The influence of the nature of the solvent on the crystal structure and the character of formation of hydrogen bonds inN′-(5-nitrofurfurylidene)isonicotinehydrazide

N(5-Nitrofurfurylidene)isonicotinehydrazide (1) was synthesized in the reaction of nicotinic acid hydrazide with 5-nitrofurfurol in anhydrous or aqueous ethanol. Crystals of different shape and color were obtained depending on the conditions of synthesis and the nature of the solvent. As was established by IR spectroscopy, compound1 in the crystalline state forms solvates of various types. An X-ray study of two different crystals, one obtained by recrystallization from methanol (1a), and the other obtained from aqueous acetic acid (1b), was performed. In the crystal structure of1a intermolecular hydrogen bonds (IMHB) of the NH...N(Py) type occur; the crystals1b are built of solvates with one molecule of acetic acid in which the components are bonded by the IMHB (Ac)O-H..N(Py). The solvates are linked in an infinite chain by the amidohydrate IMHB C=O...W...H-N.Translated fromlzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 2263–2268, September, 1996.     

SYNTHESIS OF (2,3,4,6-TETRA-O-ACETYL-α-D-GLYCOPYRANOSYL) THIOPHENE DERIVATIVES AS NEW C-NUCLEOSIDE ANALOGUES[1]

Treatment of 2-(2,3,4,6-tetra-O-acetyl-α-D-glucopyranosyl)ethanal (1a) and 2-(2,3,4,6-tetra-O-acetyl-α-D-galactopyranosyl)ethanal (1b) respectively with malononitrile in the presence of silica gel provided the corresponding 4-[2,3,4,6-tetra-O-acetyl-α-D-glycopyranosyl]-2-cyanocrotononitriles (2a) and (2b). Starting from 2a and 2b, respectively, cyclizations with sulfur and triethylamine yielded 5-[2,3,4,6-tetra-O-acetyl-α-D-glycopyranosyl]-2-aminothiophene-3-carbonitriles (3a) and (3b). Further cyclizations could be achieved by utilizing of triethyl orthoformate/ammonia to furnish the 6-(α-D-glycopyranosyl)thieno[2,3-d]pyrimidine-4-amines 4a and 4b.     

Synthesis and Structures of New Enaminones

Two isomeric enaminones were obtained by reaction of ethyl 2-hydroxy-4-(4-hydroxy-6-methyl2H-pyran-2-on-3-yl)-4-oxo-2-butenoate (1) and amines (aniline, benzylamine, butylamine and tyramine) in ethanol. The structures of isomers were studied by ¹³C and ¹H NMR spectra, whereas in the case of isomers 2b, 3a, and 4a (Scheme 1), the crystal structures have been determined by single crystal X-ray diffractometry. The compounds 2b and 3a exist in the solid state as N–C=C–C=O, whereas 4a is in the N–C=C–C–OH tautomeric form (Scheme 2, form A and B, respectively). All three structures exhibit very short intramolecular hydrogen bonds of O–H···O [in the range 2.396(3) – 2.448(3) Å] and N–H···O [in the range 2.580(5) – 2.679(3) Å] type, that are reinforced by delocalization. The crystal structures are in addition stabilized by C–H···O weak hydrogen bonds. In 2b and 3a, the discrete dimers are formed by eight-membered ring containing hydrogen bonds; in 4a, the infinite chains along [1 0 1] direction are formed.     

Cooperative N–H···N,N–H···O,and O–H···N bonded molecular dimers of two new 3,5-diaryl-1<Emphasis Type="Italic">H</Emphasis>-pyrazoles

Two new 3,5-diaryl-1H-pyrazoles: 3(5)-(4-tert-butylphenyl)-5(3)-(naphthalene-2-yl)-1H-pyrazole (1) and 5-(4-(benzyloxy)phenyl)-3-(furan-2-yl)-1H-pyrazole (2) were synthesized and characterized. Two strong ions peaks [2M]⁺ and [2M + Na]⁺ observed in the ESI–MS spectra are attributed to the dimerization process in solution formed by intermolecular N–H···N hydrogen bonds. The crystal structures have been determined by X-ray crystal structure analysis. Compound 1 exists as a pair of tautomers 1a and 1b, and its dimer [R ₂²(6) motif] is formed by the tautomers 1a and 1b. Compound 2 only exists as a 2a tautomer, and interesting intermolecular N–H···O and O–H···N hydrogen bonds link two pyrazoles and two methanol molecules, leading to the formation of an R ₄⁴(10) dimer motif.     

