotides adenosine 5′‐triphosphate, adenosine 5′‐diphosphate, and adenosine 5′‐monophosphate in red blood cells. For this purpose, 20 mmol/L sodium acetate buffer at pH 3.80 was used as running electrolyte, and the separation was performed by the simultaneous application of a CE voltage of 25 kV and an overimposed pressure of 0.2 psi from inlet to outlet. A rapid separation of these analytes in less than 1.5 min was obtained with a good reproducibility for intra‐ and inter‐assay (CV<4 and 8%, respectively) and an excellent analytical recovery (from 98.3 to 99%). The applicability of our method was proved by measuring adenine nucleotides in red blood cells.     

Kinetic study of the interaction of three glycine‐containing dipeptides with diaquaethylenediamineplatinum(II) in aqueous medium

The kinetics of the interaction of three glycine‐containing dipeptides, namely, glycine‐L‐leucine (Gly‐Leu), glycine‐L‐isoleucine (Gly‐Ile), and glycine‐valine (Gly‐Val) with [Pt(en)(H₂O)₂](ClO₄)₂ has been studied spectrophotometrically as a function of [substrate complex], [dipeptides] and temperature at a particular pH(4.0), where the substrate complex exists predominantly as the diaqua species and the dipeptides as a zwitterion. The substitution reaction shows two consecutive steps; the first is the ligand‐assisted anation and the second is the chelation step. The activation parameters for both the steps were evaluated using Eyring's equation. The low ΔH₁^≠ and large negative value of ΔS₁^≠ as well as ΔH₂^≠ and ΔS₂^≠ indicate an associative mode of activation for both the aqua ligand substitution processes. © 2011 Wiley Periodicals, Inc. Int J Chem Kinet 43: 498–506, 2011     

Type I Photosensitization of 2′‐deoxyadenosine 5′‐monophosphate (5′‐dAMP) by Biopterin and its Photoproduct Formylpterin

Biopterin (Bip) and its photoproducts 6‐formylpterin (Fop) and 6‐carboxypterin (Cap) accumulate in the skin of patients suffering from vitiligo, a chronic depigmentation disorder where the protection against UV radiation fails because of the lack of melanin. These compounds absorb in the UV‐A inducing a potential photosensitizing action that can cause damage to DNA and other biomolecules. In this work, we have investigated the capability of these pterin derivatives (Pt) to act as photosensitizers under UV‐A irradiation for the degradation of 2′‐deoxyadenosine 5′‐monophosphate (5′‐dAMP) in aqueous solutions, as model DNA target. Steady‐state and time‐resolved experiments were performed and the effect of pH was evaluated. The results showed that photosensitized degradation of 5′‐dAMP was only observed under acidic conditions, and a mechanistic analysis revealed the participation of the triplet excited state of the pterin derivatives (³Pt*) by electron transfer yielding the corresponding pair of radical ions (Pt^?? and 5′‐dAMP^?+), with successive photosensitizer recovery by electron transfer from Pt^?? to O₂. Finally, 5′‐dAMP^?+ participates in subsequent reactions to yield degradation products.     

Kinetic and mechanistic study of the reactions of palladium(II) chlorocomplexes with ethylenediamine in aqueous acid medium

The complexes PdCl₄^2?, PdCl₃(H₂O)^?, and PdCl₃(Ac)^2?, in rapid equilibrium with each other under the adopted experimental conditions, react with ethylenediamine according to the experimental rate law A reaction scheme is proposed involving the reaction of enH⁺ with each of the above species, and the specific rate constants are computed. The activation parameters are given.     

Kinetic study of the complex reaction between copper(II) and 2-(2′-hydroxy-3′-methoxyphenyl)benzothiazole

2-(2′-Hydroxy-3′-methoxyphenyl)benzothiazole reacts with copper(II) in an ethanol/water mixture to form an O,S chelate which exhibits the remarkable property of changing the chelation site above a pH of ca. 5.0, to the O,N site. The detailed kinetics of this reaction in an ethanol/water mixture (3:1) at a temperature of 25 °C was investigated using a stopped-flow spectrophotometric technique employing a wavelength of 400 nm. The initial complex, Cu(O,S), is formed via a fast, reversible second-order complex formation step whereupon the formation of the Cu (O,N) follows first order kinetics. The Cu(O,N) complex is, however, unstable towards internal electron exchange and after the reaction is complete, a black polymeric material very slowly precipitates out of solution. Rate and equilibrium constants for the postulated reactions are presented and discussed.     

