Functional monomers and polymers. CXXXI.. Synthesis and interaction studies on polyacrylamide and polymethacrylamide derivatives containing nucleic acid bases

Acrylamide and methacrylamide derivatives of nucleic acid bases were prepared from the corresponding aminoethyl derivatives. Free-radical polymerization of these monomers in water or in organic solvents gave their polymers. From the studies of the polymer complex formation by UV spectroscopy, it was found that extremely stable polymer complexes were formed between complementary polymers containing nucleic acid bases.     

Functional Monomers and Polymers Containing Nucleic Acid Bases: Experiments on Template Polymerization

In order to see how the specific base-base interactions observed between complementary nucleic acid bases can be realized for free-radical polymerization systems, the template polymerization of methacrylate type monomers containing nucleic acid bases in the presence of template polymers containing complementary bases was studied. Stereoregular polymers were chosen as the template polymers. The radical copolymerization of the monomers containing complementary nucleic acid bases was also studied in different solvents.     

Functional monomers and polymers. XXXXI. Template polymerization of methacryloyl-type monomers containing nucleic acid bases

In due consideration of the specific base–base interaction that exists between nucleic acid molecules, the free radical polymerization of N-β-methacryloyloxyethyl derivatives of adenine, thymine, and theophylline initiated by azobisisobutyronitrile (AIBN) was studied in the presence of N-β-methacryloyloxyethyl-type polymers which have complementary nucleic acid bases as template polymers. The rate of polymerization of N-β-methacryloyloxyethyladenine was accelerated when poly(N-β-methacryloyloxyethyluracil) or -thymine was present in the polymerization system. The effect of the stereoregularity of the template polymers, as well as polymerization temperature and the sort of solvents used on the rate of polymerization, was studied and discussed in some detail. The results suggest that the interaction between complementary bases plays a role in template polymerization behavior.     

Functional monomers and polymers. XXXXVII. Complex formation of stereoregular methacryloyl-type polymers containing nucleic acid bases

The complex formation between a poly(N-β-methacryloyloxyethyl) derivative of adenine with one of thymine or uracil was studied in dimethyl sulfoxide and ethylene glycol mixture by ultraviolet (UV) spectroscopy. For the polymer pairs containing complementary nucleic acid bases both hypochromicity and hyperchromicity were found. Stereoregularity of the polymers, as well as the conditions for measurement of, for example, solvent, temperature, and time, affected the complex formation. Both inter- and intramolecular interaction of polymers in solution were discussed in some detail.     

Functional monomers and polymers. LXXI. Conformation and interaction studies of poly-L-lysine derivatives with pendant nucleic acid bases

Copolymers of L -lysine and L -lysine derivatives which contained nucleic acid bases substituted on the N^ε position were synthesized by grafting nucleic acid derivatives onto poly-L -lysine. The conformation and interaction of these copolymers in solution were studied by using spectroscopic measurements. They existed in helical conformation at neutral pH values, and the polymer complex formation among them was examined by ultraviolet (UV) measurements in organic solvents. A decrease in the nucleic acid base content of the copolymers resulted in a decrease in helical structures and also in interactions with the polymer-containing complementary bases.     

Polymeric arylsulfonylmethyl isocyanide,a novel polymer reagent

p-Vinylphenylsulfonylmethyl isocyanide (1M) was synthesized starting with sodium p-styrenesulfinate via p-vinylphenylsulfonylmethylformamide (4M). Free-radical polymerization of 1M provided cross-linked insoluble polymers (1), whereas 4M provided soluble polymers, which could be converted to soluble polymer 1. Conversions of carbonyl compounds to nitriles and Schiff bases to 1,5-disubstituted imidazoles with both soluble and cross-linked polymers 1 as reagents proceeded almost as efficiently as with their low molecular weight analog. Reusability of polymer 1 was fairly good.     

