Theoretical analysis of the thermal effects during in vivo tissue electroporation

Tissue electroporation is a technique that facilitates the introduction of molecules into cells by applying a series of short electric pulses to specific areas of the body. These pulses temporarily increase the permeability of the cell membrane to small drugs and macromolecules. The goal of this paper is to provide information on the thermal effects of these electric pulses for consideration when designing electroporation protocols. The parameters investigated include electrode geometry, blood flow, metabolic heat generation, pulse frequency, and heat dissipation through the electrodes. Basic finite-element models were created in order to gain insight and weigh the importance of each parameter. The results suggest that for plate electrodes, the energy from the pulse may be used to adequately estimate the heating in the tissue. However, for needle electrodes, the geometry, i.e. spacing and diameter, and pulse frequency are critical when determining the thermal distribution in the tissue.     

Theoretical study of specific hydrogen-bonding effects on the bridging P-OR bond strength of phosphate monoester dianions

It has been proposed that the driving force for the initial phosphoryl transfer step of protein tyrosine phosphatases (PTPases) could be activation of the substrate ROPO32- by means of an enforced hydrogen-bonding interaction between an aspartic general acid and the bridging oxygen atom O (Zhang et al. Biochemistry 1995, 34, 16088-16096). The potential catalytic effect of this type of interaction, with regard to P-OR bond cleavage, was investigated computationally through simple model systems in which an efficient intramolecular hydrogen bond can take place between a H-bond donor group and the bridging oxygen atom of the dianionic phosphate. The dielectric effect of the environment (epsilon = 1, 4, and 78) was also explored. The results indicate that this interaction causes significant lengthenings of the scissile P-OR bond in all media but with more extreme effects observed in the low dielectric fields epsilon = 1 and epsilon = 4. It is interesting that, in all cases examined, this interaction actually contributes to stabilize the reactant state while causing its P-OR bond to lengthen. Overall, our results support the idea that this specific hydrogen-bonding situation might well be used by PTPases as an important driving force for promoting phosphoryl transfer reactions through highly dissociative transition states.     

Theoretical modeling of ionization energies of argon clusters: nuclear delocalization effects

Temperature dependence of vertical ionization energies is modeled for small argon clusters (N ≤ 13) using classical parallel-tempering Monte Carlo methods and extended interaction models based on the diatomics-in-molecules approach. Quantum effects at the zero temperature are also discussed in terms of zero-point nuclear vibrations, either at the harmonic approximation level or at the fully anharmonic level using the diffusion Monte Carlo calculations. Both approaches lead to a considerable improvement of the theoretical predictions of argon clusters ionization energies and represent a realistic way of modeling of ionization energies for weakly bound and floppy complexes in general. A thorough comparison with a recent electron-impact experiment [O. Echt et al., J. Chem. Phys. 123, 084313 (2005)] is presented and a novel interpretation of the experimental data is proposed.     

Heat and concentration effects on the small heat shock protein, alpha-crystallin

alpha-Crystallin, a major protein of the mammalian lens, plays a vital role in maintaining the structural stability and transparency of the lens. It performs this function through chaperone-like activity; it has recently been reported that heating alpha-crystallin enhances this ability. The present studies, using both time-resolved and steady-state fluorescence methods, were carried out to compare the conformational changes that result from heating with those that result from increasing protein concentration (up to 70 mg/mL). The relative fluorescence quantum yield from tryptophan (Trp) present in alpha-crystallin increases and then decreases with a concomitant shift of the emission maximum to longer wavelengths when either heating times or protein concentrations are increased. The time profile of fluorescence decay was resolved into three components with lifetimes of ca 0.5, 3 and 7 ns and emission maxima of ca 340, 342 and 350 nm, respectively. With longer heating time or increasing concentrations the contribution from the longer-lived component increases at the expense of the shorter-lived species. These data indicate that with heating or at higher concentrations the internal Trp residues move to the surface of the protein giving a more hydrophobic exterior and possibly explain the reported increased chaperone activity upon heating. As a result of the concentration studies, alpha-crystallin may be more efficient in its chaperone activity in vivo than has been determined by in vitro experiments.     

