THz spectroscopic investigation of 2,4-dinitrotoluene

We have investigated the terahertz (THz) spectrum of 2,4-DNT by using Fourier transform infrared spectroscopy in the 0.2–19.5 THz region. We also examined low-frequency intermolecular or phonon modes between 0.2 and 1.8 THz via THz time-domain spectroscopy. The extracted absorption coefficient and refractive index of an intermolecular band at 1.08 THz are 110 cm⁻¹ and 1.67, respectively. Density functional theory (DFT) was applied to obtain structure and vibrational frequencies of 2,4-DNT. The calculated results are in agreement with the experimental data. Observed vibrational frequencies have been interpreted using DFT. Two intermolecular or phonon modes were identified at 1.08 and 2.52 THz.     

Theoretical Studies on the Intramolecular Electron Transfer in Some Aromatic Systems

1 INTRODUCTION As early as forty years ago, Lippert et al. found that there is a double-fluorescence phenomenon of the compound 4-(N,N-dimethylamino)benzonitrile (4DMAB-CN)[1]. Subsequently, similar phenomenon was observed in the same kind of compounds[2～5]. Two bands exist in these fluorescence spectra, repre- senting respectively that the minor and macro axis polarizations are hardly and easily affected by the polar solvent. This phenomenon can be explained by the intramolecular e…     

Effects of Nitrobenzenes on DNA Damage in Germ Cells of Rats

IntroductionSince nitroaromatic compounds constitute a classof industrial chemicals that are present in China andprobably in many other industrialized countries as well,it is necessary to gain insight into their potential hazardto organisms.In recent year…     

Metabolism of 2,4-dinitrotoluene and 2,6-dinitrotoluene, and their dinitrobenzyl alcohols and dinitrobenzaldehydes by Wistar and Sprague-Dawley rat liver microsomal and cytosol fractions

The metabolism of 2,4-dinitrotoluene (2,4-DNT), 2,4-dinitrobenzyl alcohol (2,4-DNB), 2,4-dinitrobenzaldehyde (2,4-DNBAl), 2,6-DNT, 2,6-DNB and 2,6-DNBAl in the microsomal and cytosol fractions prepared from unfortified male Wistar and male Sprague-Dawley (S.D.) rat livers was investigated. Data obtained by high-performance liquid chromatography (HPLC) indicated that the products of dinitrotoluenes (2,4-DNT and 2,6-DNT), dinitrobenzyl alcohols (2,4-DNB and 2,6-DNB), and dinitrobenzaldehydes (2,4-DNBAl and 2,6-DNBAl) in the microsomal and cytosol preparations containing nicotinamide adenine dinucleotide phosphate (NAD(P] and reduced NAD(P)(NAD(P)H) were dinitrobenzyl alcohols (2,4-DNB and 2,6-DNB), dinitrobenzaldehydes (2,4-DNBAl and 2,6-DNBAl), and dinitrobenzoic acids (2,4-DNBA and 2,6-DNBA), and dinitrobenzyl alcohols (2,4-DNB and 2,6-DNB), respectively. From these results, it was concluded that the dinitrobenzaldehydes (2,4-DNBAl and 2,6-DNBAl) were intermediates in the oxidations of dinitrobenzyl alchols (2,4-DNB and 2,6-DNB) to dinitrobenzoic acids (2,4-DNBA and 2,6-DNBA), and that the oxidations of dinitrobenzyl alcohols (2,4-DNB and 2,6-DNB) to dinitrobenzaldehydes (2,4-DNBAl and 2,6-DNBAl) and the reductions of dinitrobenzaldehydes to dinitrobenzyl alcohols (2,4-DNB and 2,6-DNB) were reversible.(ABSTRACT TRUNCATED AT 250 WORDS)     

Development of a sensitive surface plasmon resonance immunosensor for detection of 2,4-dinitrotoluene with a novel oligo (ethylene glycol)-based sensor surface

A surface plasmon resonance (SPR) immunosensor for detection of 2,4-dinitrotoluene (2,4-DNT), which is a signature compound of 2,4,6-trinitrotoluene-related explosives, was developed by using a novel oligo (ethylene glycol) (OEG)-based sensor surface. A rabbit polyclonal antibody against 2,4-DNT (anti-DNPh-KLH-400 antibody) was prepared, and the avidity for 2,4-DNT and recognition capability were investigated by indirect competitive ELISA. The sensor surface was fabricated by immobilizing a 2,4-DNT analog onto an OEG-based self-assembled monolayer formed on a gold surface via an OEG linker. The fabricated surface was characterized by Fourier-transform infrared-refractive absorption spectrometry (FTIR-RAS). The immunosensing of 2,4-DNT is based on the indirect competitive principle, in which the immunoreaction between the anti-DNPh-KLH-400 antibody and 2,4-DNT on the sensor surface was inhibited in the presence of free 2,4-DNT in solution. The limit of detection for the immunosensor, calculated as three times the standard deviation of a blank value, was 20 pg mL⁻¹, and the linear dynamic range was found to be between 1 and 100 ng mL⁻¹. Additionally, the fabricated OEG-based surface effectively prevented non-specific adsorption of proteins, and the specific response to anti-DNPh-KLH-400 antibody was maintained for more than 30 measurement cycles.     

