A simple model of DNA denaturation and mutually avoiding walks statistics

Recently Garel, Monthus and Orland [Europhys. Lett. 55, 132 (2001)] considered a model of DNA denaturation in which excluded volume effects within each strand are neglected, while mutual avoidance is included. Using an approximate scheme they found a first order denaturation. We show that a first order transition for this model follows from exact results for the statistics of two mutually avoiding random walks, whose reunion exponent is c > 2, both in two and three dimensions. Analytical estimates of c due to the interactions with other denaturated loops, as well as numerical calculations, indicate that the transition is even sharper than in models where excluded volume effects are fully incorporated. The probability distribution of distances between homologous base pairs decays as a power law at the transition. Received 8 July 2002 / Received in final form 25 July 2002 Published online 17 September 2002     

Localization-delocalization transition in one-dimensional system with long-range correlated diagonal disorder

We show that the electronic states in a one-dimensional (1D) Anderson model of diagonal disorder with long-range correlation proposed by de Moura and Lyra exhibit localization-delocalization phase transition in varying the energy of electrons. Using transfer matrix method, we calculate the average resistivity and investigate how it changes with the size of the system N. For given value of α (> 2) we find critical energies E_c1 and E_c2 such that the resistivity decreases with N as a power law ∝ N ^{- γ} for electron energies within the range of [E _c1, E _c2], and exponentially grows with N outside this range. Such behaviors persist in approaching the transition points and the exponent γ is in the range from 0.92 to 0.96. The origin of the delocalization in this 1D model is discussed. Received 18 December 2001 / Received in final form 2 May 2002 Published online 14 October 2002 RID="a" ID="a"e-mail: sjxiong@nju.edu.cn     

Phase transition and random-field induced domain wall response of SrTi O 3

The dielectric permittivity ε^′ - i of SrTi ¹⁸O ₃ (STO18) is studied under a dc electric field E as a function of the temperature, T. In ε^′ vs. T, a double-peak is found when 0 < E < 30 KV/m. While the peak at high-T is attributed to the smeared ferroelectric phase transition, the low-T one is induced by domain wall motion. The transverse Ising model including an external homogeneous and quenched random-fields is successfully used to describe both the smeared phase transition and the domain wall response in the low-T domain state. The calculations are in good agreement with the experimental results. Received 4 January 2002 / Received in final form 25 March 2002 Published online 19 July 2002     

Eigenstates of an operating quantum computer: hypersensitivity to static imperfections

We study the properties of eigenstates of an operating quantum computer which simulates the dynamical evolution in the regime of quantum chaos. Even if the quantum algorithm is polynomial in number of qubits n_q, it is shown that the ideal eigenstates become mixed and strongly modified by static imperfections above a certain threshold which drops exponentially with n_q. Above this threshold the quantum eigenstate entropy grows linearly with n_q but the computation remains reliable during a time scale which is polynomial in the imperfection strength and in n_q. Received 7 March 2002/ Received in final form 3 May 2002 Published online 19 July 2002     

Melting and unzipping of DNA

Existing experimental studies of the thermal denaturation of DNA yield sharp steps in the melting curve suggesting that the melting transition is first order. This transition has been theoretically studied since the early sixties, mostly within an approach in which the microscopic configurations of a DNA molecule consist of an alternating sequence of non-interacting bound segments and denaturated loops. Studies of these models neglect the repulsive, self-avoiding, interaction between different loops and segments and have invariably yielded continuous denaturation transitions. In the present study we take into account in an approximate way the excluded-volume interaction between denaturated loops and the rest of the chain. This is done by exploiting recent results on scaling properties of polymer networks of arbitrary topology. We also ignore the heterogeneity of the polymer. We obtain a first-order melting transition in d = 2 dimensions and above, consistent with the experimental results. We also consider within our approach the unzipping transition, which takes place when the two DNA strands are pulled apart by an external force acting on one end. We find that the under equilibrium condition the unzipping transition is also first order. Although the denaturation and unzipping transitions are thermodynamically first order, they do exhibit critical fluctuations in some of their properties. For instance, the loop size distribution decays algebraically at the transition and the length of the denaturated end segment diverges as the transition is approached. We evaluate these critical properties within our approach. Received 21 August 2001 and Received in final form 26 January 2002     

Factory-roof-shaped phase front at the paraelectric-ferroelectric transition in KD PO : an incoherent interface

The phase front during the 218 K transition in KD₂PO₄ crystals under a thermal gradient perpendicular to the c ferroelectric axis is observed to have a factory-roof shape. This shape is studied versus the magnitude of G_e in samples cut with faces in (100), (010), (001) planes or in ( 0), (110), (001) ones. A geometric approach as well as the calculation of the elastic-strain energy caused by lattice misfits along the phase front demonstrate the incoherent interface nature of the phase front. Furthemore, the results and their interpretation allow to predict the sign of the lattice deformation u _xx ( > 0). Received 25 April 2002 Published online 29 November 2002     

