Towards chemical analysis of nanostructures in biofilms II: tip-enhanced Raman spectroscopy of alginates

This study examines the feasibility of using tip-enhanced Raman spectroscopy (TERS) for label-free chemical characterization of nanostructures in biological systems. For this purpose, a well-defined model system consisting of calcium alginate fibers is studied. In a companion paper, calcium alginate fibers and their network structures were shown to be a good model for the extracellular polysaccharides of biofilms at the nanoscale. TERS analysis of biological macromolecules, such as alginates, is complicated by heterogeneity in their sequence, molecular weight, and conformations, their small Raman cross-section, and the large number of functional groups, which can chemically interact with the silver surface of the tip and cause significant band shifts. Due to these effects, Raman frequencies in TERS spectra of biopolymers do not necessarily resemble band positions in the normal Raman spectrum of the bulk material, as is the case for less complex samples (e.g., dye molecules) studied so far. Additionally, analyte decomposition due to laser heating can have a significant influence, and carbon contamination signals can sometimes even overwhelm the weak analyte signals. Based on the investigation of alginates, strategies for spectra correction, choice of appropriate reference samples, and data interpretation are presented. With this approach, characteristic frequency ranges and specific marker bands can be found for biological macromolecules that can be employed for their identification in complex environments. Figure TERS spectrum of a calcium alginate fiber bundle     

Tip-enhanced Raman spectroscopy for nanoscale strain characterization

Tip-enhanced Raman spectroscopy (TERS), which utilizes the strong localized optical field generated at the apex of a metallic tip when illuminated, has been shown to successfully probe the vibrational spectrum of today’s and tomorrow’s state-of-the-art silicon and next-generation semiconductor devices, such as quantum dots. Collecting and analyzing the vibrational spectrum not only aids in material identification but also provides insight into strain distributions in semiconductors. Here, the potential of TERS for nanoscale characterization of strain in silicon devices is reviewed. Emphasis will be placed on the key challenges of obtaining spectroscopic images of strain in actual strained silicon devices. Figure Figure Concept of Tip Enhanced Raman Spectroscopy (TERS), which utilizes the strong localized optical field generated at the apex of a metallic tip when illuminated. TERS has been demonstrated to successfully probe the vibrational spectrum of today’s and tomorrow’s state-of-the-art silicon and next generation semiconductor devices     

Detection of bacteria by surface-enhanced Raman spectroscopy

The detection and identification of dilute bacterial samples by surface-enhanced Raman spectroscopy has been explored by mixing aqueous suspensions of bacteria with a suspension of nanocolloidal silver particles. An estimate of the detection limit of E. coli was obtained by varying the concentration of bacteria. By correcting the Raman spectra for the broad librational OH band of water, reproducible spectra were obtained for E. coli concentrations as low as approximately 10³ cfu/mL. To aid in the assignment of Raman bands, spectra for E. coli in D₂O are also reported. Figure Light scattering apparatus used to detect bacteria     

Raman spectroscopy on transition metals

Surface-enhanced Raman spectroscopy (SERS) has developed into one of the most important tools in analytical and surface sciences since its discovery in the mid-1970s. Recent work on the SERS of transition metals concluded that transition metals, other than Cu, Ag, and Au, can also generate surface enhancement as high as 4 orders of magnitude. The present article gives an overview of recent progresses in the field of Raman spectroscopy on transition metals, including experimental, theory, and applications. Experimental considerations of how to optimize the experimental conditions and calculate the surface enhancement factor are discussed first, followed by a very brief introduction of preparation of SERS-active transition metal substrates, including massive transition metal surfaces, aluminum-supported transition metal electrodes, and pure transition metal nanoparticle assembled electrodes. The advantages of using SERS in investigating surface bonding and reaction are illustrated for the adsorption and reaction of benzene on Pt and Rh electrodes. The electromagnetic enhancement, mainly lightning-rod effect, plays an essential role in the SERS of transition metals, and that the charge-transfer effect is also operative in some specific metal–molecule systems. An outlook for the field of Raman spectroscopy of transition metals is given in the last section, including the preparation of well-ordered or well-defined nanostructures, and core-shell nanoparticles for investigating species with extremely weak SERS signals, as well as some new emerging techniques, including tip-enhanced Raman spectroscopy and an in situ measuring technique. Figure Electric-field enhancement of a SERS-active Rh surface decorated with small nanohemispheres     

Characterization of nanoindentation-induced residual stresses in human enamel by Raman microspectroscopy

