The influence of (5′R) and (5′S)-5′,8-cyclo-2′-deoxyadenosine for the electronic properties of nucleosides pairs. The theoretical quantum mechanics studies

Oxidatively generated damage to DNA frequently appears in the human genome as the effect of aerobic metabolism or as the result of exposure to exogenous oxidizing agents such as ionization radiation. In this paper, for the first time, the electronic properties of nucleoside pairs containing 5′,8-cyclo-2′-deoxyadenosine (cdA) in their 5′R and 5′S diastereomeric forms (cdA(R)::T and cdA(S)::T) as the simplest model of ds-DNA have been discussed. The following values of the selected electronic parameters, measured in eV, were found for cdA(R)::T, cdA(S)::T, and dA::T, respectively, adiabatic/vertical electron affinity: 0.39/0.24, 0.35/0.18, 0.33/0.21; and adiabatic/vertical ionization potential: 7.27/7.50, 7.7.25/7.49, 7.03/7.27. Moreover, based on the results of the relaxation energy, the presence of cdA(S)::T should provide the highest barrier for electron transfer in ds-DNA. Analyses of hydrogen bond length deviations reveal that the formation of cationic forms results in higher elongation than that of anionic forms. Moreover, during the electron attachment or detachment for the investigated cdA(R)::T, cdA(S)::T, and dA::T nucleoside pairs, the same scheme of changes in hydrogen bond length was noted.      

Orthoamides and Iminium Salts LXXII: N,N,N′,N′,N′′,N′′,N′′′,N′′′‐Octamethyl‐(but‐2‐yne)‐bis(amidinium) Tetrafluoroborate: The First Bis‐amidinium Salt of Acetylenedicarboxyclic Acid. A New Superelectrophile?

A method for the preparation of the first acetylenedicarboxamidinium salt from a bis‐orthoamide derivative of acetylenedicarboxyclic acid has been established. The salt reacted with cyclopentadiene and furan at room temperature to give bicyclic [4+2]‐cycloaddition products. The solid compounds were characterized by solution NMR spectroscopy and by single‐crystal X‐ray diffraction. Quantum‐chemical calculations of the isolated N,N,N′,N′,N′′,N′′,N′′′,N′′′‐octamethyl‐acetylene‐bis(carboxamidinium) ion showed very good agreement with the spectroscopic and diffraction data.     

Warum pentose-und nicht hexose-nucleinsäuren? Teil III. Oligo(2′,3′-dideoxy-β-D-glucopyranosyl) nucleotide (‘homo-DNS’): Paarungesigenschaften

Why Pentose-And Not Hexose-Nucleic Acids? Part III. Oligo(2′,3′-dideoxy-β-D -glucopyranosyl)nucleotides. (‘Homo-DNA’): Base-Pairing Properties

1 Summary in collaboration with Prof. Dr. C. E. Wintner, Haverford College, Haverford, PA 19041-1392.

The paper presents results of a comprehensive investigation on the pairing properties of homo-DNA oligonucleotides, the preparation of which has been described in Part II of this series [2]. The investigation was carried out by using established methods described in the literature for the characterization of oligonucleotides in the natural series, such as determination of melting temperatures of oligonucleotide duplexes by temperature-dependent of melting temperatures, determination of pairing stoichiometry by ratio-dependent UV spectroscopy of binary mixtures of pairing partners, temperature-dependent CD spectroscopy, gel electrophoresis under non-denaturing conditions, and – in selected cases – ¹H – and³¹P-NMR spectroscopy. The systematic comparison of the paring properties of homo-DNA oligonucleotides with corresponding DNA nucleotides (up to dodecamers) indicates that homo-DNA is a highly efficient, autonomous, artificial pairing system with a pairing behavior that is in part similar to, but also, in part, strikingly different from, the pairing behavior of DNA. The pairing properties established so far are listed below in a manner that reflects the sequence of subtitles in Chapt.2 of the text; they were determined under the conditions: H²O, 0.15M NaCl, 0.01M Tris-HCl buffer, pH 7, oligonucleotide concentrations in the μM range, 1:1 ratio of single strands in the case of non-selfcompementary sequences.     

α,β,γ,δ,ε,η-Bi2O3电子结构和光学性质的第一性原理研究

基于密度泛函理论的CASTEP模块研究了α, β, γ, δ, ε和η-Bi₂O₃晶型, 计算分析了其几何结构、 能带结构、 电子态密度和光学性质. 结果表明, α, ε和η相均为层状结构, 其中, α和ε相为单层—Bi—O—结构, 而η相为双层—Bi—O—结构; β, γ和δ相为—Bi_m—O_n—交错结构, 其中δ相交错尤为密集, 呈现导体特性. 各晶相的导带均由Bi 6p态构成, 价带由O_2p态起主导作用. 电势电位分析结果表明, 6种晶相价带电位均在H₂O/O₂之下, 具有强氧化能力, 与实验报道的光催化氧化能力大小顺序γ-Bi₂O₃>β-Bi₂O₃>α-Bi₂O₃>δ-Bi₂O₃一致, 而导带还原电位低于H₂/H₂O, 预测纯Bi₂O₃很难具备催化产氢能力. 光学性质分析发现, γ和δ相的起始响应波长较大, 说明其应具备红外激发的性质. 这些结果可为获得偏红外激发和较宽光谱响应的Bi₂O₃材料研究提供理论基础, 为研发和应用Bi₂O₃及其复合物提供重要的指导.     