Synthesis of (5′S)‐5′‐C‐Alkyl‐2′‐deoxynucleosides

We describe the synthesis of (5′S)‐5′‐C‐butylthymidine ( 5a ), of the (5′S)‐5′‐C‐butyl‐ and the (5′S)‐5′‐C‐isopentyl derivatives 16a and 16b of 2′‐deoxy‐5‐methylcytidine, as well as of the corresponding cyanoethyl phosphoramidites 9a , b and 14a , b , respectively. Starting from thymidin‐5′‐al 1 , the alkyl chain at C(5′) is introduced via Wittig chemistry to selectively yield the (Z)‐olefin derivatives 3a and 3b (Scheme 2). The secondary OH function at C(5′) is then introduced by epoxidation followed by regioselective reduction of the epoxy derivatives 4a and 4b with diisobutylaluminium hydride. In the latter step, a kinetic resolution of the diastereoisomer mixture 4a and 4b occurs, yielding the alkylated nucleoside 2a and 2b , respectively, with (5′S)‐configuration in high diastereoisomer purity (de=94%). The corresponding 2′‐deoxy‐5‐methylcytidine derivatives are obtained from the protected 5′‐alkylated thymidine derivatives 7a and 7b via known base interconversion processes in excellent yields (Scheme 3). Application of the same strategy to the purine nucleoside 2′‐deoxyadenine to obtain 5′‐C‐butyl‐2′‐deoxyadenosine 25 proved to be difficult due to the sensitivity of the purine base to hydride‐based reducing agents (Scheme 4).     

Cobalt(II) and cobalt(III) complexes with 4′‐(4‐cyanophenyl)‐2,2′:6′,2′′‐terpyridine

4′‐Cyanophenyl‐2,2′:6′,2′′‐terpyridine (cptpy) was employed as an N,N′,N′′‐tridentate ligand to synthesize the compounds bis[4′‐(4‐cyanophenyl)‐2,2′:6′,2′′‐terpyridine]cobalt(II) bis(tetrafluoridoborate) nitromethane solvate, [Co^II(C₂₂H₁₄N₄)₂](BF₄)₂·CH₃NO₂, (I), and bis[4′‐(4‐cyanophenyl)‐2,2′:6′,2′′‐terpyridine]cobalt(III) tris(tetrafluoridoborate) nitromethane sesquisolvate, [Co^III(C₂₂H₁₄N₄)₂](BF₄)₃·1.5CH₃NO₂, (II). In both complexes, the cobalt ions occupy a distorted octahedral geometry with two cptpy ligands in a meridional configuration. A greater distortion from octahedral geometry is observed in (I), which indicates a different steric consequence of the constrained ligand bite on the Co^II and Co^III ions. The crystal structure of (I) features an interlocked sheet motif, which differs from the one‐dimensional chain packing style present in (II). The lower dimensionality in (II) can be explained by the disturbance caused by the larger number of anions and solvent molecules involved in the crystal structure of (II). All atoms in (I) are on general positions, and the F atoms of one BF₄⁻ anion are disordered. In (II), one B atom is on an inversion center, necessitating disorder of the four attached F atoms, another B atom is on a twofold axis with ordered F atoms, and the C and N atoms of one nitromethane solvent molecule are on a twofold axis, causing disorder of the methyl H atoms. This relatively uncommon study of analogous Co^II and Co^III complexes provides a better understanding of the effects of different oxidation states on coordination geometry and crystal packing.     

Carbocyclic 5′‐norcytidine (5′‐norcarbodine)

A preparation of (1′R,2′S,3′R,4′S)‐1‐(2′,3′,4′‐trihydroxycyclopent‐1′‐yl)‐lH‐cytosine (5′‐norcarbodine, 3 ) has formally been achieved in 2 steps from (+)‐(1R,4S)‐4‐hydroxy‐2‐cyclopenten‐1‐yl acetate ( 4 ) and cytosine. The L‐like enantiomer of 3 (that is, 6 ) is also reported using the enantiomer of 4 (that is, 7 ). In evalu ating 3 and 6 for antiviral potential against a number of viruses, compound 3 was found to have activity towards Epstein‐Barr virus (EBV).     