The objective of this research was to investigate nanoindentation-induced residual stresses in human enamel using Raman microspectroscopy and establish if this approach can be used as a stress meter. Healthy human premolars and sintered hydroxyapatite samples were embedded, cut, and the surfaces were polished finely with a 0.05 μm polishing paste before Berkovich and spherical indentations were made with a force of 100 mN. Spectra were collected using a Renishaw Raman InVia reflex microscope equipped with an air-cooled charge-coupled device (CCD) camera. Sample excitation was achieved using either an argon ion laser emitting at 514.5-nm or a NIR diode laser emitting at 830-nm. The residual micro stresses within and surrounding the indentation impressions were monitored by mapping the position of the ν₁(PO₄) band of (crystalline) hydroxyapatite. The Raman maps coincided well with the optical micrographs of the samples. Despite the presence of a fluorescence background from the organic component of human enamel, spectra collected using 514.5-nm excitation exhibited more significant shifts in the position of the ν₁(PO₄) band than spectra collected using 830-nm excitation. This implies that the former excitation may be a more appropriate excitation for stress detection. It was concluded that Raman microspectroscopy provides a novel high-resolution and non-destructive method for exploring the role of microstructure on the residual stress distribution within natural biocomposites. Figure Stress maps of nanoindentation impressions on both human enamel and hydroxyapatite disk via Raman Microspectroscopy     

Semi-quantitative chemical analysis of hard coatings by Raman micro-spectroscopy: the aluminium chromium nitride system as an example

A new method for chemical analyses of nitride-based hard coatings is presented. Raman band shifts in the spectra of Al _x Cr_1−x N coatings, deposited by physical vapour deposition from Al _x Cr_1−x targets with x _T,Al = 0, 0.25, 0.50, 0.70 and 0.85, are calibrated using compositional data of the coatings derived by elastic recoil detection analysis (ERDA) and electron probe micro-analysis (EPMA). Inserting the composition-dependent Raman shift of a combinatorial acoustic-optic lattice mode into an empirically derived equation allows the determination of Al/Cr ratios of the coating with an accuracy of about ±2%. Spot, line and area analyses of coated cemented carbide and cold work steel samples by using a computer-controlled, motorized x,y-stage are demonstrated and the most important errors influencing precision and accuracy are discussed. Figure Raman map of a coated cold-work steel sample     

Fast Fabrication and Judgement of Tip-Enhanced Raman Spectroscopy-Active Tips

The quality of the scanning tip is crucial for tip-enhanced Raman spectroscopy (TERS) experiments towards large signal enhancement and high spatial resolution. In this work, we report a controllable fabrication method to prepare TERS-active tips by modifying the tip apex at the atomic scale, and propose two important criteria to in-situ judge the tip's TERS activity for tip-enhanced Raman measurements. One criterion is based on the downshift of the first image potential state to monitor the coupling between the far-field incident laser and near-field plasmon; the other is based on the appearance of the low-wavenumber Raman peaks associated with an atomistic protrusion at the tip apex to judge the coupling efficiency of emissions from the near field to the far field. This work provides an effective method to quickly fabricate and judge TERS-active tips before real TERS experiments on target molecules and other materials, which is believed to be instrumental for the development of TERS and other tip-enhanced spectroscopic techniques.     

Characterization of cellular chemical dynamics using combined microfluidic and Raman techniques

The integration of a range of technologies including microfluidics, surface-enhanced Raman scattering and confocal microspectroscopy has been successfully used to characterize in situ single living CHO (Chinese hamster ovary) cells with a high degree of spatial (in three dimensions) and temporal (1 s per spectrum) resolution. Following the introduction of a continuous flow of ionomycin, the real time spectral response from the cell was monitored during the agonist-evoked Ca²⁺ flux process. The methodology described has the potential to be used for the study of the cellular dynamics of a range of signalling processes. Figure Spectral mapping of a single CHO cell     

Raman spectroscopic investigation of cocaine hydrochloride on human nail in a forensic context

