Distinguishing yy‐G tautomers by their spectroscopic signatures: A theoretical investigation

A comprehensive theoretical study of electronic transitions of naphtho‐homologated yyG and its five possible tautomers (yyG‐AO7, yyG‐AEc, yyG‐AEt, yyG‐IcO17, and yyG‐ItO17) was performed. The nature of the low‐lying excited states is discussed, and the results are compared to that of y‐bases. Geometry optimizations were performed on the lowest excited singlet ππ* states. Finally, the effects of methanol solution and hydrogen bonding with cytosine on the absorption and emission spectra were examined. The ground state structures were optimized using both the DFT and ab initio HF methods, whereas the excited‐state structures were optimized using the CIS method. The methanol solution was found to red‐shifts both the absorption and emission maxima of the studied bases except for yyG, for which the absorption and emission maxima were blue‐shifted after solvation. In addition, hydrogen bonding with cytosine was found to blue‐shifts both the absorption and emission maxima of yyG, yyG‐AO7, yyG‐IcO17, and yyG‐ItO17. © 2013 Wiley Periodicals, Inc.     

Excited-state properties and environmental effects for protonated schiff bases: a theoretical study.

Complete active space self-consistent field (CASSCF), multireference configuration interaction (MRCI), density functional theory (DFT), time dependent DFT (TDDFT) and the singles and doubles coupled-cluster (CC2) methodologies have been used to study the ground state and excited states of protonated and neutral Schiff bases (PSB and SB) as models for the retinal chromophore. Systems with two to four conjugated double bonds are investigated. Geometry relaxation effects are studied in the excited pipi* state using the aforementioned methods. Taking the MRCI results as reference we find that CASSCF results are quite reliable even though overshooting of geometry changes is observed. TDDFT does not reproduce bond alternation well in the pipi* state. CC2 takes an intermediate position. Environmental effects due to solvent or protein surroundings have been studied in the excited states of the PSBs and SBs using a water molecule and solvated formate as model cases. Particular emphasis is given to the proton transfer process from the PSB to its solvent partner in the excited state. It is found that its feasibility is significantly enhanced in the excited state as compared to the ground state, which means that a proton transfer could be initiated already at an early step in the photodynamics of PSBs.     

The Low‐Lying Excited States of 2,2′‐Bithiophene: A Theoretical Analysis

The low‐energy regions of the singlet→singlet, singlet→triplet, and triplet→triplet electronic spectra of 2,2′‐bithiophene are studied using multiconfigurational second‐order perturbation theory (CASPT2) and extended atomic natural orbitals (ANO) basis sets. The computed vertical, adiabatic, and emission transition energies are in agreement with the available experimental data. The two lowest singlet excited states, 1¹B_u and 2¹B_u, are computed to be degenerate, a novel feature of the system to be borne in mind during the rationalization of its photophysics. As regards the observed high triplet quantum yield of the molecule, it is concluded that the triplet states 2³A_g and 2³B_u, separated about 0.4 eV from the two lowest singlet excited states, can be populated by intersystem crossing from nonplanar singlet states.     

A Time‐Dependent Picture of the Ultrafast Deactivation of keto‐Cytosine Including Three‐State Conical Intersections

Using mixed quantum–classical dynamics, the lowest part of the UV absorption spectrum and the first deactivation steps of keto‐cytosine have been investigated. The spectrum shows several strong peaks, which mainly come from the S₁ and S₂ states, with minor contributions from the S₃. The semiclassical trajectories, launched from these three states, clearly indicate that at least four states are involved in the relaxation of keto‐cytosine to the ground state. Non‐adiabatic transfer between the ππ* and nπ* excited states and deactivation via three‐state conical intersections is observed in the very early stage of the dynamics. In less than 100 fs, a large amount of population is deactivated to the ground state via several mechanisms; some population remains trapped in the S₂ state. The latter two events can be connected to the fs and ps transients observed experimentally.     

Evaluation of the restricted virtual space approximation in the algebraic‐diagrammatic construction scheme for the polarization propagator to speed‐up excited‐state calculations

The applicability and limitations of the restricted virtual space (RVS) approximation within the algebraic‐diagrammatic construction (ADC) scheme for the polarization propagator up to third order is evaluated. In RVS‐ADC, not only the core but also a substantial amount of energetically high‐lying virtual orbitals is restricted in excitation energy calculations of low‐lying excited electronic states. Using octatetraene, indole, and pyridine as representative examples and different standard basis sets of triple‐zeta quality, RVS‐ADC(2) turns out to be highly useful and to have negligible effects on ππ* excited states. However, for nπ* or πσ* states, the RVS approximation is generally less reliable but better at third‐order than second‐order ADC level. In addition, a unified, basis‐set independent, thus normalized virtual orbital threshold (value) is introduced, making the RVS approximation more controllable and a priori applicable. © 2017 Wiley Periodicals, Inc.     