Preparation and application of molecularly imprinted polymer for isolation of chicoric acid from Chicorium intybus L. medicinal plant

Molecularly imprinted polymer (MIP) was synthesized and applied for the extraction of chicoric acid from Chicory herb (Chicorium intybus L.). A computational study was developed to find a suitable template to functional monomer molar ratio for MIP preparations. The molar ratio was chosen based on the comparison of the binding energy of the complexes between the template and functional monomers. Based on the computational results, eight different polymers were prepared using chicoric acid as the template. The MIPs were synthesized in a non-covalent approach via thermal free-radical polymerization, using two different polymerization methods, bulk and suspension. Batch rebinding experiments were performed to evaluate the binding properties of the imprinted polymers. The best results were obtained with a MIP prepared using bulk polymerization with 4-vinylpyridine (4-VP) as the functional monomer and ethylene glycol dimethacrylate (EGDMA) as the crosslinker with a molar ratio of 1:4:20. The best MIP showed selective binding ability toward chicoric acid in the presence of the template’s structural analogues, caffeic acid, caftaric acid and chlorogenic acid.     

DyNAs: constitutional dynamic nucleic acid analogues

Dynamic cationic polymers were generated in aqueous media from functionally complementary monomers bearing nucleobase groups. (1)H NMR spectroscopy was used to follow the polycondensation reaction of the nucleobase-appended dihydrazides 1 and 2 with the dialdehydes B and C. The reversibility of these polymers was established by proton NMR spectroscopy through exchange of the dihydrazide 2 with polymer 1 B. The polymers 1 B, 2 B, 1 C, and 2 C represent dynamic biopolymers of nucleic acid type, DyNAs. Electrostatic interaction of these polymers with polyanionic entities, such as polyphosphates, polynucleotides, and polyaspartic acid, was shown to take place. It induces a change in size of the dynamic polymer, as it responds by an increase in degree of polymerization to an increase of the overall anionic charge introduced, that is, to the total electrostatic interaction.     

Graft copolymers of nucleic acid bases on polyethyleneimine: Interaction of the polymers

Interactions of the graft copolymers of nucleic acid bases on polyethyleneimine with polynucleotides were studied. The backbone of the polymer is linear or branched polyethyleneimine. The nucleic acid bases are adenine and thymine. The polynucleotides used were polyadenylic acid (poly-A) and polyuridylic acid (poly-U). Interactions between these polymers were measured by ultraviolet (UV) absorption and the results were compared with the vinyl-type nucleic acid model polymer.     

Functional Monomers and Polymers. XLV. Activation Parameters for Polymerization of N-[btilde]-Methacryloyloxyethyl Type Monomers Containing Nucleic Acid Bases

In order to determine the effect of functional structure of ester groups on the stereoregularity of polymers, polymerization of N-[btilde]-methacryloyloxyethyl type monomers containing nucleic acid bases was made by using a free-radical initiator. From the NMR spectrometric determination of the stereoregularity of the polymers obtained, it was found that for polymerization of the monomer with adenine as the side group in dimethyl sulfoxide solution, syndiotactic placement appears to be favored by the additional enthalpy of activation required for isotactic placement.     

Adsorption isotherms of a molecular imprinted polymer prepared in the presence of a polymerisable template: Indirect evidence of the formation of template clusters in the binding site

The current opinion about molecular imprinted polymers (MIPs) is that their molecular recognition properties are due to the presence of nanocavities formed during a polymerization process developed in the presence of a template molecule. According to this principle, the shape of these nanocavities is complementary to that of the template and non-covalent interactions are established between the binding site and a single template molecule. Nevertheless, there are some experimental indications that the real molecular recognition mechanism involves clusters of template molecules being packed into the binding site. Recently, it has been proposed that template molecules covalently linked to the binding site can act as nucleation points, enhancing the formation of these molecular clusters.We have tested this hypothesis by studying the adsorption isotherms of polymers prepared by imprinting them with 2,4,5-trichlorophenoxyacetic acid (2,4,5-T). Three different polymers were considered: P0, prepared without the template, P1, whose template was represented by 2,4,5-T molecules, and P2, whose template was 1/3 constituted by the polymerisable 2-(2,4,5-trichlorophenoxyacetoxy)-ethylmethacrylate (2,4,5-TEMA) and 2/3 by 2,4,5-T. The polymers were prepared by thermoinduced polymerization of template mixtures, 4-vinylpyridine and ethylene dimethacrylate. The crushed polymers were packed into HPLC columns and frontal chromatographic runs were performed by eluting the columns with a mobile phase containing variable amounts of 2,4,5-T.The experimental adsorption isotherms were fitted by using several isotherm models, and the Freundlich-Langmuir model was found to give the best fitting in terms of F-test. All the models considered showed a significant difference between the affinity constant values measured for the polymer P1 and P2, with a higher value for the polymer P2 (for Freundlich-Langmuir model: polymer P1, k=(2.00±0.43)×10⁴ M⁻¹; polymer P2, k=(1.93±0.0535)×10⁵ M⁻¹; ratio P2/P1, 9.65±2.09). Such experimental results support the hypothesis that a polymer prepared with a limited amount of template covalently attached to the binding site shows an increased affinity for the template itself.     