Slow regions percolate near glass transition

A nanosecond scale in situ probe reveals that a bulk linear polymer undergoes a sharp phase transition as a function of the degree of conversion, as it nears the glass transition. The scaling behaviour is in the same universality class as percolation. The exponents γ and β are found to be 1.7±0.1 and 0.41±0.01 in agreement with the best percolation results in three dimensions. Received 29 August 2002 RID="a" ID="a"e-mail: erzan@gursey.gov.tr e-mail: erzan@itu.edu.tr     

A remark on the large difference between the glueball mass and T<Subscript>c</Subscript> in quenched QCD

The lattice QCD studies indicate that the critical temperature T _c ≃ 260-280 MeV of the deconfinement phase transition in quenched QCD is considerably smaller than the lowest-lying glueball mass m _G ≃ 1500-1700 MeV, i.e., T _c ≪ m _G. As a consequence of this large difference, the thermal excitation of the glueball in the confinement phase is strongly suppressed by the statistical factor e ^-mG/Tc ≃ 0.00207 even near T ≃ T _c. We consider its physical implication, and argue the abnormal feature of the deconfinement phase transition in quenched QCD from the statistical viewpoint. To appreciate this, we demonstrate a statistical argument of the QCD phase transition using the recent lattice QCD data. From the phenomenological relation between T _c and the glueball mass, the deconfinement transition is found to take place in quenched QCD before a reasonable amount of glueballs is thermally excited. In this way, quenched QCD reveals a question “what is the trigger of the deconfinement phase transition ?” Received: 18 November 2002 / Accepted: 4 February 2003 / Published online: 29 April 2003     

Interferometry with entangled atoms

A quantum gravity-gradiometer consists of two spatially separated ensembles of atoms interrogated by pulses of a common laser beam. The laser pulses cause the probability amplitudes of atomic ground-state hyperfine levels to interfere, producing two, motion-sensitive, phase shifts, which allow the measurement of the average acceleration of each ensemble, and, via simple differencing, of the acceleration gradient. Here we propose entangling the quantum states of atoms from the two ensembles prior to the pulse sequence, and show that entanglement encodes their relative acceleration in a single interference phase which can be measured directly, with no need for differencing. Received 6 June 2002 / Received in final form 25 October 2002 Published online 28 January 2003     

DMRG studies on interchain coupling model for quasi-one-dimensional organic magnet

We introduce a solid-on-solid growth process which evolves by random deposition of dimers, surface diffusion, and evaporation of monomers from the edges of plateaus. It is shown that the model exhibits a robust transition from a smooth to a rough phase. The roughening transition is driven by an absorbing phase transition at the bottom layer of the interface, which displays the same type of critical behavior as the pair contact process with diffusion 2A↦3A, 2A↦. Received 14 October 2002 Published online 14 February 2003 RID="a" ID="a"e-mail: Haye.Hinrichsen@physik.uni-wuppertal.de     

Quasi-quantization of writhe in ideal knots

The values of writhe of the tightest conformations, found by the SONO algorithm, of all alternating prime knots with up to 10 crossings are analysed. The distribution of the writhe values is shown to be concentrated around the equally spaced levels. The “writhe quantum” is shown to be close to the rational 4/7 value. The deviation of the writhe values from the n(4/7) writhe levels scheme is analysed quantitatively. Received 29 February 2001 and Received in final form 17 August 2001     

The use of coherent states in the variational treatment of proton-neutron interactions

Coherent states are used as trial states to determine, variationally, the structure of the eigenvectors belonging to a schematic Hamiltonian consisting of single-particle, pairing and residual proton-neutron interaction terms. It is shown that the standard proton-neutron quasiparticle random-phase approximation (pn-QRPA) is recovered, as a variational theory, by replacing quasiparticle pair creation and annihilation operators by bosons. It is also shown that an exact, algebra preserving, mapping of the Hamiltonian is needed to describe the spectrum beyond the QRPA phase transition. The role of the spurious components of the trial wave functions is discussed. Received: 19 February 2002 / Accepted: 3 May 2002     

Euclidean random matrices, the glass transition and the boson peak

In this paper I will describe some results that have been recently obtained in the study of random Euclidean matrices, i.e. matrices that are functions of random points in Euclidean space. In the case of translation invariant matrices one generically finds a phase transition between a phonon phase and a saddle phase. If we apply these considerations to the study of the Hessian of the Hamiltonian of the particles of a fluid, we find that this phonon-saddle transition corresponds to the dynamical phase transition in glasses, that has been studied in the framework of the mode coupling approximation. The boson peak observed in glasses at low temperature is a remanent of this transition. Received 4 May 2002     

