Are the radical centers in peptide radical cations mobile? The generation, tautomerism, and dissociation of isomeric alpha-carbon-centered triglycine radical cations in the gas phase

The mobility of the radical center in three isomeric triglycine radical cations[G(*)GG](+), [GG(*)G](+), and [GGG(*)](+) has been investigated theoretically via density functional theory (DFT) and experimentally via tandem mass spectrometry. These radical cations were generated by collision-induced dissociations (CIDs) of Cu(II)-containing ternary complexes that contain the tripeptides YGG, GYG, and GGY, respectively (G and Y are the glycine and tyrosine residues, respectively). Dissociative electron transfer within the complexes led to observation of [Y(*)GG](+), [GY(*)G](+), and [GGY(*)](+); CID resulted in cleavage of the tyrosine side chain as p-quinomethide, yielding [G(*)GG](+), [GG(*)G](+), and [GGG(*)](+), respectively. Interconversions between these isomeric triglycine radical cations have relatively high barriers (> or = 44.7 kcal/mol), in support of the thesis that isomerically pure [G(*)GG](+), [GG(*)G](+), and [GGG(*)](+) can be experimentally produced. This is to be contrasted with barriers < 17 kcal/mol that were encountered in the tautomerism of protonated triglycine [Rodriquez C. F. et al. J. Am. Chem. Soc. 2001, 123, 3006-3012]. The CID spectra of [G(*)GG](+), [GG(*)G](+), and [GGG(*)](+) were substantially different, providing experimental proof that initially these ions have distinct structures. DFT calculations showed that direct dissociations are competitive with interconversions followed by dissociation.     

Are analytical standards and reagents really reliable?

Quality assurance is one of the major challenges in analytical chemistry, whatever the scope of application. The quality of analytical standards is very seldom questioned; however, sometimes odd results are obtained, and all the other potential sources of discrepancies are eliminated. So, we investigated the reliability of three analytical standards and reagents implemented for radiochemical and chemical characterizations of nuclear waste. In particular, this work examined the purity of a source of tritiated dodecane, the trueness of a certified concentration value and the purity for a diethylenetriaminepentaacetic acid (DTPA) reagent and the trueness of a certified concentration value for a multi-anion standard used in an interlaboratory comparison exercise. It was shown that the source of tritiated dodecane contains 60 % of tritiated impurities. The trueness of the DTPA concentration certified by the supplier was questioned due to the presence of impurities in the solution. It was proven that the long-term stability of the multi-anion standard was not guaranteed for nitrite. The results clearly demonstrated that, despite the certificates delivered by the suppliers, caution has to be taken toward the reliability of the analytical standards and reagents.     

Can zinc really exist in its oxidation state +III?

Very recently, a thermochemically stable Zn(III) complex has been predicted by Samanta and Jena (J. Am. Chem. Soc. 2012, 134, 8400-8403). In contrast to their conclusions we show here by quantum chemical calculations that (a) Zn(AuF(6))(3) is not a thermochemically feasible compound, and (b) even if it could be made, it would not represent a Zn(III) oxidation state by any valid definition.     

Estimation of the NF bond distance in NF4+ from its general valence force field

The estimate of the bond length in NF₄⁺ from the published general valence force field was revised and a value of 1.31 Å is suggested.     

Are the solvent effects critical in the modeling of polyoxoanions?

DFT calculations were driven for a set of differently charged polyoxoanions in the gas phase and in solution. We have calculated and analyzed their geometries and orbital energies to trace simple rules of behavior regarding the modeling of anions in isolated form. We discuss the quality of the results depending on the molecular charge, q, and the size of the cluster in terms of the number of metal centers, m. When the q/m ratio reaches a value of approximately 0.8, DFT calculations for the isolated anion fail to describe the gap between the band of occupied oxo orbitals and the set of unoccupied orbitals delocalized among the metal atoms. In these cases the incorporation of the stabilizing external fields generated by the solvent through continuum models improves the geometries and orbital energies.     

Are complete metal-organic frameworks really responsible for improving the performance of high-temperature proton exchange membranes?