Crystal and molecular structure of (±)-2-[(1<Emphasis Type="Italic">S</Emphasis>,3<Emphasis Type="Italic">S</Emphasis>)-3-acetyl-2,2-dimethylcyclobutyl]-N-(<Emphasis Type="Italic">p</Emphasis>-tolyl)acetamide

The structure of (±)-2-[(1S,3S)-3-acetyl-2,2-dimethylcyclobutyl]-N-(p-tolyl)acetamide has been determined by single crystal X-ray diffraction analysis. The crystal belongs to triclinic system, space group P-1, a = 8.8700(18) Å, b = 10.331(2) Å, c = 10.363(2) Å, α = 71.11(3)°, β = 65.06(3)°, γ = 72.18(3)°, V = 798.6(3) ų, Z = 2, formula unit C₁₇H₂₃NO₂. The title compound has a fragment of 2,2-dimethylcyclo-butane and its conformation represents semi-chair. The intermolecular hydrogen bonds N-H...O and C-H...O are revealed.     

Supramolecular architecture built of Co(II) and a tripodal ligand containing 1-D water tapes with (H2O)16 cluster units

The reaction of Co(NO₃)₂?·?6H₂O with a tripodal ligand leads to a new complex {[Co(L)]?·?2NO₃?·?8H₂O} (1) confirmed by single-crystal X-ray diffraction, infrared spectroscopy, and elemental analysis. The particular interest of 1 is in the formation of a 1-D water tape consisting of (H₂O)₁₆ cluster units, the neighboring water tapes are connected by free nitrate anions via hydrogen bonds into a 2-D guest layer. These guest layers are alternately packed face-to-face with the 2-D host layers along the a-axis to form a 3-D supramolecular architecture. There exist C–H?···?N and C–H?···?O weak hydrogen bonds between the guest layer and host layer. These weak hydrogen bonds and water–nitrate, water–water hydrogen bonds are important for the stability of the overall structure.     

Two polymorphic forms of N‐(4‐chloro­phenyl)‐5‐[(4‐chlorophenyl)aminomethyl]‐6‐methyl‐2‐phenyl­pyrimidin‐4‐amine

Two polymorphic forms of the title compound, C₂₄H₂₀Cl₂N₄, were obtained and characterized using X‐ray crystal structure analysis. Colourless crystals of polymorph (Ia) were obtained from the oily mother residue. Recrystallization of polymorph (Ia) from an acetone–methanol mixture resulted in pale‐yellow crystals of polymorph (Ib). The major feature distinguishing the two polymorphic forms is their inter­action modes, and hence their packing arrangements. In the crystal structure of polymorph (Ia), there are N—H⋯N hydrogen bonds and also aromatic π–π stacking inter­actions between mol­ecules. The mol­ecules of polymorph (Ib) are linked by N—H⋯Cl hydrogen bonds only.     

ENANTIOSELECTIVE TOTAL SYNTHESES OF 13-ACETYL- 12-HYDROXY-PODOCARPANE- 8,11,13-TRIENE-7-ONE

ABSTRACT

A enantioselective total synthetic route to (+)-13-acteyl-12-hydroxy-podocarpane-8,11,13-triene-7-one 1a and (?)-13-acetyl-12-hydroxy-podocarpane-8,11,13-triene-7-one 1b from (S)-(?)-α-cyclocitral 8a and (R)-(+)-α-cyclocitral 8b was developed.     