This study describes the application of Raman spectroscopy to the detection of drugs of abuse and noncontrolled substances used in the adulteration of drugs of abuse on human nail. Contamination of the nail may result from handling or abusing these substances. Raman spectra of pure cocaine hydrochloride, a seized street sample of cocaine hydrochloride (77%), and paracetamol could be acquired from drug crystals on the surface of the nail. An added difficulty in the analytical procedure is afforded by the presence of a nail varnish coating the nail fragment. By using confocal Raman spectroscopy, spectra of the drugs under nail varnish could be acquired. Spectra of the drugs could be readily obtained nondestructively within three minutes with little or no sample preparation. Raman spectra could be acquired from drug particles with an average size of 5–20 μm. Acquisition of Raman point maps of crystals from both pure and street samples of cocaine hydrochloride under nail varnish is also reported. Figure Raman spectrum and point Raman map of cocaine HCI     

Regular variations in organic matrix composition of small yellow croaker (Pseudociaena polyactis) otoliths: an in situ Raman microspectroscopy and mapping study

The stonelike otoliths from the ears of fish consist of calcium carbonate crystallites embedded in an organic matrix framework. The organic matrix has long been known to play a pivotal role in the biomineralization of otoliths, and different methods have been used to conduct investigations on it. A new sensitive method for the in situ study of the regular variations in the organic matrix composition of serial small yellow croaker otoliths by Raman microspectroscopy and mapping is described. The major collagen bands were always observed around 1,272 cm^-1 (amide III) and 1600–1690 cm^-1 (amide I), and 1443 and 2800–3100 cm^-1 (bending and stretching modes of CH groups, respectively). Aromatic amino acids, such as phenylalanine and tyrosine, were identified at 1,003 cm^-1 and at 830 and 853 cm^-1. Tryptophan was assigned at 1,555 cm^-1, and it was firstly found in otoliths. A regular calcification process in otoliths was observed in Raman spectral mapping results. Corresponding changes were clearly seen in the concentrations of the organic matrix and aragonite (CaCO₃) in otoliths.      

Raman spectroscopic study of bacterial endospores

Endospores and endospore-forming bacteria were studied by Raman spectroscopy. Raman spectra were recorded from Bacillus licheniformis LMG 7634 at different steps during growth and spore formation, and from spore suspensions obtained from diverse Bacillus and Paenibacillus strains cultured in different conditions (growth media, temperature, peroxide treatment). Raman bands of calcium dipicolinate and amino acids such as phenylalanine and tyrosine are more intense in the spectra of sporulating bacteria compared with those of bacteria from earlier phases of growth. Raman spectroscopy can thus be used to detect sporulation of cells by a characteristic band at 1,018 cm^–1 from calcium dipicolinate. The increase in amino acids could possibly be explained by the formation of small acid-soluble proteins that saturate the endospore DNA. Large variations in Raman spectra of endospore suspensions of different strains or different culturing conditions were observed. Next to calcium dipicolinate, tyrosine and phenylalanine, band differences at 527 and 638 cm^–1 were observed in the spectra of some of the B. sporothermodurans spore suspensions. These bands were assigned to the incorporation of cysteine residues in spore coat proteins. In conclusion, Raman spectroscopy is a fast technique to provide useful information about several spore components. Figure A difference spectrum between Raman spectra of B. licheniformis LMG 7634 cultured for 6 days and 1 day, together with the reference Raman spectrum of calcium dipicolinate     

Tip-enhanced near-field optical microscopy of carbon nanotubes

We review recent experimental studies on single-walled carbon nanotubes on substrates using tip-enhanced near-field optical microscopy (TENOM). High-resolution optical and topographic imaging with sub 15 nm spatial resolution is shown to provide novel insights into the spectroscopic properties of these nanoscale materials. In the case of semiconducting nanotubes, the simultaneous observation of Raman scattering and photoluminescence (PL) is possible, enabling a direct correlation between vibrational and electronic properties on the nanoscale. So far, applications of TENOM have focused on the spectroscopy of localized phonon modes, local band energy renormalizations induced by charge carrier doping, the environmental sensitivity of nanotube PL, and inter-nanotube energy transfer. At the end of this review we discuss the remaining limitations and challenges in this field. Figure Tip-enhanced Raman scattering and photoluminescence spectroscopy with sub 15 nm spatial resolution provides novel insights into the electronic and vibronic properties of single-walled carbon nanotubes.     

Chemical analysis of acoustically levitated drops by Raman spectroscopy

An experimental apparatus combining Raman spectroscopy with acoustic levitation, Raman acoustic levitation spectroscopy (RALS), is investigated in the field of physical and chemical analytics. Whereas acoustic levitation enables the contactless handling of microsized samples, Raman spectroscopy offers the advantage of a noninvasive method without complex sample preparation. After carrying out some systematic tests to probe the sensitivity of the technique to drop size, shape, and position, RALS has been successfully applied in monitoring sample dilution and preconcentration, evaporation, crystallization, an acid–base reaction, and analytes in a surface-enhanced Raman spectroscopy colloidal suspension. Figure We have systematically investigated the analytical potential of Raman spectroscopy of samples in acoustically levitated drops.     

