Enhancing the Sensitivity of Aptameric Detection of Lysozyme with a “Feed‐Forward” Network of DNA‐Related Reaction Cycles

In this study, a network of DNA‐related reaction cycles was established to enhance the sensitivity of lysozyme detection with dual signal amplification, and aptamer‐based reactions were integrated into this system to provide high specificity. The network was organized in a feed‐forward manner: the “upstream cycles” recognized the lysozyme (the target) and released the “messenger strands” from probe A (a DNA construct); the “downstream cycles” received them and then released the “signal strands” from another DNA construct, probe B, in multiplied quantities to that of the original inputted lysozyme. The upstream cycles centered on “target‐displacement polymerization”, which circulates the lysozyme to provide primary amplification; the downstream cycles centered on “strand‐displacement polymerization”, which circulates the messenger strand to provide further amplification. There were also several “nicking–polymerization” cycles in both reaction groups that provide extra signal amplification. In total, the network enclosed eight interconnected and autonomic reaction cycles, with only two probes, two primers, and two enzymes needed as raw feeds, and the network can be operated simply in one‐pot mode. With this network, lysozyme could be quantified at lysozyme concentrations as low as 2.0×10^?14 M , with a detection limit of 3.6×10^?15 M (3σ rule), which was seven orders of magnitude lower than that obtained without any amplification(1.8×10^?8 M ). Detection of lysozyme in real serum samples confirmed the reliability and practicality of the assay based on this reported reaction network.     

“Assessing the RAFT Equilibrium Constant via Model Systems: An EPR Study”—Response to a Comment

We have presented an EPR‐based approach for deducing the RAFT equilibrium constant, K_eq, of a dithiobenzoate‐mediated system [Meiser, W. and Buback M. Macromol. Rapid Commun. 2011 , 32, 1490]. Our value is by four orders of magnitude below K_eq from ab initio calculations for the identical monomer‐free system. Junkers et al. [Macromol. Rapid Commun. 2011 , 32, 1891] claim that our EPR approach would be model dependent and our data could be equally well fitted by assuming slow addition of radicals to the RAFT agent and slow fragmentation of the so‐obtained intermediate radical as well as high cross‐termination rate. By identification of all side products, our EPR‐based method is shown to be model independent and to provide reliable K_eq values, which demonstrate the validity of the intermediate radical termination model.     

Study on nonlinear phase‐separation for PMMA/α‐MSAN blends by dynamic rheological and small angle light scattering measurements

The phase‐separation behavior of poly(methyl methacrylate)/poly(α‐methyl styrene‐co‐acrylonitrile) (PMMA/α‐MSAN) blends upon heating was studied through dynamic rheological measurements and time‐resolved small angle light scattering, as a function of temperatures and heating rates. The spinodal temperatures could be obtained by an examination of the anomalous critical viscoelastic properties in the vicinity of phase‐separation induced by the enhanced concentration fluctuation on the basis of the mean field theory. It is found that the dependence of the critical temperatures determined by dynamic rheological measurements and small angle light scattering on heating rates both deviates obviously from the linearity, even at the very low heating rates. Furthermore, the cloud‐point curves decrease gradually with the decrease of heating rates and present the trend of approaching T_gs of the blends. The nonlinear dependence is in consistence with that extracted from the isothermal phase‐separation behavior as reported in our previous paper. It is suggested that the equilibrium phase‐separation temperature could be hardly established by the linear extrapolating to zero in the plotting of cloud points versus heating rates. © 2006 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 44: 1547–1555, 2006     

Comments on “some evidence against the existence of the liquid-liquid transition. IV. The temperature dependence of shear viscosity”