Comparative X-ray structural study of laterally mono-ethyl substituted 5,11,17,23-tetra-tert-butyl-25,26,27,28-tetra-methoxycalix[4]arene and its non-substituted parent compound including guest free and solvated forms. Chemical straightening of guest channels

Three solvate crystal structures of the laterally ethyl substituted tetra-tert-butyltetramethoxycalix[4]arene 1 [(1·THF (1a), 1·CHCl₃ (1b) and 1·CH₂Cl₂ (1c)] are compared to the corresponding solvent-free structure (1) using single crystal X-ray structure determination, isostructurality and molecular isometricity calculations. To study the effect of the lateral substitution, the laterally non-substituted host with the guest THF (2a) is also included to the comparison. The calixarene molecules in the different structures all adopt the partial cone conformation with different affection of the respective guest molecules, always being positioned interstitially. Depending on the lateral substitution and the size of the included guests, the molecular conformation of the calix[4]arene shows small differences relating to the alignment of the arene units. The channels disposable of the solvent guest molecules in the crystal structures straighten as the effect of lateral substitution of the host calix[4]arene. The orthorhombic crystal structures of 1a–c are isostructural irrespective of the included solvent molecules, while 1 and 2a crystallise in the same monoclinic space group.     

An X-ray crystallographic study of the inclusion properties of additionally dimethylated members of the 2′-hydroxy-2,2,4-trimethylflavan host series

Consideration of the shape and hydrogen bonding pattern of anentire guest unit, in the known 2:1:2 complex of 2′-hydroxy-2,4,4,7,4′-pentamethylflavan (1) with 1,4-dioxan and water, has indicated a structurally compatible guest,trans-1,4-bis(hydroxymethyl)cyclohexane (3b) which is selectively clathrated from a mixture with itscis isomer (3a). The new complex is triclinic, space group,P \(\bar 1\) , witha=8.137(1),b=9.106(1),c=14.552(2) Å, α=93.56(1), β=94.08(1), γ=98.62(1)°, and two host and one guest molecule in the unit cell. A novel hydrogen bonded host-guest arrangement has also been found for host (1), involving ethanol and piperazine [triclinic, space groupP \(\bar 1\) , witha=8.438(1),b=10.252(1),c=14.052(1) Å, α=71.28(1), β=89.72(1), γ=83.88(1)δ]; while for the 1:1 ether adduct of (1) the triclinic unit cell, space groupP \(\bar 1\) , is approximately doubled in volume [a=8.309(2),b=10.546(3),c=26.664(6) Å, α=102.10(2), β=100.48(2), γ=81.04(2)°], there now being two crystallographically independent host-guest units involving ?OH·OEt₂ hydrogen bonds of length 2.71(1) Å and 2.77(1)Å. In the 2:1 complex of the isomeric host 2′-hydroxy-2,4,4,6,5′-pentamethylfavan (2) withN, N′-dimethylpiperazine (5) [triclinic space groupP \(\bar 1\) , witha=7.411(1),b=10.143(3),c=15.109(3)Å, α=98.73(2), β=88.30(1), γ=109.72(2)°] the centrosymmetric chair-shaped guest molecule is clamped by two axially oriented ?OH...N hydrogen bonds of length 2.759(3)Å.     

Inclusion Properties and Crystal Structure of Clathrates Constructed Based on “π-sandwich”

Abstract

Inclusion behavior of structurally similar host compounds, 1,4-bis[1-(9-anthryl)-3-propen-1-on-3-yl]benzene (1) and 1,4-bis[3-(9-anthryl)-3-propen-1-on-1-yl]benzene (2), has been studied. Both hosts preferred cyclic, non-branched small molecules as a guest component, to yield 1:2 clathrates specifically. X-ray powder diffraction studies revealed that those 1:2 clathrates of 1 and 2 were respectively isostructural. X-ray analyses of (1)(THF)₂ (P 1, a = 10.910(2), b = 19.656(5), c = 9.172(4) Å, α = 95.58(3), β = 93.67(2), γ = 103.30(2)°, D _calc = 1.195 g cm^?3, Z = 2, and R = 0.067 for 8644 observed reflections) and (2)(1,4-dioxane)₂, (P2₁/n, a = 5.661(1), b = 17.971(3), c = 18.619(3) Å, β = 91.37(2)°, D _calc = 1.254 g cm^?3, Z = 2, and R = 0.097 for 4353 observed reflections) illuminated that their guest preference should be ascribed to the commonly observed π-sandwich” structure, in which guest molecules are enclathrated between two anthracene planes of the host molecules.     