Effects of pulse strength and pulse duration on in vitro DNA electromobility

Interstitial transport of DNA is a rate-limiting step in electric field-mediated gene delivery in vivo. Interstitial transport of macromolecules, such as plasmid DNA, over a distance of several cell layers, is inefficient due to small diffusion coefficient and inadequate convection. Therefore, we explored electric field as a novel driving force for interstitial transport of plasmid DNA. In this study, agarose gels were used to mimic the interstitium in tissues as they had been well characterized and could be prepared reproducibly. We measured the electrophoretic movements of fluorescently labeled plasmid DNA in agarose gels with three different concentrations (1.0%, 2.0% and 3.0%) subjected to electric pulses at three different field strengths (100, 200 and 400 V/cm) and four different pulse durations (10, 50, 75, 99 ms). We observed that: (1) shorter pulses (10 ms) were not as efficient as longer pulses in facilitating plasmid transport through agarose gels; (2) plasmid electromobility reached a plateau at longer pulse durations; and (3) plasmid electromobility increased with applied electric energy, up to a threshold, in all three gels. These data suggested that both pulse strength and duration needed to be adequately high for efficient plasmid transport through extracellular matrix. We also found that electric field was better than concentration gradient of DNA as a driving force for interstitial transport of plasmid DNA.     

Theoretical and computational modeling of self-oscillating polymer gels

The authors model wave propagation in swollen, chemoresponsive polymer gels that are undergoing the oscillatory Belousov-Zhabotinsky (BZ) reaction. To carry out this study, they first modify the Oregonator model for BZ reactions in simple solutions to include the effect of the polymer on the reaction kinetics. They then describe the gel dynamics through the framework of the two-fluid model. The polymer-solvent interactions that are introduced through the BZ reaction are captured through a coupling term, which is added to the Flory-Huggins model for polymer-solvent mixtures. The resulting theoretical model is then used to develop the gel lattice spring model (gLSM), which is a computationally efficient approach for simulating large-scale, two-dimensional (2D) deformations and chemical reactions within a swollen polymer network. The 2D calculations allow the authors to probe not only volume changes but also changes in the sample's shape. Using the gLSM, they determine the pattern formation and shape changes in 2D rectangular BZ gels that are anchored to a solid wall. They demonstrate that the dynamic patterns depend on whether the gel is expanded or contracted near the wall, and on the sample's dimensions. Finally, they isolate a scenario where the detachment of the gel from the wall leads to macroscopic motion of the entire sample.     

Theoretical study of the effects of substitution,solvation, and structure on the interaction between nitriles and methanol

We report an investigation on intermolecular interactions in R? CN ··· H? OCH₃ (R = H, CH₃, F, Cl, NO₂, OH, SH, SCH₃, CHO, COCH₃, CH₂Cl, CH₂F, CH₂OH, CH₂COOH, CF₃, SCOCH₃, SCF₃, OCHF₂, CH₂CF₃, CH₂OCH₃, and CH₂CH₂OH) complexes using density functional theory. The calculations were conducted on B3LYP/6‐311++G** level of theory for optimization of geometries of complexes and monomers. An improper hydrogen bonding (HB) in the H₃CO? H ··· NC? R complexes was observed in that N atom of the nitriles functions acts as a proton acceptor. Furthermore, quantum theory of “Atoms in Molecules” (AIM) and natural bond orbital (NBO) method were applied to analyze H‐bond interactions in respective complexes. The electron density (ρ) and Laplacian (?²ρ) properties, estimated by atoms in molecules calculations, indicate that H ··· N bond possesses low ρ and positive ?²ρ values, which are in agreement with partially covalent character of the HBs, whereas O? H bonds have negative ?²ρ values. In addition, the weak intermolecular force due to dipole–dipole interaction (U) is also considered for analysis. The examination of HB in these complexes by quantum theory of NBO method fairly supports the ab initio results. Natural population analysis data, the electron density, and Laplacian properties, as well as, the ν(O? H) and γ(O? H) frequencies of complexes, calculated at the B3LYP/6‐311++G** level of theory, are used to evaluate the HB interactions. The calculated geometrical parameters and conformational analysis in water phase solution show that the H₃CO? H ··· NC? R complexes in water are more stable than that in gas phase. The obtained results demonstrated a strong influence of the R substituent on the properties of complexes. Numerous correlations between topological, geometrical, thermodynamic properties, and energetic parameters were also found. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Theoretical modeling of oxygen adsorption on the PbTe(001) surface