Water soluble nucleic acid analogs: Preparation and properties

In order to prepare water soluble natural and synthetic polymers, which contain nucleic acid base units as the functional side groups, a different sort of polymers, such as poly(ethyleneimine), poly(amino acids) and so on were used as the base materials. The properties of the polymers derived, in particular the specific interaction between nucleic acid base containing complementary polymers was studied in detail. Introduction of the base units onto hyaluronic acid was also carried out. Applicabilities of these polymers obtained, for example as the controlled release system by using reversible photodimerization reaction of thymine bases were also shown.     

Preparation and (13C)NMR spectroscopy of stereoregular poly(methacrylic acid)

Several procedures for synthesis of stereoregular poly(methacrylic acid) have been examined and the polymer characterized by (¹³C)NMR. Using d⁶ DMSO as solvent for spectroscopy gives better spectra than those previously obtained using aqueous solutions and stereochemical splittings can be resolved in the methyl signals. Free-radical polymerization in toluene solution is a Bernouilli process giving mainly heterotactic/syndiotactic polymer. Polymers produced with free-radical initiation in aqueous solution have a higher, and pH dependent, content of syndiotactic triads. A previously described procedure for producing regular polymers by hydrolysis of poly(trimethylsilyl methacrylate) requires modification to produce isotactic contents of above 90% and does not give truly syndiotactic polymer. In contrast, polymerization with γ-radiation can produce polymers with close to 90% of syndiotactic triads.     

光聚合整体式咖啡因印迹毛细管柱的制备及分离性能

分子印迹技术作为一种制备对目标分子具有专一识别能力的功能高分子的方法 ,近年来在化学化工、生物化学与生物技术的许多领域中得到广泛应用 [1～ 4 ] .分子印迹技术与微分离方法 (包括微柱液相色谱、毛细管电泳、毛细管电色谱和芯片分离等 )结合已引起人们极大的兴趣和关注[5,6] .毛细管柱是毛细管电色谱和微柱液相色谱的关键部件 ,目前普遍使用的是烷基键合硅胶微粒的填充柱 ,存在制备时须烧塞和填充两大困难 ,以及使用时易产生气泡和易折断等缺点 .将含被识别分子 (印迹分子 )、交联剂、溶剂、功能单体和引发剂的混合液注入毛细管 ,经光…     

Isolation of sinapic acid from broccoli using molecularly imprinted polymers

A molecularly imprinted polymer was synthesized for the purpose of sinapic acid isolation from Egyptian nutraceutical Botrytis italica, L. (broccoli) due to its prominent medicinal and wide pharmacological activities. A computational study was first developed to determine the optimal template to functional monomer molar ratio. Based on the computational results, five polymers were synthesized using a bulk polymerization method with sinapic acid as the template molecule. Evaluation of the synthesized polymers binding performance was carried out using batch rebinding assay, which revealed that the molecularly imprinted polymer of molar ratio (1:4:20), template to functional monomer (4‐vinyl pyridine) to crosslinker (ethylene glycol dimethacrylate) was of optimum performance, thus, this polymer was applied for sinapic acid isolation from closely related analogues. This represents a more practical approach to isolate sinapic acid from different natural extracts selectively.     