N‐Benzoyl‐N′,N′‐dibutylselenourea and its palladium(II) complex

The crystal and molecular structures of N‐benzoyl‐N′,N′‐dibutylselenourea (HL), C₁₆H₂₄N₂OSe, and the corresponding complex bis(N‐benzoyl‐N′,N′‐dibutylselenoureato‐κ²Se,O)palladium(II), [Pd(C₁₆H₂₃N₂OSe)₂], are reported. The selenourea molecule is characterized by intermolecular hydrogen bonds between the selenoamidic H atom and the Se atom of a neighbouring molecule forming a dimer, presumably as a consequence of resonance‐assisted hydrogen bonding or π‐bonding co‐operativity. A second dimeric hydrogen bond is also described. In the palladium complex, the typical square‐planar coordination characteristic of such ligands results in a cis‐[Pd(L‐Se,O)₂] complex.     

Energetic Derivatives of 4, 4′,5, 5′‐Tetranitro‐2, 2′‐bisimidazole (TNBI)

4, 4′,5, 5′‐Tetranitro‐2, 2′‐bisimidazole (TNBI) was synthesized by nitration of bisimidazole (BI) and recrystallized from acetone to form a crystalline acetone adduct. Its ammonium salt ( 1 ) was obtained by the reaction with gaseous ammonia. In order to explore new explosives or propellants several energetic nitrogen‐rich 2:1 salts such as the hydroxylammonium ( 3 ), guanidinium ( 4 ), aminoguanidinium ( 5 ), diaminoguanidinium ( 6 ) and triaminoguanidinium 7 4, 4′,5, 5′‐tetranitro‐2, 2′‐bisimidazolate were prepared by facile metathesis reactions. In addition, methylated 1, 1′‐dimethyl‐4, 4′,5, 5′‐tetranitro‐2, 2′‐bisimidazole (Me₂TNBI, 8 ) was synthesized by the reaction of 2 and dimethyl sulfate. Metal salts of TNBI can also be easily synthesized by using the corresponding metal bases. This was proven by the synthesis of pyrotechnically relevant dipotassium 4, 4′,5, 5′‐tetranitro‐2, 2′‐bisimidazolate ( 2 ), which is a brilliant burning component e.g. in near‐infrared flares. All compounds were characterized by single crystal X‐ray diffraction, NMR and vibrational spectroscopy, elemental analysis and DSC. The sensitivities were determined by BAM methods (drophammer and friction tester). The heats of formation were calculated using CBS‐4M electronic enthalpies and the atomization method. With these values and mostly the X‐ray densities different detonation parameters were computed by the EXPLO5 computer code. Due to the great thermal stability and calculated energetic properties, especially guanidinium salt 4 could be served as a HNS replacement.     

Metallophilic interactions in iodido(2,2′:6′,2′′‐terpyridine)platinum(II) diiodidoaurate(I)

In the title compound, [PtI(C₁₅H₁₁N₃)][AuI₂], the [PtI(terpy)]⁺ cations (terpy is 2,2′:6′,2′′‐terpyridine) stack in pairs about inversion centers through Pt...Pt interactions of 3.5279 (5) Å. The [AuI₂]⁻ anions also exhibit pairwise stacking, with Au...I distances of 3.7713 (5) Å. The [PtI(terpy)]⁺ cations and [AuI₂]⁻ anions aggregate forming infinite arrays of stacked ...({[PtI(terpy)]⁺...[PtI(terpy)]⁺}...{[AuI₂]⁻...[AuI₂]⁻})... units.     