Constructing continuous proton transfer channels used metal-organic frameworks (MOFs), which can effectively improve proton conductivity of proton exchange membrane, have recently attracted a lot of attentions. MOFs have relatively harsh operating environment in phosphoric acid-doped (PA-doped) high-temperature proton exchange membranes (HTPEMs). However, there are few reports on the stability and state of MOFs in HTPEMs after PA doping. In this work, a series of MOFs (UIO-66, UIO-66-COOH, UIO-66-NH₂, UIO-66-SO₃H, MIL-101(Cr), and MIL-53(Al)) are selected to investigate their stability via simulating the operating environment for the first time. Composite membranes based on the MOFs are prepared to explore the influence of the stability and state of MOFs on HTPEMs properties. These results indicate that proton transfer channels are constructed in two different styles. After soaking in PA of UIO-66, UIO-66-COOH, MIL-101(Cr), and MIL-53(Al) at 160 °C, metal ions leave the ligands and dissolve, while the ligands are kept in the membranes. These ligands can provide proton transport sites in the membranes and help to construct proton transfer channels. UIO-66-NH₂ and UIO-66-SO₃H are dissolved completely in PA, leading to continuous nanopores. The proton transfer channels are constructed using the nanopores. From the results, we can infer that constructing proton transfer channels is an effectively method to improve the membranes performance, but the transmission mechanism needs to be revealed carefully.     

Solvation of radical cations in water--reactive or unreactive solvation?

The solvation and reaction of ethylene radical cation in aqueous solution has been studied with Car-Parrinello molecular dynamics simulations. All ab initio simulations were performed using a system of 56 water and one ethylene molecule. Using a favorable symmetrically solvated radical cation as the starting point of the simulation a fast addition of water (within 90 fs) to the radical cation is observed. The primary addition product is rapidly deprotonated (within 100 fs) to yield the ethanol-2-yl radical. A second simulation was initiated through vertical ionization of neutral hydrated ethylene, representing a significantly less favorable situation for the addition process. No addition of water can be observed in this second simulation over a time span of 1.7 ps. Taken together the two simulations are indicative of a rearrangement of the solvent shell which represents the major part of the overall reaction barrier. Under these circumstances, the reaction rate of an otherwise spontaneous reaction is limited by the intrinsic solvent relaxation time. This interpretation of the reactivity of hydrated radical cations reconciles previously conflicting experimental condensed phase and theoretical gas phase studies.     

One-step Synthesis of Dipyrromethanes in the Presence of Ionic Liquid [Hmim]BF4

Dipyrromethanes were obtained in moderate yields by the condensation of ketone and pyrrole in the presence of ionic liquid [Hmim]BF4 without using any strong acid and other organic solvent.     

Do cancer proteins really interact strongly in the human protein-protein interaction network?

Protein-protein interaction (PPI) network analysis has been widely applied in the investigation of the mechanisms of diseases, especially cancer. Recent studies revealed that cancer proteins tend to interact more strongly than other categories of proteins, even essential proteins, in the human interactome. However, it remains unclear whether this observation was introduced by the bias towards more cancer studies in humans. Here, we examined this important issue by uniquely comparing network characteristics of cancer proteins with three other sets of proteins in four organisms, three of which (fly, worm, and yeast) whose interactomes are essentially not biased towards cancer or other diseases. We confirmed that cancer proteins had stronger connectivity, shorter distance, and larger betweenness centrality than non-cancer disease proteins, essential proteins, and control proteins. Our statistical evaluation indicated that such observations were overall unlikely attributed to random events. Considering the large size and high quality of the PPI data in the four organisms, the conclusion that cancer proteins interact strongly in the PPI networks is reliable and robust. This conclusion suggests that perturbation of cancer proteins might cause major changes of cellular systems and result in abnormal cell function leading to cancer.     

Propargyl cations — powerful ambient temperature dienophiles in the diels-lder reaction

The diphenylpropargyl cation has been shown to be a powerful Diels-Alder dienophile which adds to dienes in high yield at ambient temperatures.     

Is charge reduction in ESI really necessary?

The technique of charge reduction electrospray mass spectrometry (CREMS), which can reduce the charge state complexity produced in electrospray ionization (ESI), is discussed.     

Are MCDF calculations 101% correct in the super-heavy elements range?