For the semiconducting compound PbTe, the initial stages of oxidation, which are important for technology of IR-and thermoelectric devices, have been theoretically studied. The structure, stability, and changes in the electrostatic potentials at the oxidized sites in lead telluride have been calculated in the framework of the cluster approach by the hybrid density functional theory B3LYP method. Different variants of attachment of one to six oxygen atoms to the atoms of the surface and subsurface layers have been considered. The most stable oxidation products have been found. The calculation results are quantitatively consistent with experimental XPS data on chemical shifts.     

Substituent effects on the ketene asymmetric stretching frequency

Asymmetric stretching frequencies of disubstituted ketenes gave a good correlation to substituent constants with the newly parameterized Swain-Lupton equation. Frequencies were predicted for unknown ketenes.     

Theoretical modeling of the chemical synthesis and detonation performance of polynitrocubane derivatives

Theoretical work was performed based on experimental methods described in the literature to simulate and explore feasible routes for the synthesis of energetic octanitrocubane (ONC) and polynitrocubane derivatives. In respective gaseous and liquidous environments, using cubane as the raw material, ONC was successfully synthesized through carboxylation, amination, oxidation and nitration stages, and the related reaction energy barriers were simultaneously acquired. In particular, the polyparametric calibrated gaseous molecular formation enthalpy and the group additivity approach-estimated molecular density were incorporated using the Kamlet-Jacobs equation to evaluate the detonation performance of polynitrocubane derivatives. Some high-energy-density derivatives were found to have superior characteristics as compared with traditional hexagon (RDX) and octagon (HMX) explosives.     

Temperature and ionic strength effects on the chlorosome light-harvesting antenna complex

Chlorosomes, the peripheral light-harvesting antenna complex from green photosynthetic bacteria, are the largest and one of the most efficient light-harvesting antenna complexes found in nature. In contrast to other light-harvesting antennas, chlorosomes are constructed from more than 150,000 self-assembled bacteriochlorophylls (BChls) and contain relatively few proteins that play secondary roles. These unique properties have led to chlorosomes as an attractive candidate for developing biohybrid solar cell devices. In this article, we investigate the temperature and ionic strength effects on the viability of chlorosomes from the photosynthetic green bacterium Chloroflexus aurantiacus using small-angle neutron scattering and dynamic light scattering. Our studies indicate that chlorosomes remain intact up to 75 °C and that salt induces the formation of large aggregates of chlorosomes. No internal structural changes are observed for the aggregates. The salt-induced aggregation, which is a reversible process, is more efficient with divalent metal ions than with monovalent metal ions. Moreover, with treatment at 98 °C for 2 min, the bulk of the chlorosome pigments are undamaged, while the baseplate is destroyed. Chlorosomes without the baseplate remain rodlike in shape and are 30-40% smaller than with the baseplate attached. Further, chlorosomes are stable from pH 5.5 to 11.0. Together, this is the first time such a range of characterization tools have been used for chlorosomes, and this has enabled elucidation of properties that are not only important to understanding their functionality but also may be useful in biohybrid devices for effective light harvesting.     

Influence of electric field on SERS: frequency effects, intensity changes, and susceptible bonds

The fundamental mechanism proposed to explain surface-enhanced Raman scattering (SERS) relies on electromagnetic field enhancement at optical frequencies. In this work, we demonstrate the use of microfabricated, silver nanotextured electrode pairs to study, in situ, the influence of low frequency (5 mHz to 1 kHz) oscillating electric fields on the SERS spectra of thiophenol. This applied electric field is shown to affect SERS peak intensities and influence specific vibrational modes of the analyte. The applied electric field perturbs the polar analyte, thereby altering the scattering cross section. Peaks related to the sulfurous bond which binds the molecule to the silver nanotexture exhibit strong and distinguishable responses to the applied field, due to varying bending and stretching mechanics. Density functional theory simulations are used to qualitatively verify the experimental observations. Our experimental and simulation results demonstrate that the SERS spectral changes relate to electric field induced molecular reorientation, with dependence on applied field strength and frequency. This demonstration creates new opportunities for external dynamic tuning and multivariate control of SERS measurements.     