Structural and analytical studies of silica accumulations in <Emphasis Type="Italic">Equisetum hyemale</Emphasis>

Horsetail (Equisetum spp.) is known as one of the strongest accumulators of silicon among higher terrestrial plants. We use the combination of position-resolved analytical techniques, namely microtomography, energy-dispersive X-Ray elemental mapping, Raman microscopy, as well as small-angle and wide-angle scattering of X-rays, to study the type, distribution and nanostructure of silica in the internodes of Equisetum hyemale. The predominant silicification pattern is a thin continuous layer on the entire outer epidermis with the highest density in particular knob regions of the long epidermal cells. The knob tips contain up to 33 wt% silicon in the form of pure hydrated amorphous silica, while the silica content is lower in the inner part of the knobs and on the continuous layer. In contrast to the knob tips, the silica in these regions lacks silanol groups and is proposed to be in close association with polysaccharides. No mentionable amount of crystalline silica is detected by wide-angle X-ray scattering. The small-angle X-ray scattering data are consistent with the presence of colloidal, sheet-like silica agglomerates with a thickness of about 2 nm. From these results we conclude that there are at least two distinct forms of silica in E. hyemale which may have different functions. The close association of silica with cell wall polymers suggests that they may act as a polymeric template that controls the shape and size of the colloidal silica particles similar to many other biominerals and mineralised tissues. We propose that owing to its specific distribution in E. hyemale, a protective role and possibly also an important biomechanical role are among the most likely functions of silica in these plants. Figure 3D rendering of X-ray microtomography data from a dry Equisetum hyemale stalk. The red colour indicates high X-ray absorption values due to local silica accumulations     

Raman spectroscopy of <Emphasis Type="Italic">natron</Emphasis>: shedding light on ancient Egyptian mummification

The mummification ritual in ancient Egypt involved the evisceration of the corpse and its desiccation using natron, a naturally occurring evaporitic mineral deposit from the Wadi Natrun, Egypt. The deposit typically contains sodium carbonate, sodium bicarbonate and impurities of chloride and sulfate as its major elemental components. It is believed that the function of the natron was to rapidly remove the water from the cadaver to prevent microbial attack associated with subsequent biological tissue degradation and putrefaction. Several specimens of natron that were recently collected from the Wadi Natrun contained coloured zones interspersed with the mineral matrix that are superficially reminiscent of extremophilic cyanobacterial colonisation found elsewhere in hot and cold deserts. Raman spectroscopy of these specimens using visible and near-infrared laser excitation has revealed not only the mineral composition of the natron, but also evidence for the presence of cyanobacterial colonies in several coloured zones observed in the mineral matrix. Key Raman biosignatures of carotenoids, scytonemin and chlorophyll have been identified. Figure The mummification ritual in ancient Egypt involved the evisceration of the corpse and its desiccation using natron, a naturally occurring evaporitic mineral deposit from the Wadi Natrun, Egypt. The deposit typically contains sodium carbonate, sodium bicarbonate and impurities of chloride and sulfate as its major elemental components. It is believed that the function of the natron was to rapidly remove the water from the cadaver to prevent microbial attack associated with subsequent biological tissue degradation and putrefaction. Several specimens of natron that were recently collected from the Wadi Natrun contained coloured zones interspersed with the mineral matrix that are superficially reminiscent of extremophilic cyanobacterial colonisation found elsewhere in hot and cold deserts. Raman spectroscopy of these specimens using visible and near-infrared laser excitation has revealed not only the mineral composition of the natron, but also evidence for the presence of cyanobacterial colonies in several coloured zones observed in the mineral matrix. Key Raman biosignatures of carotenoids, scytonemin and chlorophyll have been identified.     