The secondary structure of RNA under tension

We study the force-induced unfolding of random disordered RNA or single-stranded DNA polymers. The system undergoes a second-order phase transition from a collapsed globular phase at low forces to an extensive necklace phase with a macroscopic end-to-end distance at high forces. At low temperatures, the sequence inhomogeneities modify the critical behaviour. We provide numerical evidence for the universality of the critical exponents which, by extrapolation of the scaling laws to zero force, contain useful information on the ground-state (f = 0) properties. This provides a good method for quantitative studies of scaling exponents characterizing the collapsed globule. In order to get rid of the blurring effect of thermal fluctuations, we restrict ourselves to the ground state at fixed external force. We analyze the statistics of rearrangements, in particular below the critical force, and point out its implications for force-extension experiments on single molecules. Received 18 June 2002 and Received in final form 23 September 2002 RID="a" ID="a"e-mail: muller@ipno.in2p3.fr     

Polaronic behavior in single- and many-electron Holstein model: A new perturbation approach

A new perturbation approach is developed for single- and many-electron Holstein model in one-, two-, and three-dimension. The results show that this approach has a good agreement with the Migdal theory in the adiabatic regime when the coupling is moderate (λ < 1), but with the Lang-Firsov theory in the antiadiabatic regime ( ω/W≫ 1). In the intermediate region, our approach can describe the transition from a large-polaron Fermi-liquid to the small-polaron, and this transition may be discontinuous in adiabatic regime, which means a phase transition appears in many-electron system. In single-electron case, we eliminate the abrupt transition using the degenerate perturbation theory, and the calculated ground state energy and effective mass are successfully compared with those of previous authors. Besides, the method has the advantage of requiring little computational effort. Received 27 December 2001 / Received in final form 8 April 2002 Published online 31 July 2002     

Lifetime measurements in 148Gd

Lifetimes of excited states in ¹⁴⁸Gd were measured using the recoil distance method with a plunger device coupled to the EUROBALL Ge detector array. The differential decay curve method in coincidence mode allowed the unambiguous determination of lifetimes of more than 20 excited states. The obtained transition strengths are in good agreement with the shell model calculations. The effect of the Z = 64 subshell closure on the B(E2 : 2⁺ → 0⁺) reduced strengths above the N = 82 magic number is discussed.-1 Received: 14 November 2002 / Accepted: 4 February 2003 / Published online: 29 April 2003     

Dynamical properties of constrained drops

In this communication we analyze the behavior of excited drops contained in spherical volumes. We study different properties of the dynamical systems, i.e. the maximum Lyapunov exponent MLE, the asymptotic distance in momentum space d _∞ and the normalized variance of the maximum fragment. It is shown that the constrained system behaves as undergoing a first-order phase transition at low densities while as a second-order one at high densities. The transition from liquid-like to vapor-like behavior is signaled both by the caloric curves, the thermal response functions and the MLE. The relationship between the MLE, d _∞, and the caloric curve is explored. Received: 28 March 2002 / Accepted: 17 May 2002     

Single-particle quadrupole electromagnetic transitions in p-shell and sd-shell nuclei

Electron scattering Coulomb form factors for the single-particle quadrupole transitions in p-shell and sd-shell nuclei have been studied. Core polarization effects are included through a microscopic theory that includes excitations from the core orbits up to higher orbits with 2ω excitations. The modified surface delta interaction is adopted as a residual interaction. The results are discussed for the ( 1p _1/2 ^-1↦1p _3/2 ^-1) proton transition in ¹⁵N, ( 1d _5/2↦2s _1/2) neutron transition in ¹⁷O and ( 1d _3/2 ^-1↦2s _1/2 ^-1) proton transition in ³⁹K. The inclusion of core polarization effects modifies the form factors markedly and describes the experimental data very well in both the absolute strength and the momentum transfer dependence. Received: 18 April 2002 / Accepted: 1 July 2002 / Published online: 6 March 2003 RID="a" ID="a"e-mail: baguniv@uruklink.net Communicated by A. Molinari     

A molecular theory of smectic C liquid crystals made of rod-like molecules

Organic compounds exhibiting the smectic C phase are made of rod-like molecules that have dipolar groups with lateral components. We argue that the off-axis character of the lateral dipolar groups can account for tilt in layered smectics (SmC, SmC*, SmI etc.). We develop a mean-field theory of the smectic C phase based on a single-particle potential of the form U _C ∝ sin(2θ)cosφ, consistent with the biaxial nature of the phase, where θ and φ are the polar and azimuthal angles, respectively. The hard-rod interactions that favour the smectic A phase with zero tilt angle are also included. The theoretical phase diagrams compare favourably with experimental trends. Our theory also leads to the following results: i) a first-order smectic C to smectic A transition above some value of the McMillan parameter α, leading to a tricritical point on the smectic C to smectic A transition line and ii) a first-order smectic C to smectic C transition over a very small range of values of the model parameters. We have also extended the theory to include the next higher-order term in the tilting potential and to include the effect of different tilt angles for the molecular core and the chain in the SmC phase. Received 3 August 2002 RID="a" ID="a"Present address: Department of Physics, Vijaya College, R. V. Road, Bangalore - 560 004, India. RID="b" ID="b"e-mail: nvmadhu@rri.res.in