A one‐dimensional heterometallic coordination polymer with a three‐dimensional supramolecular framework: poly[μ2‐aqua‐diaqua(2,2′‐bipyridyl)(μ5‐2‐sulfonatobutanedioato)copper(II)sodium(I)]

The title compound, [CuNa(C₄H₃O₇S)(C₁₀H₈N₂)(H₂O)₃]_n, consists of one Cu^II cation, one Na^I cation, one 2‐sulfonatobutanedioate trianion (SSC³⁻), one 2,2′‐bipyridyl (bpy) ligand and three coordinated water molecules as the building unit. The coordination of the Cu^II cation is composed of two pyridyl N atoms, one water O atom and two carboxylate O atoms in a distorted square‐pyramidal coordination geometry with an axial elongation. The Na^I cation is six‐coordinated by three water molecules and three carboxylate O atoms from three SSC³⁻ ligands in a distorted octahedral geometry. Two SSC³⁻ ligands link two Cu^II cations to form a Cu₂(SSC)₂(bpy)₂ macrocyclic unit lying across an inversion centre, which is further linked by Na^I cations via Na—O bonds to give a one‐dimensional chain. Interchain hydrogen bonds link these chains to form a two‐dimensional layer, which is further extended into a three‐dimensional supramolecular framework through π–π stacking interactions. The thermal stability of the title compound has also been investigated.     

Supramolecular interactions in a copper(II) 4′‐(4‐bromophenyl)‐2,2′:6′,2′′‐terpyridine complex

The title compound, [4′‐(4‐bromophenyl)‐2,2′:6′,2′′‐terpyridine]chlorido(trifluoromethanesulfonato)copper(II), [Cu(CF₃O₃S)Cl(C₂₁H₁₄BrN₃)], is a new copper complex containing a polypyridyl‐based ligand. The Cu^II centre is five‐coordinated in a square‐pyramidal manner by one substituted 2,2′:6′,2′′‐terpyridine ligand, one chloride ligand and a coordinated trifluoromethanesulfonate anion. The Cu—N bond lengths differ by 0.1 Å for the peripheral and central pyridine rings [2.032 (2) (mean) and 1.9345 (15) Å, respectively]. The presence of the trifluoromethanesulfonate anion coordinated to the metal centre allows Br...F halogen–halogen interactions, giving rise to the formation of a dimer about an inversion centre. This work also demonstrates that the rigidity of the ligand allows the formation of other types of nonclassical interactions (C—H...Cl and C—H...O), yielding a three‐dimensional network.     

Di­bromo(N,N′‐di‐2‐pyridyl­amine‐κ2N,N′)­palladium(II)

The palladium center of the title compound, [PdBr₂(C₁₀H₉N₃)], has a slightly distorted square‐planar conformation, with the Pd atom bonded to the two pyridine N atoms of the di‐2‐pyridyl­amine moiety and to two Br atoms. The Pd—Br and Pd—N bond lengths are 2.4168 (6)/2.4201 (5) and 2.036 (3)/2.042 (3) Å, respectively.     

A two‐dimensional coordination polymer: poly[diaqua(μ4‐4,4′‐oxydibenzoato)(μ2‐4,4′‐oxydibenzoato)dilead(II)]

In a new two‐dimensional coordination polymer, [Pb(C₁₄H₈O₅)(H₂O)]_n, the asymmetric unit consists of a Pb^II cation, two halves of two crystallographically distinct fully deprotonated 4,4′‐oxydibenzoate ligands and one aqua ligand. Single‐crystal X‐ray diffraction analysis reveals that the compound is a coordination polymer with the point symbol {5³}₂{5⁴.8²}. In addition, it exhibits a strong fluorescence emission in the solid state at room temperature.     

Two new dimeric cadmium(II) and zinc(II) sulfate complexes with 2,4,6‐tris(2‐pyridyl)‐1,3,5‐triazine and 2,2:6′,2′′‐ter­pyridine

The structures of two new sulfate complexes are reported, namely di‐μ‐sulfato‐κ³O,O′:O′′‐bis{aqua­[2,4,6‐tris(2‐pyridyl)‐1,3,5‐triazine‐κ³N¹,N²,N⁶]­cadmium(II)} tetra­hydrate, [Cd₂(SO₄)₂(C₁₆H₁₂N₆)₂(H₂O)₂]·4H₂O, and di‐μ‐sulfato‐κ²O:O′‐bis­[(2,2′:6′,2′′‐ter­pyridine‐κ³N¹,N^1′,N^1′′)­zinc(II)] dihydrate, [Cd₂(SO₄)₂(C₁₅H₁₁N₃)₂]·2H₂O, the former being the first report of a Cd(tpt) complex [tpt is 2,4,6‐tris(2‐pyridyl)‐1,3,5‐triazine]. Both compounds crystallize in the space group P and form centrosymmetric dimeric structures. In the cadmium complex, the metal center is heptacoordinated in the form of a pentagonal bipyramid, while in the zinc complex, the metal ion is in a fivefold environment, the coordination geometry being intermediate between square pyramidal and trigonal bipyramidal. Packing of the dimers leads to the formation of planar structures strongly linked by hydrogen bonding.     