Effectiveness of tumor electrochemotherapy as a function of electric pulse strength and duration

The aim of this study was to evaluate the effectiveness of electrochemotherapy (ECT) as a function of various combinations of pulse strength and duration. C57Bl mice bearing LLC tumors were injected i.p. with bleomycin (BLM) at doses 5 mg/kg in 0.2 ml of physiological saline. Thirty minutes later, tumors were positioned between plate electrodes and were pulsed with eight-square wave electric pulses with an individual pulse strength of 900, 1100, 1300 or 1500 V/cm and duration of 0.1, 0.25, 0.5 or 1 ms. Effectiveness of ECT was estimated by measuring inhibition of tumor growth and by estimating extent of necrosis in histological slices of the treated tumors. At pulse strength of 900 V/cm and duration of 0.1 ms, electrochemotherapy was ineffective. Noticeable inhibition of tumor growth (threshold of ECT) was obtained when pulse duration at this field strength was increased up to 0.25 ms. Further increase of pulse strength and/or duration resulted in progressive enhancement of antitumor effects. Using tumor doubling time (DT) as a criteria, we showed that the same efficacy of ECT could be achieved using various pairs of values for pulse strength and duration. Largest antitumor efficacy of ECT was obtained at pulse strength of 1500 V/cm and duration of 1 ms. These pulse conditions applied alone neither significantly suppressed tumor growth nor induced noticeable side effects of the surrounding tissues. The results of this study thus suggest that the effectiveness of electrochemotherapy can be enhanced (in comparison to widely accepted conditions of electrochemotherapy--8 pulses of 1300 V/cm, 0.1 ms) if 1500-V/cm, 1-ms electric pulses are used. Our study also implicates that other pulse conditions could be found for this enhanced ECT.     

Moisture uptake in nanocellulose: the effects of relative humidity,temperature and degree of crystallinity

Cellulose - Foams made from cellulose nanomaterials are highly porous and possess excellent mechanical and thermal insulation properties. However, the moisture uptake and hygroscopic properties of...     

Theoretical modeling of mechanisms of phenylacetylene and styrene hydrogenation on the Pd(100) surface

Russian Chemical Bulletin - Various routes of phenylacetylene and styrene hydrogenation on the Pd(100) surface were studied by the DFT-PBE density functional method. The three-layer model of the...     

Volume effects on the nuclear quadrupole resonance transition frequency

A suitable modification of a general thermodynamic procedure to correct experimental data, usually gathered at constant (room) pressure, to that which would be obtained had the volume been kept constant, the normal condition under which the theory is worked out. This allows therefore meaningful comparison of data with theory. This modification is applied to the pressure derivative at constant temperature of the Nuclear Quadrupole Resonance transition frequency as a function of the temperature. It is shown in p-dichlorobenzene and in p-chlorophenol that, by using very reasonable values for the various parameters appearing in the procedure, excellent agreement is found between theory and experimental data.     

Theoretical consideration and modeling of self‐healing polymers

Bioinspired self‐healing polymers have attracted more and more interests. Imparting self‐healing ability to existing polymers or developing new polymeric materials capable of self‐healing is considered to be a solution for improving their long term stability and durability. This article reviews achievements in the field of theoretical researches on re‐establishment of bonding between broken surfaces of self‐healing polymers from microscopic and macroscopic point of view. Chains interaction, mechanical models related to healing procedures and effect of healing, design of novel self‐healing composite systems, and so forth are summarized and analyzed in detail. Both thermoplastics and thermosets are included to offer a comprehensive knowledge framework of the smart function. The scientific challenges are also highlighted, which are related to the production of more advanced self‐healing polymers. © 2011 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2011