Versatile Inclusion Behaviour of a Dinitrocalix[4]arene Having Two Ester Pendants – Preparation and X-ray Crystal Structures of Complexes

An upper-rim dinitro-substituted calix[4]arene possessing two lower-rim ethyl ester pendant groups (1) has been shown to form solid inclusion compounds with acetone (1:1) (1a), DMF (1:1) (1b), DMSO (1:1) (1c) and n-BuOH (2:1) (1d). X-ray crystal structures of the four complexes 1a–d are reported and comparatively discussed, including isostructurality calculations. Although the solid-state conformation of the dinitrocalix[4]arene moiety, stabilized by two intramolecular O–H…O bonds, is maintained in the four inclusion compounds, and all four co-crystals have similar unit cell dimensions and identical space group symmetries, only three of them (1a–c) are homostructural. Depending on the nature of the guest molecule, either the upper or the lower rim site of the calixarene is involved in the complexation, demonstrating either cavitate- or clathrate-type of supramolecular interactions, respectively. Moreover, due to the different guest recognition modes, the calixarene host in 1d is rotated through a non-crystallographic virtual rotation of 180° within the unit cell, in relation to the host molecules in each of the other three homostructural compounds 1a–c, thus giving rise to supramolecular morphotropism – to our knowledge the first case ever described.     

Synthesis and Conformational Studies of Unnatural Pyrimidine Nucleosides

ABSTRACT

Starting from 3,4-di-O-acetyl-L-rhamnal (6) and thymine (7) the unsaturated nucleosides 1-(2′,3′,6′-trideoxy-4′-O-acetyl-α- and β-L-erythro-hex-2′-enopyranosyl)-thymine (8a and 8b) were prepared in anomerically pure form. In solution 8a was shown to be present in the ⁵ H _o and ⁰ H ₅ conformations, whereas the predominant conformation of 8b was ⁵ H _o. Chemical transformation of 8a and 8b led to the saturated nucleosides 1-(2′,3′,6′-trideoxy-α- and β-L-erythro-hexopyranosyl)thymine (10a and 10b, respectively), which were converted into 1-(4′-azido-2′,3′,4′,6′-tetradeoxy-α- and β-L-threo-hexopyranosyl)thymine (12a and 12b). Preliminary biological studies showed that 9b was inactive against the HIV-1 and HIV-2 viruses.     

Crystal Structures of Aripiprazole, a New Anti-psychotic Drug, and of its Inclusion Compounds with Methanol, Ethanol and Water

Aripiprazole, 7-[4-[4-(2,3-dichlorophenyl)-1-piperazinyl]butoxy]-3,4-dihydrocarbostyril, is an important new neuroleptic drug used in the treatment of schizophrenia and related psychoses. This study elucidates its detailed molecular structure and two preferred conformational forms, and relates to the solvates of this compound when crystallized from different environments. The latter is associated with the hydrogen-bonding capacity of aripiprazole through the piperazinyl and dihydrocarbostyril functions. Four unique crystal forms of this compound have been characterized using X-ray single crystal determinations, including an anhydrous structure (1), methanol (2) and hemi-ethanol (3) solvates and a hydrate (4). They were found to consist of hydrogen bonded dimers of the aripiprazole moieties that involve the cyclic (–NH–CO–)₂ di-amide interaction synthon in 1–3 (with the solvent molecules attached to them in 2 and 3), or of hydrogen bonded polymeric aggregates sustained by extended multiple bonding through water bridges in 4. These modes of supramolecular association involve two different conformers with similar energy of the drug moiety.     