(2,2′‐Biquinoline‐κ2N,N′)dichloropalladium(II), ‐copper(II) and ‐zinc(II)

In the three title complexes, namely (2,2′‐biquinoline‐κ²N,N′)dichloro­palladium(II), [PdCl₂(C₁₈H₁₂N₂)], (I), and the corresponding copper(II), [CuCl₂(C₁₈H₁₂N₂)], (II), and zinc(II) complexes, [ZnCl₂(C₁₈H₁₂N₂)], (III), each metal atom is four‐coordinate and bonded by two N atoms of a 2,2′‐biquinoline molecule and two Cl atoms. The Pd^II atom has a distorted cis‐square‐planar coordination geometry, whereas the Cu^II and Zn^II atoms both have a distorted tetra­hedral geometry. The dihedral angles between the N—M—N and Cl—M—Cl planes are 14.53 (13), 65.42 (15) and 85.19 (9)° for (I), (II) and (III), respectively. The structure of (II) has twofold imposed symmetry.     

A chloro(2‐pyridinecarboxaldehyde)(2,2′:6′,2′′‐ter­pyridine)­ruthenium(II) complex

The aldehyde moiety in the title complex, chloro(2‐pyridinecarboxaldehyde‐N,O)(2,2′:6′,2′′‐terpyridine‐κ³N)ruthenium(II)–chloro­(2‐pyridine­carboxyl­ic acid‐N,O)(2,2′:6′,2′′‐ter­pyridine‐κ³N)­ruthenium(II)–perchlorate–chloro­form–water (1.8/0.2/2/1/1), [RuCl­(C₆H₅NO)­(C₁₅H₁₁N₃)]_1.8[RuCl­(C₆H₅­NO₂)(C₁₅H₁₁N₃)]_0.2­(ClO₄)₂·­CHCl₃·­H₂O, is a structural model of substrate coordination to a transfer hydrogenation catalyst. The title complex features two independent Ru^II complex cations that display very similar distorted octahedral coordination provided by the three N atoms of the 2,2′:6′,2′′‐ter­pyridine ligand, the N and O atoms of the 2‐pyridine­carbox­aldehyde (pyCHO) ligand and a chloride ligand. One of the cation sites is disordered such that the aldehyde group is replaced by a 20 (1)% contribution from a carboxyl­ic acid group (aldehyde H replaced by carboxyl O—H). Notable dimensions in the non‐disordered complex cation are Ru—N 2.034 (2) Å and Ru—O 2.079 (2) Å to the pyCHO ligand and O—C 1.239 (4) Å for the pyCHO carbonyl group.     

A synchrotron study of (2R,5′S)‐5′‐benzyl‐5‐bromo‐6‐methoxyspiro[indane‐2,2′‐piperazine]‐3′,6′‐dione dimethylformamide solvate

Synchrotron radiation was used to study the structure of the title compound, C₂₀H₁₉BrN₂O₃·C₃H₇NO, which was obtained as fine fragile needle‐shaped crystals by recrystallization from dimethylformamide (DMF), one molecule of which is incorporated per asymmetric unit into the crystal. The compound adopts a compact closed conformation with the orientation of the benzyl group such that the aryl ring is positioned over the piperazinedione ring, resulting in a C_spiro...C_trans—C—C_Ph pseudo‐torsion angle of −3.3 (3)°. The five‐membered ring is present in an expected envelope conformation and the six‐membered piperazinedione ring adopts a less puckered boat‐like conformation. Reciprocal amide‐to‐amide hydrogen bonding between adjacent piperazinedione rings and C—H...O interactions involving DMF molecules propagate in the crystal as a thick ribbon in the a‐axis direction.