Effects of the Au(I)–Au(I) closed‐shell attraction on the electronic and phosphorescent properties in a series of coordination compounds: A theoretical study

The Au(I)–Au(I) closed‐shell or aurophilic attraction has been the subject of interest in the experimental and theoretical chemistry fields, due to the intriguing properties associated to it. The presence of phosphorescence in “aurophilic” compounds has been addressed to a wide range of applications, but it has not yet been fully understood. A theoretical study on the electronic and phosphorescent properties of the following series of dinuclear gold complexes has been performed: [Au₂(dmpm) (i‐mnt)] ( 1 ), [Au₂(μ‐Me‐TU) (μ‐dppm)] ( 2 ), and [Au₂(μ‐G)(μ‐dmpe)] ( 3 ). Full geometry optimizations at the second‐order Møller–Plesset perturbation theory (MP2) were carried out for each of the species. These calculations made evident that, at the ground‐state geometry, the Au(I) cations allocated at the center of the ring show a short Au–Au distance below the sum of the van der Waals radii, at the range of the aurophilic attraction. An intermolecular Au(I)–Au(I) closed‐shell attraction for a pair of the systems under study is found. This attraction is comparable to that of the hydrogen bonds. The phosphorescent properties experimentally observed for this series were also characterized through ab initio techniques. The obtained results allow to fit reasonably the excitation energies with the experimental data and to identify a correlation between the strength of the Au(I)–Au(I) interaction and the phosphorescent behavior. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Ground and Electronically Excited Singlet‐State Structures of 5‐Fluoroindole Deduced from Rotationally Resolved Electronic Spectroscopy and ab Initio Theory

The structure and electronic properties of the electronic ground state and the lowest excited singlet state (S₁) of 5‐fluoroindole (5FI) were determined by using rotationally resolved spectroscopy of the vibration‐less electronic origin of 5FI. From the parameters of the axis reorientation Hamiltonian, the absolute orientation of the transition dipole moment in the molecular frame was determined and the character of the excited state was identified as L_b.     

Electronic Structure of the Ground and Excited States of β‐Carboline

Coupled‐cluster calculations are used to compute the energy of conversion between the neutral and the zwitterionic forms of β‐carboline. The stability of the different species is discussed in terms of charge separation and aromatic character, which is related to magnetic criteria. By means of a linear response formalism the vertical excitation energies and oscillator strengths of the lowest singlet states of both structures as well as of the cationic species are determined. General agreement of the relative position and intensity of the different peaks with experimental data is achieved, but the overall spectra are slightly displaced because of solvent effects.     

Exploring concerted effects of base pairing and stacking on the excited‐state nature of DNA oligonucleotides by DFT and TD‐DFT studies

We have taken (dA)₅, (dT)₅, and (dA)₅·(dT)₅ as model systems to study concerted effects of base pairing and stacking on excited‐state nature of DNA oligonucleotides using density functional theory (DFT) and time dependent DFT methods. The spectroscopic states are determined to be of a partial A → A charge‐transfer nature in the A·T oligonucleotides. The T → T charge‐transfer transitions produce dark states, which are hidden in the energy region of the steady‐state absorption spectra. This is different from the previous assignment that the T → T charge‐transfer transition is responsible for a shoulder at the red side of the first strong absorption band. The A → T charge‐transfer states were predicted to have relatively high energies in the A·T oligonucleotides. The present calculations predict that the T → A charge‐transfer states are not involved in the spectra and excited‐state dynamics of the A·T oligonucleotides. In addition, the influence of base pairing and stacking on the nature of the ¹nπ* and ¹ππ* states are discussed in detail. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

A combined gas-phase photoelectron spectroscopic and theoretical study of Zeise's anion and its bromine and iodine analogues

Shining light on Zeise: In a study of Zeise's anion, [PtCl(3)(C(2)H(4))](-), and its bromine and iodine analogues, electronic structure information for each species, derived from spectral features, is assigned through calculations at the coupled cluster level of theory. The calculations indicate that the electron binding energies decrease with halogen size and that there is a synergistic η(2) interaction between C(2)H(4) and the PtX(3)(-) anions.     