Comparative study on two 2-pyrazoline derivatives with experimental and theoretical methods

Two 2-pyrazoline derivatives of 1-phenyl-3-(4-chlorophenyl)-5-(2-chlorophenyl)-2-pyrazoline (1) and 1-phenyl-3-(4-methylphenyl)-5-(2-chlorophenyl)-2-pyrazoline (2) have been synthesized and characterized by elemental analysis, IR, UV–Vis, and fluorescence spectra. The crystal structure of 2 has been determined by X-ray single crystal diffraction. For the two compounds, density functional theory (DFT) calculations of the structures and natural population atomic charge analysis have been performed at B3LYP/6-311G** level of theory. By using TD-DFT method, electron spectra of 1 and 2 have been predicted, which are in good agreement with the experimental ones. Comparative studies on 1 and 2 indicate that the change of substituted groups in 3-phenyl ring of pyrazoline ring will change the peak intensity and peak locations both in electron spectra and fluorescence spectra.     

Polymorphism for a novel phosphoramidate; NMR and X-ray crystallography

Abstract  

New phosphoramidates with formula 3-NC₅H₄C(O)NHP(O)XY (X=Y=Cl (1), X=Y=NH–C(CH₃)₃ (2a,2b), X=Y=N(C₄H₉)₂ (3), X=Cl, Y=N(C₂H₅)₂ (4) were synthesized and characterized by IR, ¹H-, ¹³C-, ³¹P-NMR spectroscopy and CHN elemental analysis. Surprisingly, the reaction of compound 2a with LaCl₃, 7H₂O in 3:1 M ratio leads to a polymorph of this compound (2b). NMR spectra indicate that ² J(PNH_amide) in 2b (7.0 Hz) is very much greater than in 2a (4.1 Hz), while δ(³¹P) values are identical for both of them. In IR spectra, υ(P=O) is weaker but υ(C=O) is stronger in 2a than in 2b. The structures of 2a, 2b were determined by X-ray crystallography. These compounds form centrosymmetric dimers via two intermolecular P=O……H–N hydrogen bonds. Strong intermolecular N–H…N, N–H…O and weak C–H…O hydrogen bonds lead to a three-dimensional polymeric cluster in the 2a while intermolecular strong N–H……N and weak C–H……O hydrogen bonds form a two-dimensional polymeric chain in 2b.     

Inclusion and selectivity of amides by p-terphenyl derivative bearing adamantanecarboxylic acid

Hydrogen-bonding compound (1), which is composed of p-terphenyl and adamantanecarboxylic acid, acted as a host molecule for three amides, respectively, forming crystals. Crystals containing the amides (1a and 1b) were produced from N,N-dimethylformamide (DMF) and N,N-diethylformamide (DEF) in 1:2 host:guest complexation stoichiometry, respectively, whereas guest-free crystals (1c) were generated from N-methylformamide (NMF). In the crystal structures of 1a and 1b, carboxylic acids of 1 interact with oxygen atoms of the amide guests through hydrogen bonds to afford network and layer architectures. Crystals 1a and 1b were given from equimolar binary mixtures of DMF or DEF and NMF, respectively. Further, from a mixture of DMF and DEF, guest-inclusion crystals 1d different from 1a and 1b were formed, where DMF was preferentially accommodated. Competition experiments revealed that the selectivity order of 1 for the amide guests was DMF?>?DEF???NMF.     

Synthesis of 4-acetyl-5(3)-amino-3(5)-methylpyrazoles and pyrazolo[3,4-d]pyrimidines from diacetylketeneN,S-acetal

Isomeric 4-acetyl-5-amino-3-methyl- and 4-acetyl-3-amino-5-methylpyrazoles (2, 3) were formed in the reaction of hydrazines with 3-[amino(methylthio)methylene]pentan-2,4-dione (1) (diacetylketeneN,S-acetal). Pyrazolo[3,4-d]pyrimidines (5a,b) were synthesized by condensation of 4-acetyl-5-amino-1,3-dimethylpyrazole (2a) with amide dimethylacetals followed by treatment with ammonium acetate. The structures of the compounds obtained were confirmed by¹³C and¹⁵N NMR spectroscopy.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1429–1433, August, 1993.     