Ab initio studies on the vibrational spectra and conformational isomerism of 2,4-dimethyl-1,3-pentadiene

Ab initio was used to study the structure of various conformational isomers and their vibrational spectra of 2,4-dimethyl-1,3-pentadiene (2,4-PD) in detail. Two stable conformations, s-trans and s-cis, were found in which s-trans is more stable. The geometry of stable conformations and charge distributions were studied, and the effect of different basis sets on geometry optimization is discussed. The results of complete optimization indicate that molecular skeleton is nearly in a plane, its largest deviation is only 0.3 degrees. Therefore, it is reasonable and available to hypothesis that the molecule has Cs symmetry. The thermal dynamics conformations were calculated and compared with experimental values. DeltaH(o) between two conformations of 2,4-PD measured from experiment is 4.36 kJ/mol, deltaS(o) is 2.56 J/mol K., calculated results are slightly different from experimental ones. Vibrational frequencies of 2,4-PD conformers have been studied by ab initio molecular orbital calculations using different basis set. The calculated vibrational frequencies are analyzed and compared with the experimental spectra.     

DFT and ab initio study of structure of dyes derived from 2-hydroxy and 2,4-dihydroxy benzoic acids

We present a detailed analysis of the structural, infrared spectra and visible spectra of a series of azo dyes preparation of salicylic acid and 2,4-dihydroxy benzoic acid derivatives as the coupling component. The preparation of these azo dyes with salicylic acid and 2,4-dihydroxy benzoic acid derivatives (salicylic acid, methyl salicylate, ethyl salicylate, butyl salicylate, methyl 2,4-dihydroxy benzoate, ethyl 2,4-dihydroxy benzoate, salicylaldehyde, salicylamide, 2,4-dihydroxy benzamide, salicylaldoxime) have been investigated theoretically by performing HF and DFT levels of theory using the standard 6-31G* basis set. The optimized geometries and calculated vibrational frequencies are evaluated via comparison with experimental values. The vibrational spectral data obtained from solid phase FT-IR spectra are assigned modes based on the results of the theoretical calculations. The observed spectra are found to be in good agreement with the calculations.     

Electronic g-tensors of solvated molecules using the polarizable continuum model

We present the implementation of density functional response theory combined with the polarizable continuum model (PCM), enabling first principles calculations of molecular g-tensors of solvated molecules. The calculated g-tensor shifts are compared with experimental g-tensor shifts obtained from electron paramagnetic resonance spectra for a few solvated species. The results indicate qualitative agreement between the calculations and the experimental data for aprotic solvents, whereas PCM fails to reproduce the electronic g-tensor behavior for protic solvents. This failure of PCM for protic solvents can be resolved by including into the model those solvent molecules which are involved in hydrogen bonding with the solute. The results for the protic solvents show that the explicit inclusion of the solvent molecules of the first solvation sphere is not sufficient in order to reproduce the behavior of the electronic g-tensor in protic solvents, and that better agreement with experimental data can be obtained by including the long-range electrostatic effects accounted for by the PCM approach on top of the explicit hydrogen-bonded complexes.     

Gas phase detection of explosives such as 2,4,6-trinitrotoluene by molecularly imprinted polymers

Fast, reliable and inexpensive analytical techniques for trace detection of explosive components are in high demand. Our approach is to develop specific sensor coating materials based on molecularly imprinted polymers (MIPs). Despite the known inhibition of radical polymerisations by nitro groups and the known shrinkage of the polymer lattice during/after drying we were able to synthesize particulate MIPs by suspension polymerisation as well as thin MIP coatings by direct surface polymerisation on quartz crystal microbalances (QCM). The best method to purify the porous beads was Soxhlet extraction followed by supercritical carbon dioxide extraction (SFE with sc-CO₂) at mild conditions (150 bar, 50 °C). At least a removal of >99.7% of the template was achieved. Performance tests of TNT imprinted polymer beads showed that acrylamide (AA) and more pronounced also methacrylic acid (MAA) possessed an enhanced adsorption tendency for gaseous TNT. An adsorption of 2,4-DNT, dinitrotoluene, by these MIPs was not detected. Using 2,4-DNT as template and methacrylamide, MAAM, a positive imprint effect for gaseous 2,4-DNT was achieved with no measurable cross-sensitivity for 2,4,6-TNT.The thin MIP coatings directly synthesized on the QCMs showed thicknesses of 20 to up to 500 nm. Preliminary screening experiments were performed for five different monomers and three different solvents (acetonitrile, chloroform and dimethylformamide). Best adsorption properties for TNT vapour until now showed a PAA-MIP synthesized with chloroform. Direct measurements of the mass attachment, respectively frequency decrease of the coated QCMs during vapour treatment showed a TNT-uptake of about 150 pg per μg MIP per hour. Results look worthy for further studies.     