A formal definition of T_LL as a function of M?ⁿ for polystyrene was prepared with literature T_LL values from torsional braid analysis (TBA), differential scanning calorimetry (DSC), and zero-shear melt viscosity η₀. Data from six authors using anionically prepared PS and blends thereof were involved. The resultant linear least-squares regression line, T_LL(°C) = 148.5 ? 11.487 × 10⁴M? [standard error in T_LL (calculated) 4.056 K, correlation coefficient R² = 0.9534] is considered valid from M?_n = 2000 to the entanglement molecular weight M_c = 35,000. The “best” T_LL values reported by Orbon and Plazek from double Arrhenius plots are well below this line for M?_v = 47,000, 16,400, 3400, and above it for M?_v = 1100. These best T_LL values are artifacts arising from no or insufficient data points above or below T_LL and/or too many data points near T_g. The associated high enthalpies of activation which they report confirm this diagnosis. The fact that these artificial T_LL values tend to disappear when checked by the three-parameter Vogel equation, logη = logA + B exp[(T ? T_∞)^?1], has no relevance to the controversy concerning the existence and meaning of T_LL. The claim by Orbon and Plazek that T_LL values obtained by TBA, DSC, and melt viscosity are all artifacts of the individual methods by which they were obtained is inconsistent with the excellent master plot which they generate. Alternative plotting devices which reveal T_LL > T_g from η₀ vs. T^?1 data, as developed by van Krevelen and Hoftyzer and by Utracki and Simha (not previously considered by either party), are reviewed. A statistical examination of the nature of the Vogel–Fulcher–Tammann–Hesse equation, based on synthetic data, is presented. Evidence for T_LL in atactic polypropylene is offered based on published data by Plazek and Plazek. T_LL is considered to possess both relaxational and quasiequilibrium attributes, just as T_g does.     

“Click polyester”: Synthesis of polyesters containing triazole units in the main chain via safe and rapid “click” chemistry and their properties

Click Cu(I)‐catalyzed polymerizations of diynes that contained ester linkages and diazides were performed to produce polyesters (click polyesters) of large molecular weights [(～1.0–7.0 ) × 10⁴], that contained main‐chain 1,4‐disubstitued triazoles in excellent yields. Incorporation of triazole improved the thermal properties and magnified the even‐odd effect of the methylene chain length. We also found that, by changing the positions of the triazole rings, the thermal properties of the polyesters could be controlled. The use of in situ azidation was a safe reaction, as explosive diazides are not used. In addition, the microwave heating was found to accelerate the polymerization rates. This is the first study that has applied click chemistry for the synthesis of a series of polyesters. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 4207–4218, 2010     

“On–off” switching of dynamically controllable self‐assembly formation of double‐responsive block copolymers with tunable LCSTs

We report here a reversible self‐assembly formation system using block copolymers with thermo‐tunable properties. A series of double‐responsive block copolymers, poly(N‐isopropylacrylamide (NIPAAm))‐block‐poly(NIPAAm‐co‐N‐(isobutoxymethyl)acrylamide (BMAAm)) with two lower critical solution temperatures were synthesized by one‐pot atom transfer radical polymerization via sequential monomer addition. When dissolved in aqueous solution at room temperature, the block copolymers remained unimeric. Upon heating above room temperature, the block copolymers self‐assembled into micellar structures. The micelle formation temperature and the resulting diameter were controlled by varying the BMAAm content. ¹H Nuclear Magnetic Resonance, dynamic light scattering, field‐emission scanning electron microscopy, and fluorescence spectra revealed the presence of a monodisperse nanoassembly, and demonstrated the assembly formation/inversion process was fully reversible. Moreover, a model hydrophobic molecule, pyrene, was successfully loaded into the micelle core by including pyrene in the original polymer solution. Further heating resulted in mesoscopic micelle aggregation and precipitation. This dual micelle and aggregation system will find utility in drug delivery applications as a thermal trigger permits both aqueous loading of hydrophobic drugs and their subsequent release. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010     

Tetsuo Nozoe's “Autograph Books by Chemists 1953–1994”: An Essay

Note from the Editor: It is with special pleasure and a warm feeling of gratitude that I introduce Koji Nakanishi's essay which accompanies the publication of the fifth segment of the Tetsuo Nozoe Autograph Books. This project, “Bonding beyond Borders,” is a symbol of the ever‐increasing connectivity among the many members of the chemistry community. Both Nakanishi and Nozoe wrote autobiographies in the Profiles, Pathways and Dreams series that I edited from 1985 to 1997. I learned from their books how close they were as friends and as colleagues. My interest in publishing the Nozoe Autograph Books goes back many years but was stymied by the difficulty of finding a publisher. This interest was rekindled when, in 2006, Nakanishi told me about – and eventually lent me – a one volume specially printed commemorative collection of the Nozoe Autograph Books. At an ACS National meeting, I rushed to show this book to Eva Wille who could not put it down. This was the entry, the personal connection, that led to the publication of the Nozoe Autograph Books by Wiley‐VCH in The Chemical Record. This is another example of bonding, of enthusiasm and commitment, within our community. Jeffrey I. Seeman Guest Editor, University of Richmond Richmond, Virginia 23173, USA     