(+)-(1S,2S,5R)-8-联苯薄荷醇的合成

以(R)-( )-pu legone为起始原料,经1,4-加成,还原两步反应合成了手性辅助试剂( )-(1S,2S,5R)-8-联苯薄荷醇及其差向异构体(-)-(1R,2S,5R)-8-联苯薄荷醇,总产率95%。其结构经1H NMR,13C NMR,IR,MS和X-射线衍射仪表征。     

The Intermolecular S?H⋅⋅⋅Y (Y=S,O) Hydrogen Bond in the H2S Dimer and the H2S–MeOH Complex

The nature of the S? H???S hydrogen‐bonding interaction in the H₂S dimer and its structure has been the focus of several theoretical studies. This is partly due to its structural similarity and close relationship with the well‐studied water dimer and partly because it represents the simplest prototypical example of hydrogen bonding involving a sulfur atom. Although there is some IR data on the H₂S dimer and higher homomers from cold matrix experiments, there are no IR spectroscopic reports on S? H???S hydrogen bonding in the gas phase to‐date. We present experimental evidence using VUV ionization‐detected IR‐predissociation spectroscopy (VUV‐ID‐IRPDS) for this weak hydrogen‐bonding interaction in the H₂S dimer. The proton‐donating S? H bond is found to be red‐shifted by 31 cm^?1. We were also able to observe and assign the symmetric (ν₁) stretch of the acceptor and an unresolved feature owing to the free S? H of the donor and the antisymmetric (ν₃) SH stretch of the acceptor. In addition we show that the heteromolecular H₂S–MeOH complex, for which both S? H???O and O? H???S interactions are possible, is S‐H???O bound.     

Partial Hydrolysis of Poly(2‐ethyl‐2‐oxazoline) and Potential Implications for Biomedical Applications?

The hydrolysis of PEtOx is studied to evaluate the potential toxicity of partially hydrolyzed polymers that might interfere with its increasing popularity for biomedical applications. The hydrolysis of PEtOx is studied in the presence of digestive enzymes (gastric and intestinal) and at 5.8 M hydrochloric acid as a function of temperature (57, 73, 90, and 100 °C). It is found that PEtOx undergoes negligible hydrolysis at 37 °C and that thermal and solution properties are not altered when up to 10% of the polymer backbone is hydrolyzed. Mucosal irritation and cytotoxicity is also absent up to 10% hydrolysis levels. In conclusion, PEtOx will not decompose at physiological conditions, and partial hydrolysis will not limit its biomedical applications.

     

Redox‐Triggered C?C Coupling of Diols and Alkynes: Synthesis of β,γ‐Unsaturated α‐Hydroxyketones and Furans by Ruthenium‐Catalyzed Hydrohydroxyalkylation

Direct ruthenium‐catalyzed C C coupling of alkynes and vicinal diols to form β,γ‐unsaturated ketones occurs with complete levels of regioselectivity and good to complete control over the alkene geometry. Exposure of the reaction products to substoichiometric quantities of p‐toluenesulfonic acid induces cyclodehydration to form tetrasubstituted furans. These alkyne‐diol hydrohydroxyalkylations contribute to a growing body of merged redox‐construction events that bypass the use of premetalated reagents and, hence, stoichiometric quantities of metallic by‐products.     

Crystal Structure of (1R,4R;1S,4S)2-Amino-3-Cyano-1,4-Diphenyl-2-Cyclopentene-1-ol

1INTRODUCTIONIntheearly1970'sthreegroupsofinvestigatorsL,~,'foundthatlow-valenttita-nium,preparedbythereactionofstrongreducingagentswithtitaniumtrichlorideortitaniumtetrachlorideintetrahydrofuran,canabstractoxygenfromketonesoraldehydes,leadingtotheforma-tionofolefins.Theinterestinthereactioninducedbylow--valenttitaniumreagentsisincreasingandalargenumberoffunctionalgroupscanbereduceds4-6).Recent-ly,wefoundthatthetitlecompoundisObtainedbycy-cllzatlonreactionof(3--oxo-1,3-diphenyl)propyl-pro…     

Synthesis of (1′S*,2R*,3R*)- and (1′S*,2R*,3S*)-N-arylsulfonyl-2-(1′-halogenethyl)-3-methylindolines and their selective toxicity against SH-SY5Y cell line