We explore QED and many-body effects in super-heavy elements up to Z?=?173 using the multiconfiguration Dirac?CFock method. We study the effect of going beyond the average level approximation on the determination of the ground state of element 140 and compare with the recent work of Pekka Pyykk? on the periodic table for super-heavy elements (Pyykko¨, in Phys Chem Chem Phys, 13:161, 2011). We confirm that QED corrections are of the order of 1% on ionization energies. We show that the atomic number at which the 1s shell dives into the negative energy continuum is 173 and is not affected by the approximation employed to evaluate the electron?Celectron interaction.     

Origin of the synchronicity on the transition structures of polar Diels-Alder reactions. Are these reactions [4 + 2] processes?

The transition structures (TSs) for a series of related Diels-Alder reactions between cyclopentadiene and mono-, di-, tri-, and tetracyanoethylene derivatives have been studied with use of DFT methods at the B3LYP/6-31G computational level. The increase of the electron-withdrawing substitution on ethylene increases the rate of these polar cycloadditions. However, the symmetric arrangement of cis and trans 1,2-di- and tetracyanoethylenes decreases the effectiveness of the substitution, which can be related to the symmetry found at the corresponding TSs. A DFT analysis of the global and local electrophilicity power of these series of cyano ethylenes provides a sound explanation about the nature of these synchronous processes. The present theoretical study is in agreement with the experimental outcomes.     

Ion-chromatographic separation of metal cations in the presence of α-hydroxyisobutyric acid

Separations of metal cations on a column packed with the strongly acidic cation exchanger Separon SGX CX were investigated in the presence of alpha-hydroxyisobutyric acid (HIBA) in the mobile phase. A retention model based on the general theory of side equilibria was elaborated and relations describing dependences of capacity factors of analytes on the compositon of the mobile phase were derived. Effects of HIBA concentration and pH of the mobile phase on the analyte retention were studied in detail. Stability constants of divalent metal cations (Cd(2+), Co(2+), Mn(2+), Ni(2+) and Zn(2+)) with HIBA were calculated from the experimental dependences of the reciprocal values of capacity factors on the ligand concentration.     

Are the stainless steel electrodes inert?

The electrodes used for electroporation, electrofusion, and electrotransfection, as well as in electrochemotherapy should not interact with the object and release electrolysis products. We studied how far the stainless steel electrodes fulfil these requirements. The results showed that in the case of the exponential electric pulses with amplitude of 3 kV cm(-1) and time constant of 0.5 ms, the stainless steel electrodes released ferrous ions to a concentration of several micromoles per liter. We determined experimentally the dependence of the amount of the released ferrous ions on the pulse parameters and on the ionic strength of the medium. It was shown that the released ferrous ions should not be ignored. They could be of importance for the bleomycin electrochemotherapy.     

Are structures with Al-H bonds represented in the photoelectron spectrum of Al3O4H2-?

Photoelectron spectra of Al3O4H2- clusters formed by reactions of Al3O3- with water molecules have been interpreted recently in terms of dissociative absorption products with hydroxide and oxide anions that are coordinated to aluminum cations. Alternative isomers with Al-H bonds have lower energies, but barriers to hydrogen migrations that break O-H bonds and create Al-H bonds are high. Ab initio electron propagator calculations of the vertical electron detachment energies of the anions indicate that the species with hydrides cannot be assigned to the chief features in the photoelectron spectrum. Therefore, the previously studied dissociative absorption products are the structures that are most likely to be probed in the photoelectron spectra.     

Do secondary and tertiary ammonium cations act as structure-directing agents in the formation of layered uranyl selenites?