“Spontaneous” Ambient Temperature Dehydrocoupling of Aromatic Amine–Boranes

The dehydrocoupling/dehydrogenation behavior of primary arylamine–borane adducts ArNH₂ ? BH₃ ( 3 a – c ; Ar= a : Ph, b : p‐MeOC₆H₄, c : p‐CF₃C₆H₄) has been studied in detail both in solution at ambient temperature as well as in the solid state at ambient or elevated temperatures. The presence of a metal catalyst was found to be unnecessary for the release of H₂. From reactions of 3 a , b in concentrated solutions in THF at 22 °C over 24 h cyclotriborazanes (ArNH‐BH₂)₃ ( 7 a , b ) were isolated as THF adducts, 7 a , b? THF, or solvent‐free 7 a , which could not be obtained via heating of 3 a – c in the melt. The μ‐(anilino)diborane [H₂B(μ‐PhNH)(μ‐H)BH₂] ( 4 a ) was observed in the reaction of 3 a with BH₃?THF and was characterized in situ. The reaction of 3 a with PhNH₂ ( 2 a ) was found to provide a new, convenient method for the preparation of dianilinoborane (PhNH)₂BH ( 5 a ), which has potential generality. This observation, together with further studies of reactions of 4 a , 5 a , and 7 a , b , provided insight into the mechanism of the catalyst‐free ambient temperature dehydrocoupling of 3 a – c in solution. For example, the reaction of 4 a with 5 a yields 6 a and 7 a . It was found that borazines (ArN‐BH)₃ ( 6 a – c ) are not simply formed via dehydrogenation of cyclotriborazanes 7 a – c in solution. The transformation of 7 a to 6 a is slowly induced by 5 a and proceeds via regeneration of 3 a . The adducts 3 a – c also underwent rapid dehydrocoupling in the solid state at elevated temperatures and even very slowly at ambient temperature. From aniline–borane derivative 3 c , the linear iminoborane oligomer (p‐CF₃C₆H₄)N[BH‐NH(p‐CF₃C₆H₄)]₂ ( 11 ) was obtained. The single‐crystal X‐ray structures of 3 a – c , 5 a , 7 a , 7 b? THF, and 11 are discussed.     

Topological “interfacial” polymer chemistry: Dependency of polymer “shape” on surface morphology and stability of layer structures when heating organized molecular films of cyclic and linear block copolymers of n‐butyl acrylate‐ethylene oxide

The “topological polymer chemistry” of amphiphilic linear and cyclic block copolymers at an air/water interface was investigated. A cyclic copolymer and two linear copolymers (AB‐type diblock and ABA‐type triblock copolymers) synthesized from the same monomers were used in this study. Relatively stable monolayers of these three copolymers were observed to form at an air/water interface. Similar condensed‐phase temperature‐dependent behaviors were observed in surface pressure–area isotherms for these three monolayers. Molecular orientations at the air/water interface for the two linear block copolymers were similar to that of the cyclic block copolymer. Atomic force microscopic observations of transferred films for the three polymer types revealed the formation of monolayers with very similar morphologies at the mesoscopic scale at room temperature and constant compression speed. ABA‐type triblock linear copolymers adopted a fiber‐like surface morphology via two‐dimensional crystallization at low compression speeds. In contrast, the cyclic block copolymer formed a shapeless domain. Temperature‐controlled out‐of‐plane X‐ray diffraction (XRD) analysis of Langmuir–Blodgett (LB) films fabricated from both amphiphilic linear and cyclic block copolymers was performed to estimate the layer regularity at higher temperatures. Excellent heat‐resistant properties of organized molecular films created from the cyclic copolymer were confirmed. Both copolymer types showed clear diffraction peaks at room temperature, indicating the formation of highly ordered layer structures. However, the layer structures of the linear copolymers gradually disordered when heated. Conversely, the regularity of cyclic copolymer LB multilayers did not change with heating up to 50 °C. Higher‐order reflections (d₀₀₂, d₀₀₃) in the XRD patterns were also unchanged, indicative of a highly ordered structure. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 486–498     