Vibrational analysis of free and hydrogen bonded complexes of nicotinamide and picolinamide

Harmonic and anharmonic vibrations of free nicotinamide (NIA) and picolinamide (PIA) molecules together with their hydrogen bonded complexes H₂O–NIA and H₂O–PIA have been studied by means of density functional method. The calculation results of the vibrational spectra of free molecules have been investigated and are compared to the available experimental spectra. The vibrational wavenumbers of both molecules have also been calculated by polarizable continuum model (PCM) that represents the solvent as a polarizable continuum and places the solute in a cavity within the solvent (water is chosen as the solvent in this study). The results of PCM calculations and the H₂O–NIA, H₂O–PIA complexes, are used to investigate the H-bonding interactions of both molecules with the water molecule. The harmonic wavenumbers have been scaled by proper factors obtained by comparing the observed versus calculated wavenumbers and it is shown that anharmonic corrections on the vibrational spectra provided a better agreement between the observed and calculated wavenumbers compared to the results obtained by scaling factor method.     

Ab initio studies of solvent effect on molecular conformation and vibrational spectra of diacetamide

The conformational equilibria and vibrational spectra of diacetamide have been investigated by ab initio molecular orbital studies using the basis sets 6-31g(d,p) and 6-31++g(d,p) at Hartree-Fock and MP2 levels. The vibrational spectra of diacetamide have been satisfactorily interpreted taking into consideration the agreement between the calculated harmonic vibrational frequencies, infrared and Raman band intensities and shifts in deuterated molecules with those observed. The solvent effects were investigated by the self-consistent reaction field (SCRF) theory. The effect of solvent on the conformational equilibria and vibrational spectra is discussed. The calculated changes in the geometry and vibrational spectra on going from the gas phase to the solvent medium are in accord with the increasing weight of the dipolar resonance structure of the amide group in more polar solvents.     

2,4-二硝基甲苯热解自催化特性鉴别及其热解动力学

为研究2,4-二硝基甲苯(2,4-DNT)的热危险性及其分解反应的特征, 利用差示扫描量热仪(DSC)对该物质进行了动态扫描测试, 得到其起始分解温度T₀范围为272.4-303.5℃, 分解热ΔH_d约为2.22 kJ·g^-1. 在此基础上, 采用瑞士安全技术与保障研究所提出的快速鉴别法(瑞士方法)及数值模拟技术, 对其分解反应的特性参数进行了推算, 结果表明其分解具有自催化性. 采用Malek法分析了该物质分解反应的最概然机理函数并得出了相关动力学参数, 表明其分解具有自催化性且符合Sestak-Berggren 双参数自催化模型(SB模型), 这与瑞士方法所得结论一致. 采用等温DSC测试获得了该物质的‘钟形’热解曲线, 从而验证了两种方法的结论.     

Methanol in its own gravy. A PCM study for simulation of vibrational spectra

For studying both hydrogen bond and dipole-dipole interactions between methanol molecules (self-association) the geometry of clusters of increasing numbers of methanol molecules (n = 1,2,3) were optimized and also their vibrational frequencies were calculated with quantum chemical methods. Beside these B3LYP/6-311G** calculations, PCM calculations were also done for all systems with PCM at the same quantum chemical method and basis set, for considering the effect of the liquid continuum on the cluster properties. Comparing the results, the measured and calculated infrared spectra are in good accordance.     

Structural and spectral properties of 3-substitutedphenyl-1,5-diphenylformazans: A quantum chemical study

The structural and optical properties of 3-substitutedphenyl-1,5-diphenylformazans are studied by quantum chemical methods. The density functional theory (DFT) is employed to optimize the ground state geometries of formazans substituted with different electron donating and withdrawing groups in both gas and solvent phases. The absorption spectra of formazan derivatives are calculated using time dependent density functional theory (TD-DFT). The polarizable continuum model (PCM) calculations of 3-substitutedphenyl-1,5-diphenylformazans are performed for bulk solvent effects. The geometrical parameters, vibrational frequencies, and relative stabilities of isomers of 3-substitutedphenyl-1,5-diphenylformazans are studied. The results obtained by TD-DFT calculations reveal that the substitution of electron withdrawing and donating substituents affects the absorption spectra of 3-substitutedphenyl-1,5-diphenylformazans. The calculated maximum absorption wavelengths (λ_max) are highly consistent with the experimental values as found from UV-vis spectra.     