Crystal structures of dibenzo-14-crown-4 alcohol and diol monohydrates

Monohydrate complexes1–3 ofsym-hydroxydibenzo-14-crown-4,sym-cis-dihydroxydibenzo-14-crown-4 andsym-trans-dihydroxydibenzo-14-crown-4, respectively, have been prepared and their solid state structures determined. For all three complexes the space group wasCmc2₁. The crystal data are: for1,a=16.256(10),b=12.076(5),c=8.767(3) Å,V=1721.0 ų withZ=4; for2,a=16.437(3),b=11.997(4),c=8.640(3) Å,V=1703.8 ų withZ=4; for3,a=16.528(7),b=12.306(3),c=8.540(3) Å,V=1737.0 ų withZ=4. The structures were refined to [R, R _w, unique data withF<n (F)]: for1, 0.066, 0.055, 828, 2.5; for2, 0.034, 0.035, 1090, 3.0; for3, 0.047, 0.036, 1038, 3.0. The three crystal structures have a high degree of isomophism and the dibenzo-14-crown-4 units in the three host-guest complexes are nearly identical. Intramolecular hydrogen bonds link an alcohol oxygen atom of the host to the oxygen atom of the guest water molecule and the oxygen atom of the guest water molecule to ether oxygen atoms of the host in1–3. In2 and3, there is an intermolecular hydrogen bond between the hydrogen atom of an alcohol group of the host and the oxygen atom of a symmetry-related water molecule guest of another complex.     

Synthesis of polyfunctionalized furans from 3-acetyl-1-aryl-2-pentene-1,4-diones

The BF₃-catalyzed cyclization of 3-acetyl-1-aryl-2-pentene-1,4-diones 1a-e in the presence of water in boiling tetrahydrofuran gave bis(3-acetyl-5-aryl-2-furyl)methanes 2a-e in 26-79% yields along with a small amount of 3-acetyl-5-aryl-2-methylfurans 3a-e. The exact structure of 2a was determined by X-ray crystallography. The use of a half volume of the solvent for the reaction of 1a resulted in the formation of 2,4-bis(3-acetyl-5-phenyl-2-furfuryl)-3-acetyl-5-phenylfuran (4) together with 2a and 3a. A similar reaction of 1a was carried out in the presence of 3-acetyl-5-(4-methylphenyl)-2-methylfuran (3d) to afford 4-(3-acetyl-5-phenyl-2-furfuryl)-3-acetyl-5-(4-methylphenyl)-2-methylfuran (5) in 49% yield. The BF₃-catalyzed reaction of 1a with 2,4-pentanedione in dry tetrahydrofuran at 23°C gave 3-(3-acetyl-5-phenyl-2-furfuryl)-4-hydroxy-3-penten-2-one (6a) and 3-(3-acetyl-2-methyl-4-phenyl-5-furyl)-4-hydroxy-3-penten-2-one (7a) in 66 and 24% yields, respectively. The product distribution depended on the reaction temperature. A similar reaction of 1b-e also yielded the corresponding trisubstituted furans 6b-e and tetrasubstituted furans 7b-e in good yields. These results suggested the presence of the furfuryl carbocation intermediate A during the reaction. The one-pot synthesis of 6a and 7a was also achieved by a similar reaction using phenylglyoxal. The deoxygenation of 1a with triphenylphosphine gave 3a in 88% yield, while 1a was treated with concentrated hydrochloric acid to yield 3-acetyl-2-chloromethyl-5-phenylfuran (8) which was quantitatively transformed in ethanol into 3-acetyl-2-ethoxymethyl-5-phenylfuran (9) and in water into 3-acetyl-5-phenylfurfuryl alcohol (10), respectively. In addition, the Diels-Alder reaction of cyclopantadiene with 1a gave the corresponding [4+2] cycloaddition products 11 and 12.