“On‐Water,” Microwave‐Assisted,Pd‐Catalyzed Synthesis of Indoles from Imines and o‐Difunctionalized Arenes

Regioselectively substituted indoles are prepared by a Pd‐catalyzed C? C/C? N bond‐forming sequence from imines and o‐dihaloarenes or o‐haloarene sulfonates. The heterogeneous reaction as a suspension in water and under microwave heating offers important advantages in comparison with the conventional reaction in an organic solvent, among them, operational simplicity, the employment of KOH solutions instead of alkoxides, and a dramatic reduction of reaction times.     

Scrutinizing “Invisible” astatine: A challenge for modern density functionals

The main‐group 6p elements did not receive much attention in the development of recent density functionals. In many cases it is still difficult to choose among the modern ones a relevant functional for various applications. Here, we illustrate the case of astatine species (At, Z = 85) and we report the first, and quite complete, benchmark study on several properties concerning such species. Insights on geometries, transition energies and thermodynamic properties of a set of 19 astatine species, for which reference experimental or theoretical data has been reported, are obtained with relativistic (two‐component) density functional theory calculations. An extensive set of widely used functionals is employed. The hybrid meta‐generalized gradient approximation (meta‐GGA) PW6B95 functional is overall the best choice. It is worth noting that the range‐separated HSE06 functional as well as the old and very popular B3LYP and PBE0 hybrid‐GGAs appear to perform quite well too. Moreover, we found that astatine chemistry in solution can accurately be predicted using implicit solvent models, provided that specific parameters are used to build At cavities. © 2016 Wiley Periodicals, Inc.     

Identification of autoxidation oligomers of flavan‐3‐ols in model solutions by HPLC‐MS/MS

Autoxidation of flavan‐3‐ols was carried out in aqueous/methanol model solutions under mildly acidic conditions (pH 6.0), and these autoxidation products were analyzed by using high performance liquid chromatography (HPLC) coupled with tandem mass spectrometry (MS/MS). The results showed that (+)‐catechins and (?)‐epicatechins generated autoxidation reaction with each other to form a series of oligomers that had the same [M ? H]^? molecular ions (MS¹) as those of natural procyanidins, but had completely different fragment ions (MS²). According to MS/MS analysis, the major fragments of these oligomers were derived not only from the retro‐Diels–Alder (RDA) dissociations on the C‐rings of the flavan‐3‐ol units, but also from the quinone‐methide (QM) cleavage of the interflavan linkages (IFL), and thus they were identified as B‐type dehydrodicatechins, B‐type dehydrotricatechins and A‐type dehydrotricatechins, respectively. The potential structures of their [M ? H]^? molecular ions and partial fragment ions were deduced on the basis of the MS/MS characterization and the oxidation of flavan‐3‐ols in previous reports. Some specific fragment ions were found to be very useful for identifying the autoxidation oligomers (the B‐type dehydrodicatechins at m/z 393, the B‐type dehydrotricatechins at m/z 681 and the A‐type dehydrotricatechins at m/z 725). Copyright © 2008 John Wiley & Sons, Ltd.     

Comment on “Symbolic Calculation of Two‐Center Overlap Integrals Over Slater‐type Orbitals”

Published by Gümü?. and Özdo?an formulas for the evaluation of two‐center overlap integrals (Gümü?, S.; Özdo?an, T. J. Chin. Chem. Soc. 2004, 51, 243) are critically analyzed. It is demonstrated that the formulas presented in this work are not original and they can easily be derived from the relationships contained in our papers (Guseinov, I. I. J. Phys. B 1970 , 3, 1399; Phys. Rev. A 1985 , 32, 1864; J. Mol Struct. (Theochem) 1995 , 336, 17) by changing the summation indices and application of a simple algebra. It should be noted that the symbolic results of overlap integrals between different combinations of quantum numbers given in Table 1 and 2 can also be obtained from the use of established in above mentioned our papers general formulas or presented in the literature relations for overlap integrals in terms of the products of molecular auxiliary functions A_n(p) and B_n(pt) (see, e.g., Lofthus, A. Mol. Phys. 1962 , 5, 105).     