Radical polymerization of methyl methacrylate in the presence of isotactic poly(methyl methacrylate). VIII. Influence of template concentration

The influence of template concentration on the radical polymerization of methyl methacrylate along isotactic poly(methyl methacrylate) template was studied. The polymerizations were carried out on three template polymers with different molar masses in dimethylformamide at ?5°C. The initial polymerization rate increased linearly with template concentration until the distribution of template chain segments became homogeneous. At that critical concentration a strong increase in the polymerization rate was observed, whereas still higher template concentrations had only a slight effect on the polymerization rate. The polymerizations were stopped when the weight ratio of formed polymer and template was equal to one. The viscometrically determined molar mass of the formed polymers showed a remarkable behavior in the low template concentration region. It was obviously related to the molar mass of the template polymer and was lower than the molar mass found for blank polymerization. This decrease in molar mass was most pronounced in the case of the lowest template molar mass. It is suggested that nondegradative chain transfer occurring near a template chain end is responsible for this decrease. An increase in the molar mass occurred at the critical concentration, similarly to the change of polymerization rate. However, at still higher template concentrations, where template coils started to overlap each other, the molar mass of the formed polymers increased further. The growing chains could leap from one template chain to another and attain a greater chain length than the blank polymerizate.     

Enzymatic Synthesis of Sequence‐Defined Synthetic Nucleic Acid Polymers with Diverse Functional Groups

The development and in‐depth analysis of T4 DNA ligase‐catalyzed DNA templated oligonucleotide polymerization toward the generation of diversely functionalized nucleic acid polymers is described. The NNNNT codon set enables low codon bias, high fidelity, and high efficiency for the polymerization of ANNNN libraries comprising various functional groups. The robustness of the method was highlighted in the copolymerization of a 256‐membered ANNNN library comprising 16 sub‐libraries modified with different functional groups. This enabled the generation of diversely functionalized synthetic nucleic acid polymer libraries with 93.8 % fidelity. This process should find ready application in DNA nanotechnology, DNA computing, and in vitro evolution of functional nucleic acid polymers.     

Nonenzymatic synthesis of RNA and DNA oligomers on hexitol nucleic acid templates: the importance of the A structure.

Hexitol nucleic acid (HNA) is an analogue of DNA containing the standard nucleoside bases, but with a phosphorylated 1,5-anhydrohexitol backbone. HNA oligomers form duplexes having the nucleic acid A structure with complementary DNA or RNA oligomers. The HNA decacytidylate oligomer is an efficient template for the oligomerization of the 5'-phosphoroimidazolides of guanosine or deoxyguanosine. Comparison of the oligomerization efficiencies on HNA, RNA, and DNA decacytidylate templates under various conditions suggests strongly that only nucleic acid double helices with the A structure support efficient template-directed synthesis when 5'-phosphoroimidazolides of nucleosides are used as substrates.     

Efficient Separation of Hydrophobic Molecules by Molecularly Imprinted Cyclodextrin Polymers

Cyclodextrins were cross-linked with toluene 2,4-diisocyanate in dimethyl sufoxide in the presence of hydrophobic biomolecules as templates, and the imprinted polymers were applied to the stationary phases of high performance liquid chromatography. Molecular imprinting efficiently promoted the binding-affinity and substrate-selectivity towards the template molecule, compared with the control polymers prepared in their absence. When cholesterol (template molecule) was complexed with cyclodextrins prior to the polymerization, for example, the imprinted polymer retained cholesterol more strongly than other steroids. Upon the polymerization without a template molecule, the binding towards steroids was much weaker. Besides steroids, imprinting was effective for various hydrophobic and rigid template molecules. Since binding of the guest molecule was based on inclusion complex formation with cyclodextrins, separation could be achieved in the solvents containing water. These polymeric receptors are also applicable to selective recognition of biologically important molecules or removal of toxic molecules from aqueous media. Thus, imprinting of cyclodextrins is useful for the preparation of synthetic tailor-made receptors for various kinds of hydrophobic guest molecules.     

Functional monomers and polymers. LXIII. A study on the polymer–polymer interaction between nucleic acid base-substituted poly-L-lysines

A study of polymer-polymer interaction was made on several poly-L -lysines that contained pendant nucleic acid bases substituted on the N′ position. Conformation and interaction of these polypeptides were studied in solution by spectroscopic measurement. The results obtained suggest that the high-molecular-weight polymers form polymer complexes in a helical conformation by specific adenine-thymine base pairing. On the other hand, no interaction could be observed for the low-molecular-weight polymers, which existed in a random coil structure.