Label-free detection with micro optical fluidic systems (MOFS): a review

The paper reviews the state-of-art for micro optical fluidic systems (MOFS), or optofluidics, which employs optics and fluidics in a microsystem environment to perform novel functionalities and in-depth analysis in the biophysical area. Various topics, which include the introduction of MOFS in biomedical engineering, the implementation of near-field optics and also the applications of MOFS to biophysical studies, are discussed. Different optical detection techniques, such as evanescent wave, surface plasmon resonance, surface enhanced Raman scattering, resonators and transistors, have been studied extensively and integrated into MOFS. In addition, MOFS also provides a platform for various studies of cell biophysics, such as cell mass determination and cell Young’s modulus measurement. Figure Cell encapsulation and trapping for refractive index measurement in MOFS     

Noninvasive methods for the investigation of ancient Chinese jades: an integrated analytical approach

This paper reports on an integrated analytical approach for the noninvasive characterization of Chinese nephrite samples, encompassing both geological reference specimens and museum objects. Natural variations induced by cationic substitutions, as well as human-induced alterations such as heating, which both affect color, are the focus of this contribution. Totally noninvasive methods of analysis were used, including X-ray fluorescence spectroscopy, Raman microspectroscopy, visible reflectance spectroscopy and X-ray diffraction; moreover, the feasibility of using a portable Raman spectrometer for the in-field identification of jades has been demonstrated. Fe/Fe+Mg (% p.f.u.) ratios of the jades have been calculated based on hydroxyl stretching Raman bands, which will provide an important addition to similar data that are being collected at major museums in the Western and Eastern hemispheres.      

Effect of sample and substrate electric properties on the electric field enhancement at the apex of SPM nanotips

Finite element (FE) models were built to define the optimal experimental conditions for tip-enhanced Raman spectroscopy (TERS) of thin samples. TERS experimental conditions were mimicked by including in the FE models dielectric or metallic substrates with thin dielectric samples and by considering the wavelength dependence of the dielectric properties for the metallic materials. Electromagnetic coupling between the substrate/sample and the SPM tips led to dramatic changes of both the spatial distribution and magnitude of the scattered electric field which depended on the substrate dielectric permittivity and excitation wavelength. Raman scattering as high as 10(8) with a spatial resolution of approximately 8 nm was estimated for gold SPM tips and gold substrate when excitation is performed at 532 nm (near-resonance wavelength). For dielectric samples (approximately 4 nm thick), the enhancement of Raman scattering intensity is estimated at approximately 10(5); this does not depend significantly on the sample dielectric permittivity for dielectric samples. These results suggest that TERS experimental conditions should be estimated and optimized for every individual application considering the geometric factors and electric properties of the materials involved. Such optimizations could enlarge the range of applications for TERS to samples eliciting weaker intrinsic Raman scattering, such as biological samples.     

Non-destructive analysis of museum objects by fibre-optic Raman spectroscopy

Raman spectroscopy is a versatile technique that has frequently been applied for the investigation of art objects. By using mobile Raman instrumentation it is possible to investigate the artworks without the need for sampling. This work evaluates the use of a dedicated mobile spectrometer for the investigation of a range of museum objects in museums in Scotland, including antique Egyptian sarcophagi, a panel painting, painted surfaces on paper and textile, and the painted lid and soundboard of an early keyboard instrument. The investigations of these artefacts illustrate some analytical challenges that arise when analysing museum objects, including fluorescing varnish layers, ambient sunlight, large dimensions of artefacts and the need to handle fragile objects with care. Analysis of the musical instrument (the Mar virginals) was undertaken in the exhibition gallery, while on display, which meant that interaction with the public and health and safety issues had to be taken into account. Experimental set-up for the non-destructive Raman spectroscopic investigation of a textile banner in the National Museums of Scotland     

Distinguishing Enantiomers by Tip-Enhanced Raman Scattering: Chemically Modified Silver Tip with an Asymmetric Atomic Arrangement

Discrimination between enantiomers is achieved by tip-enhanced Raman scattering (TERS) using a silver tip that is chemically modified by an achiral para-mercaptopyridine (pMPY) probe molecule. Differences in the relative intensities of the pMPY spectra were monitored for three pairs of enantiomers containing hydroxy (−OH) and/or amino (−NH₂) groups. The N: or N⁺−H functionality of the pMPY-modified tip participates in hydrogen-bond interactions with a particular molecular orientation of each chiral isomer. The asymmetric arrangement of silver atoms at the apex of the tip induces an asymmetric electric field, which causes the tip to become a chiral center. Differences in the charge-transfer (CT) states of the metal-achiral probe system in conjunction with the asymmetric electric field produce different enhancements in the Raman signals of the two enantiomers. The near-field effect of the asymmetric electric field, which depends on the number of analyte functional groups capable of hydrogen-bond formation, improves the degree of discrimination.