A Perylene Bisimide Cyclophane as a “Turn‐On” and “Turn‐Off” Fluorescence Probe

A rigid, covalently linked perylene‐3,4:9,10‐tetracarboxylic acid bisimide (PBI) cyclophane was synthesized by imidization of a bay‐substituted perylene bisanhydride with p‐xylylenediamine. The interchromophoric distance of approximately 6.5 Å establishes an ideal rigid cavity for the encapsulation of large aromatic compounds such as perylene and anthracene with binding constants up to 4.6×10⁴ M ^?1 (in CHCl₃). For electron‐poor guest molecules, the complexation process is accompanied by a significantly increased fluorescence, whereas the emission intensity is dramatically quenched by more electron‐rich guests because of the formation of charge‐transfer complexes. Furthermore, the influence of the PBI core twist on the binding constant results in a remarkable selectivity towards more flexible aromatic guest molecules.     

“Experimentation and modeling for the apparent elongation viscosity of polymer melts with the White–Metzner model”

The measurement of the apparent elongation viscosity (η_e) of several polyolefin melts was conducted in this study by using the isothermal fiber‐spinning method. The White–Metzner (W–M) model was used to analyze the spinning flow of the polymer melts and, thus, the elongation viscosity was predicted at elongation strain rates ranging from 0 to approximately 5 s^?1. The values of the model parameters required in the W–M model were obtained by curve fitting the experimental data obtained from the shear measurements. The elongation viscosity predicted using the W–M model was in good agreement with the experimental results of fiber spinning. In addition, η_e could also be estimated directly from the measured shear viscosity (η_S) with a formulation using the W–M model; the subsequently obtained elongation viscosity and Trouton ratio (T_R) were reasonable within a wide range of strain rates. Based on the experimental and theoretical results, the polyolefin with a high molecular weight was observed to have high elongation viscosity, and the polymer with a broad molecular weight distribution also possessed high η_e. The T_R value of the commercial polypropylene (PP‐1040) began to increase from 3 at a deformation rate of 0.1 s^?1 and grew up asymptotically to 10, whereas the T_R of high‐density polyethylene (HDPE‐606) remained nearly at 3 within the entire range of strain rates. Copyright © 2014 John Wiley & Sons, Ltd.     

Ligand fishing of anti‐neurodegenerative components from Lonicera japonica using magnetic nanoparticles immobilised with monoamine oxidase B

In this work, monoamine oxidase B was immobilised onto magnetic nanoparticles to prepare a new type of affinity solid‐phase extraction adsorbent, which was used to extract the possible anti‐neurodegenerative components from the Lonicera japonica flower extracts. Coupled with high‐performance liquid chromatography with mass spectrometry, two monoamine oxidase B ligands were fished‐out and identified as isochlorogenic acid A and isochlorogenic acid C, which were found to be inhibitors of the enzyme for the first time, with similar half maximal inhibitory concentration values of 29.05 ± 0.49 and 29.77 ± 1.03 μM, respectively. Furthermore, equilibrium‐dialysis dissociation assay of enzyme‐inhibitor complex showed that both compounds have reversible binding patterns to monoamine oxidase B, and kinetic analysis demonstrated that they were mixed‐type inhibitors for monoamine oxidase B, with K_i and K_is values of 9.55 and 37.24 μM for isochlorogenic acid A, 9.53 and 35.50 μM for isochlorogenic acid C, respectively. The results indicated that isochlorogenic acid A and isochlorogenic acid C were the major active components responsible for the anti‐degenerative activity of the flowers of L. japonica, while magnetic nanoparticles immobilised monoamine oxidase B could serve as an efficient solid‐phase extraction adsorbent to specifically extract monoamine oxidase B inhibitors from complex herbal extracts.     