N-tosyl-2- and N-tosyl-4-halogen-substituted derivatives of 2-(1-methylbut-2-en-1-yl)aniline were synthesized and their molecular iodine-mediated cyclization was investigated. The cyclization upon interaction of N-tosyl-6-methyl-2-(1-methylbut-2-en-1-yl)aniline with molecular iodine in methyl tert-butyl ether or acetonitrile was studied, as well as the interaction of this sulfonamide with N-bromosucinimide in dichloromethane. Synthesized (2R*,3R*)- and (2R*,3S*)-N-arylsulfonyl-2-(1-halogenoethyl)-3-methylindoline derivatives showed cytotoxic activity against HEK293 cells, SH-SY5Y, Jurkat, and HepG2 cell lines. The compounds (2R*,3S*)-N-arylsulfonyl-7-bromo-2-(1-halogenoethyl)-3-methylindoline cis- 4a , stereoisomeric (2R*,3R*)-trans- 4h and (2R*,3S*)-N-tosyl-7-chloro-2-(1-halogenoethyl)-3-methylindoline cis- 4h demonstrated selective toxicity against SH-SY5Y cell line (IC₅₀ ≈ 3 ÷ 5 μM), and did not affect HEK293, Jurkat, and HepG2 cells.     

Synthesis of (3S,5R)-cis- and (3S,5S)-trans-3,5-Dimethylvalerolactones and Their Conversion to Biotransformation Products of (S)-5-Ethyl-5-(2′-pentyl)barbituric Acid

(R,S)-5-Ethyl-5-(2′-pentyl)barbituric acid (I)^1,2 is metabolized in vivo to give all four possible optical isomers of 5-ethyl-5-(3′-hydroxy-1′-methylbutyl)barbituric acid (II). ^3,4 From metabolism studies of pure (1′S)- I and (1′3)-I, Palmer and co-workers^4,5 were able to determine the relative amounts of each of the four isomers formed. These studies showed that (1′S)-I gave mainly one enantiomer of (1′S)-II, whereas (1′R)-I gave approximately equal amounts of both (1′R)-II enantiomers.     

Asymmetric Conjugate Addition of Alcohols to (R)-(-)-5-[(1R,2S,5R)-Menthyloxy]-2-(5H)-Furanone

(R)-(-y5-[(IR,2S,5R)-menthyloxy](1)isausefulchiralsynthonreadilypreparedonatWo-stepprocedure-l']FindingsoffuranoneringsexistingascomponentSofsomenaturalproductSI'laswellastheiractivereactivityl']havestimu1atedeXtensiveresearchofitSasymmetricreactionswhichincludeDiels-Alderreactions,l']l,3-dipo1arcycloadditions,['1Michaelauditionsl5]andconjugateedditionsofaminesl']andmercaPtans.g4:,::7f:7':theseadductsledtovariousmultifunctionalhomochiralbuildingblockssuchas2-alkyl-l,4-butanediols,I'l2-aI…     

Photochemical reactions of [(η 5-C5H5)Mn(CO)3] with Ph2P(S)(CH2) n P(S)Ph2 [n=1, dppm(S)2; 2, dppe(S)2; 3, dppp(S)2]

Six new complexes, Mn(CO)( ⁵-C₅H₅){Ph₂P(S)(CH₂) _n P(S)Ph₂}] (1a–3a) [(1a), n=1; (2a), n=2; (3a), n=3] and [Mn₂(CO)₄( ⁵-C₅H₅)₂(cis--Ph₂P(S)(CH₂) _n P(S)Ph₂)] (1b–3b) [(1b), n=1; (2b), n=2; (3b), n=3] have been synthesized by the photochemical reaction of [( ⁵-C₅H₅)Mn(CO)₃] with Ph₂P(S)(CH₂) _n P(S)Ph₂ [n=1, dppm(S)₂; 2, dppe(S)₂; 3, dppp(S)₂]. The complexes have been characterized by elemental analysis, mass spectroscopy, f.t.-i.r. and ³¹P–[¹H]-n.m.r. spectroscopy. The spectroscopic studies reveal that coordination of the ligand iscis-chelate bidentate in [Mn(CO)( ⁵-C₅H₅){Ph₂P(S)(CH₂) _n P(S)Ph₂}] (1a–3a) and cis-bridging bidentate between two metals in [Mn₂(CO)₄( ⁵-C₅H₅)₂(cis--Ph₂P(S)(CH₂) _n P(S)Ph₂)] (1b–3b).     

Note: Helix or No Helix of β‐Peptides Containing β3hAla(αF) Residues?

A remote ⁴J(F,H) coupling (F? C(α)? C(O)? N? H) of up to 4.2 Hz in α‐fluoro amides with antiperiplanar arrangement of the C? F and the C?O bonds (dihedral angle F? C? C?O ca. 180°) confirms that previous NMR determinations, using the XPLOR‐NIH procedure, of the secondary structures of β‐peptides containing β³hAla(αF) and β³hAla(αF₂) residues were correct. In contrast, molecular‐dynamics (MD) simulations, using the GROMOS program with the 45A3 force field, led to an incorrect conclusion about the relative stability of secondary structures of these β‐peptides. The problems encountered in NMR analyses and computations of the structures of backbone‐F‐substituted peptides are briefly discussed.