A CASSCF/CASPT2 insight into excited‐state intramolecular proton transfer of four imidazole derivatives

Excited‐state intramolecular proton transfer (ESIPT) of four imidazole derivatives, 2‐(2′‐hydroxyphenyl)imidazole (HPI), 2‐(2′‐hydroxyphenyl)benzimidazole (HPBI), 2‐(2′‐hydroxyphenyl)‐1H‐phenanthro[9,10‐d]imidazole (HPPI) and 2‐(2′‐hydroxyphenyl)‐1‐phenyl‐1H‐phenanthro[9,10‐d]imidazole (HPPPI), were studied by the sophisticated CASSCF/CASPT2 methodology. The state‐averaged SA‐CASSCF method was used to optimize their geometry structures of S₀ and S₁ electronic states, and the CASPT2 calculations were used for the calibration of all the single‐point energies, including the absorption and emission spectra. A reasonable agreement is found between the theoretical predictions and the available experimental spectral data. The forward ESIPT barriers of four target compounds gradually decrease with the increase of molecular size. On the basis of the present calculations, it is a plausible speculation that the larger the size, the faster is the ESIPT rate, and eventually, HPPPI molecule can undergo a completely barrierless ESIPT to the more stable S₁ keto form. Additionally, taking HPI as a representative example, the radiationless decays connecting the S₀ and S₁/S₀ conical intersection structures were also studied by constructing a linearly interpolated internal coordinate (LIIC) reaction path. The qualitative analysis shows that the LIIC barrier of HPI in the keto form is remarkably lower than that of its enol‐form, indicating that the former has a big advantage over the latter in the nonradiative process. © 2015 Wiley Periodicals, Inc.     

Interaction of angelicin with DNA‐bases (III) DFT and ab initio second‐order Moeller–Plesset study

Angelicin geometry was optimized at MP2/6‐31+G(d,p) level and compared with X‐ray experimental data. The highest π‐electron density was found to be localized on C1? C2 and on C13? C14 as confirmed by the calculated bond length and bond order values. Spectrophptometric properties of angelicin were measured and compared with the computed within the TD‐DFT. Quantum chemical methods were used to study the interaction of angelicin, as a nonlinear furocoumarin, with DNA bases and base pairs. The interactions with DNA bases and base pairs were studied to shade more light on the nature of the intercalation binding forces between angelicin and DNA. Comparing computed electronic properties of angelicin with that of linear psoralens show that the former is a weaker intercalator. The geometry of complexes of angelicin with adenine, thymine, adenine–thymine base pair, cytocine, guanine as well as cytocine–guanine base pair have been optimized in two main orientations, planar and stacked, at the levels of B3LYP/cc‐pVDZ, MP2/6‐31G(d,p) and MP2/cc‐pVDZ. Effect of vertical distance and rotational angle between the stacked molecules on the interaction energy were investigated by the aforementioned methods in gas phase and water media. It was found that ab initio methods which account for the electron correlation effects are the minimum level for studying the noncovalent interactions. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Thin‐Film Properties of DNA and RNA Bases: A Combined Experimental and Theoretical Study

The structures of the DNA and RNA bases cytosine, uracil, and thymine in thin films with a nominal film thickness of about 20 nm are studied by using X‐ray photoemission spectroscopy (XPS) and Fourier‐transform infrared spectroscopy. The molecules are evaporated in situ from powder on a gold foil. The experimental results indicate that cytosine is composed of two energetically close tautomeric forms, whereas uracil and thymine exist in only one tautomeric form. Additionally, quantum chemical calculations are performed to complement the experimental results. The relative energies of the tautomeric forms of cytosine, uracil, and thymine are calculated using Hartree–Fock (HF), density functional theory (DFT), and post‐HF methods. Furthermore, the assignment of the XPS spectra is supported by using simple model considerations employing Koopmans ionization energies and Mulliken net atomic charges.     

Quantum chemical comparison of vertical,adiabatic, and 0‐0 excitation energies: The PYP and GFP chromophores

A number of benchmark studies investigating the performance of quantum chemical methods for calculating vertical excitation energies are today available in the literature. However, less established is the variation between methods in their estimates of the differences between vertical, adiabatic, and 0‐0 excitation energies. To this end, such excitation energies are here calculated for the bright S₁ states of the anionic chromophores of the photoactive yellow protein (PYP) and the green fluorescent protein (GFP) in the gas phase using configuration interaction singles, complete active space self‐consistent field, coupled‐cluster singles and doubles, and time‐dependent density functional theory methods. Although the estimates of the excitation energies vary by more than 1 eV between the methods, the differences between the different types of excitation energies are found to be relatively method‐insensitive, varying by ～0.1 eV only for these particular chromophores. Specifically, the adiabatic energies are uniformly 0.10–0.17 (PYP) and 0.06–0.17 eV (GFP) lower than the vertical energies, and the 0‐0 energies are similarly 0.09–0.14 (PYP) and 0.07–0.17 eV (GFP) lower than the adiabatic energies. © 2012 Wiley Periodicals, Inc.     