Synthesis of anionic carbosilane dendrimers via “click chemistry” and their antiviral properties against HIV

The synthesis and characterization of four families of anionic carbosilane dendrimers bearing carboxylate, phosphonate, naphthylsulfonate, and sulfate terminal groups prepared by cycloaddition of azide–alkyne catalyzed by copper (CuAAC) are presented here. For the preparation of these anionic carbosilane dendrimers, two strategies starting from azide‐terminated carbosilane dendrimers were followed: (i) click coupling of neutral alkynes followed by derivatization into anionic moieties or (ii) click coupling of anionic alkynes. Both strategies require different reaction conditions in order to accommodate the different substrate polarities. These anionic dendrimers, in general, do not present cell toxicity in vitro until concentration up to 20 µM. Therefore, they can be used in inhibition experiments in concentrations below this limit. We have observed that dendrimers bearing phosphonate groups possess poor anti‐HIV capabilities in vitro in PBMCs, while carboxylate dendrimers can reduce HIV infection levels moderately. On the other hand, sulfate and naphthylsulfonate dendrimers are powerful anti‐HIV agents and their antiviral activity is generation and concentration dependent. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2014 , 52, 1099–1112     

Evolution of the “knitting pattern” morphology in ABC triblock copolymers

A new morphology of ternary ABC triblock copolymers is presented which results from the asymmetric interaction between a centre block (poly(ethylene-co-butene)) to different end blocks (polystyrene and poly(methyl methacrylate)). This morphology with the appearance of a “knitting pattern” can be described as an intermediate of a morphology of A, B and C lamellae and a morphology of A and C lamellae with B cylinders at the A/C interface.     

Self‐heating and conduction of an acetylene carbon black filled high‐density polyethylene composite at the electric–thermal equilibrium state

The electric self‐heating and conduction behaviors of a high‐density polyethylene/carbon black composite at the electric–thermal equilibrium state are studied. An equation describing the current density/electric‐field strength (J–E) characteristic is derived on the basis of an equation proposed for the self‐heating temperature as a function of the field strength. The conduction is related to the electronic tunneling and the resistor breakdown due to self‐heating that dominate the nonlinear J–E characteristic below and above a critical field strength corresponding to the J maximum, respectively. The influences of the initial structure of the percolation network and the physical state of the matrix on the conduction are also discussed on the basis of scaling arguments of the self‐heating and the nonlinear J–E characteristic with respect to the initial resistivity at various ambient temperatures from 19 to 120 °C. © 2005 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 43: 2484–2492, 2005     

Dynamic birefringence of oligostyrene: A symptom of “polymeric” mode

The dynamic birefringence and the dynamic viscoelasticity of an oligostyrene, A1000, whose molecular weight (M_w = 1050) was comparable to the Kuhn segment size, M_K, were examined near and above the glass‐transition temperature in order to characterize polymeric features of very short chains with M ∼ M_K. The complex shear modulus, G*(ω), was similar to that for supercooled liquids: No polymeric modes such as the Rouse mode were detected at low frequencies of viscoelastic spectrum. On the other hand, the strain‐optical coefficient was found to be negative in the terminal flow zone and positive in the glassy zone. Because the negative birefringence of polystyrene is originated by polymeric modes associated with chain orientation, the present results indicate that polymeric modes exist and become dominant for birefringence in the terminal flow. The data were analyzed using a modified stress‐optical rule: The modulus and the strain‐optical ratio were separated into polymeric (rubbery) and glassy components. The total modulus, G*(ω), was mostly due to the glassy component, G_G*(ω), resulting in the positive birefringence. G_G*(ω) for A1000 agreed with that for high M polystyrenes when compared at a comparable reduced frequency scale. The polymeric component, G_R*(ω), giving rise to the negative birefringence was lower than G_G*(ω) over the whole frequency range but its contribution to the birefringence exceeded that of the glassy component at low frequencies because of the larger optical anisotropy and longer characteristic relaxation time of the former. The limiting modulus of G_R* at high frequencies was about 3 times lower than that for high M polystyrenes, indicating that the main‐chain orientation of the oligostyrene on instantaneous deformation was reduced compared with that of high M polystyrenes. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 954–964, 2000