Two new layered uranyl selenites, [C(4)H(12)N(2)](0.5)[UO(2)(HSeO(3))(SeO(3))] (1) and [C(6)H(14)N(2)](0.5)[UO(2)(HSeO(3))(SeO(3))].0.5H(2)O.0.5CH(3)CO(2)H (2), have been isolated from mild hydrothermal reactions. The preparation of 1 was achieved by reacting UO(2)(C(2)H(3)O(2))(2).2H(2)O with H(2)SeO(4) in the presence of piperazine at 130 degrees C for 2 d. Crystals of 2 were synthesized by reacting UO(2)(C(2)H(3)O(2))(2).2H(2)O, H(2)SeO(4), and 1,4-diazabicyclo[2.2.2]octane at 150 degrees C for 2 d. The structure of 1 consists of UO(2)(2+) cations that are bound by bridging HSeO(3)(-) anions and chelating/bridging SeO(3)(2)(-) anions to yield UO(7) pentagonal bipyramids. The joining of the uranyl moieties by the hydrogen selenite and selenite anions creates two-dimensional 2(infinity) [UO(2)(HSeO(3))(SeO(3))](-) layers that extend in the bc-plane. The stereochemically active lone pair of electrons on the HSeO(3)(-) and SeO(3)(2)(-) anions align along the a-axis making each layer polar. The 2(infinity)[UO(2)(HSeO(3))(SeO(3))](-) layers and piperazinium cations stack in a AA'BAA'B sequence where two layers stack on one another without intervening piperazinium cations. While each 2(infinity)[UO(2)(HSeO(3))(SeO(3))](-) layer is polar, in the AA' stacking, the polarity of the second sheet is reversed with respect to the first, yielding an overall structure that is centrosymmetric. The structure of 2 is constructed from uranyl cations that are bound by three bridging SeO(3)(2)(-) and two bridging HSeO(3)(-) anions to create UO(7) pentagonal bipyramids. The linking of the uranyl cations by the HSeO(3)(-) and SeO(3)(2-) anions creates 2(infinity)[UO(2)(HSeO(3))(SeO(3))](-) layers that extend in the ac-plane. In 1 and 2, the organic ammonium cations form hydrogen bonds with the anionic uranyl selenite layers. Crystallographic data: 1, monoclinic, space group P2(1)/c, a = 10.9378(5) A, b = 8.6903(4) A, c = 9.9913(5) A, beta = 90.3040(8) degrees, Z = 4; 2, orthorhombic, space group Pnma, a = 13.0858(8) A, b = 17.555(1) A, c = 10.5984(7) A, Z = 8.     

Can radical cations of the constituents of nucleic acids be formed in the gas phase using ternary transition metal complexes?

Electrospray ionization (ESI) tandem mass spectrometry (MS/MS) of ternary transition metal complexes of [M(L(3))(N)](2+) (where M = copper(II) or platinum(II); L(3) = diethylenetriamine (dien) or 2,2':6',2'-terpyridine (tpy); N = the nucleobases: adenine, guanine, thymine and cytosine; the nucleosides: 2'deoxyadenosine, 2'deoxyguanosine, 2'deoxythymine, 2'deoxycytidine; the nucleotides: 2'deoxyadenosine 5'-monophosphate, 2'deoxyguanosine 5'-monophosphate, 2'deoxythymine 5'-monophosphate, 2'deoxycytidine 5'-monophosphate) was examined as a means of forming radical cations of the constituents of nucleic acids in the gas phase. In general, sufficient quantities of the ternary complexes [M(L(3))(N)](2+) could be formed for MS/MS studies by subjecting methanolic solutions of mixtures of a metal salt [M(L(3))X(2)] (where M = Cu(II) or Pt(II); L(3) = dien or tpy; X = Cl or NO(3)) and N to ESI. The only exceptions were thymine and its derivatives, which failed to form sufficient abundances of [M(L(3))(N)](2+) ions when: (a) M = Pt(II) and L(3) = dien or tpy; (b) M = Cu(II) and L(3) = dien. In some instances higher oligomeric complexes were formed; e.g., [Pt(tpy)(dG)(n)](2+) (n = 1-13). Each of the ternary complexes [M(L(3))(N)](2+) was mass-selected and then subjected to collision-induced dissociation (CID) in a quadrupole ion trap. The types of fragmentation reactions observed for these complexes depend on the nature of all three components (metal, auxiliary ligand and nucleic acid constituent) and can be classified into: (i) a redox reaction which results in the formation of the radical cation of the nucleic acid constituent, N(+.); (ii) loss of the nucleic acid constituent in its protonated form; and (iii) fragmentation of the nucleic acid constituent. Only the copper complexes yielded radical cations of the nucleic acid constituent, with [Cu(tpy)(N)](2+) being the preferred complex due to suppression, in this case, of the loss of the nucleobase in its protonated form. The yields of the radical cations of the nucleobases from the copper complexes follow the order of their ionization potentials (IPs): G (lowest IP) > A > C > T (highest IP). Sufficient yields of the radical cations of each of the nucleobases allowed their CID reactions (in MS(3) experiments) to be compared to their even-electron counterparts.