Features of the fluorine‐substituted acetaldehydes dynamics in the low‐lying electronic states: Quantum mechanical study of the CHF2CHO molecule lowest excited singlet state

The potential energy surface (PES) for the CHF₂CHO molecule in the excited S₁ state is calculated by the CASSCF method. The features of the 1‐ and 2‐D cross‐sections of PES are considered in comparison with those of the relative molecules. The vibrational frequencies are calculated in harmonic approximation and the vibrational energy levels for the inversion motion of the carbonyl fragment CCH_aO and for the torsion motion of the CHF₂‐top are calculated in anharmonic approximation by the 1‐ and 2‐D variational methods. The calculated data are compared with the experimental ones. The problems of the experimental data interpretation are considered. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

Application of the Perimeter Model to the Assignment of the Electronic Absorption Spectra of Gold(III) Hexaphyrins with [4n+2] and [4n] π‐Electron Systems

Expanded porphyrins : The electronic excited states of two forms of meso‐hexakis(pentafluorophenyl)‐substituted gold(III) hexaphyrin(1.1.1.1.1.1), such as that depicted, have been investigated by density functional calculations and magnetic circular dichroism spectroscopy to assign their low‐energy excited singlet states.

     

Ab initio and DFT study of the electronic structures and spectroscopic properties of pyrene ligands and their cyclometalated complexes

Two ligands 1‐diphenylphosphinopyrene (1‐PyP) ( L ₁ ), 1,6‐bis(diphenylphosphino)‐pyrene (1,6‐PyP) ( L ₂ ) and their cyclometalated complexes [Pt(dppm)(1‐PyP‐H)]⁺ ( 1 ), [Pt₂(dppm)₂(1,6‐PyP‐H₂)]²⁺ (dppm = bis(diphenylphosphino)methane ( 2 ), and [Pd(dppe)(1‐PyP‐H)⁺ (dppe = bis(diphenylphosphino)ethane) ( 3 ) are investigated theoretically to explore their electronic structures and spectroscopic properties. The ground‐ and excited‐state structures are optimized by the density functional theory (DFT) and single‐excitation configuration interaction method, respectively. At the time‐dependent DFT (TDDFT) and B3LYP level, the absorption and emission spectra in solution are obtained. As revealed from the calculations, the lowest‐energy absorptions of 1 and 3 are attributed to the mixing ligand‐to‐metal charge transfer (CT)/intraligand (IL)/ligand‐to‐ligand CT transitions, while that of 2 is attributed to the IL transition. The lowest‐energy phosphorescent emissions of the cyclometalated complexes are attributed to coming from the ³ILCT transitions. With the increase of the spin‐orbit coupling effect, the phosphorescence intensities and the emissions wavelength are correspondingly increased. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Rational Electrostatic Design of Easy‐Axis Magnetic Anisotropy in a ZnII–DyIII–ZnII Single‐Molecule Magnet with a High Energy Barrier

Two novel trinuclear complexes [ZnCl(μ‐L)Ln(μ‐L)ClZn][ZnCl₃(CH₃OH)]?3 CH₃OH (Ln^III=Dy ( 1 ) and Er ( 2 )) have been prepared from the compartmental ligand N,N′‐dimethyl‐N,N′‐bis(2‐hydroxy‐3‐formyl‐5‐bromo‐benzyl)ethylenediamine (H₂L). X‐ray studies reveal that Ln^III ions are coordinated by two [ZnCl(L)]^? units through the phenoxo and aldehyde groups, giving rise to a LnO₈ coordination sphere with square‐antiprism geometry and strong easy‐axis anisotropy of the ground state. Ab initio CASSCF+RASSI calculations carried out on 1 confirm that the ground state is an almost pure M_J=±15/2 Kramers doublet with a marked axial anisotropy, the magnetic moment is roughly collinear with the shortest Dy?O distances. This orientation of the local magnetic moment of the Dy^III ion in 1 is adopted to reduce the electronic repulsion between the oblate electron shape of the M_J=±15/2 Kramers doublet and the phenoxo‐oxygen donor atoms involved in the shortest Dy?O bonds. CASSCF+RASSI calculations also show that the ground and first excited states of the Dy^III ion are separated by 129 cm^?1. As expected for this large energy gap, compound 1 exhibits, in a zero direct‐current field, thermally activated slow relaxation of the magnetization with a large U_eff=140 K. The isostructural Zn–Er–Zn species does not present significant SMM behavior as expected for the prolate electron‐density distribution of the Er^III ion leading to an easy‐plane anisotropy of the ground doublet state.