A quantum mechanical study of bioactive 3-chloro-2,5-dihydroxybenzyl alcohol through substitutions

Electronic structures, vibrational and ionization spectra of 3-chloro-2,5-dihydroxybenzyl alcohol (CHBA), a novel bioactive benzene derivative from marine fungi, are presented in this study using quantum mechanical methods such as density functional theory and outer valence Green function method. A number of related benzene derivatives such as chlorobenzene, 3-chlorobenzyl alcohol, hydroquinone and chlorohydroquinone are also studied, in order to assist our understanding of the structure, properties and interactions of CHBA. Vibrational spectra such as infrared (IR) and Raman spectra reveal signatures of the functional group substitutions and their hydrogen bond interactions in CHBA. Solvent effects on the IR spectra of CHBA with polar and non-polar solvents are simulated using the polarizable continuum model (PCM) and cause redshifts of some of the IR spectral frequencies with respect to the gas phase values at both ends of the 400?C4,000?cm^?1 region. The inner-shell ionization spectra, in particular the C?CK spectra of the benzene derivatives, reveal detailed chemical environmental changes of the carbon and oxygen atoms due to the substitutions. The valence ionization energies of the highest occupied molecular orbital (HOMO) and the 3rd HOMO, (HOMO-2) of the benzene derivatives respond significantly to the substitutions, whereas the charge distributions of the HOMO and 2nd HOMO (HOMO-1) do not change significantly from their benzene counterparts. As a result, the 3rd HOMO changes significantly in both ionization energies and the charge distributions, which can serve as a signature of the substitutions among the benzene derivatives.     

Vibrational markers of structural distortion in adenine nucleobases upon DNA damage

Oxidation is one of the common causes of chemical damage of DNA. Among the oxidized nucleobases in DNA, 8-oxoadenine (8-oxoA) and 4,6-diamino-5-formamidoadenine (FaPyA) are two of the most commonly found lesions. Relatively little information has been published so far on these lesions compared to the more mutagenic modified purines like 8-oxoguanine. In this study, we investigate the structure and vibrational spectra of these two lesions using Density Functional Theory relative to the parent compound adenine. In addition, we have incorporated a solvent environment through the Polarizable Continuum Model (PCM), as well as explicit solvent model calculations to test for the best prediction of the vibrational wavenumbers of adenine. We find that, while the explicit solvent model predicts the structure of the lesions better with respect to published X-ray diffraction structures, they do not reproduce the vibrational wavenumbers as accurately. In comparison, PCM predicts the wavenumbers better with less of the typical overestimation seen in the absence of solvent effects. Intriguingly, uniform linear scaling of the 'gas phase' calculations provides the best agreement with published experimental spectra. Finally, we demonstrate that 8-oxoA and FaPyA have unique spectral features compared to adenine by characterizing the differences in their normal modes. We propose the use of their distinct spectra as site-specific Raman probes of systems such as base-specific local probing of a DNA strand and DNA-enzyme active site interactions where the substrate can be used as an in situ probe.     

DFT and TD‐DFT investigation of IR and UV spectra of solvated molecules: Comparison of two SCRF continuum models

We report the calculation of liquid‐phase infrared (IR) and ultraviolet (UV) spectra in the framework of the solute's response to the reaction field of several solvents. In particular, we compare these two properties for the multipolar expansion model developed in the Nancy continuum model (NCM) and the polarized continuum model (PCM) scheme developed in Pise and Naples. All calculations are carried out at the (TD‐)DFT/6–311G(2d,2p) level of theory. The cavity size used for modeling the solute effects on the IR and UV spectra are examined. To calibrate the solute cavity size, we have investigated the IR spectra of coumarin and of a set of 14 additional solutes of different size and polarity in several dielectrical surroundings. It turns out that: (i) PCM and NCM present an identical behavior when a common cavity is used to calibrate the models; and (ii) for both NCM and PCM models, the IR spectra are highly sensitive to the solute and solvent polarity. The UV/VIS investigation of coumarin derivatives demonstrates that both models provide close estimates of λ_max independent of the solute cavity size. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Insight into the solvent effect on the structure,IR-spectrum,and hyperpolarizability of CpMe<Subscript>2</Subscript>Ta(benzyne), a mononuclear Tantalum–benzyne complex

In this investigation, quantum chemical calculations using MPW1PW91 method were applied to analyze of the solvent effect on the structural, vibrational analysis, thermochemical parameters and first hyperpolarizability for CpMe₂Ta(benzyne) complex. The solvent effects on the structure and properties were examined by the self-consistent reaction field theory (SCRF) based on Polarizable Continuum Model (PCM). Good correlations exist between these parameters and dielectric constants of solvents. The wavenumbers of the IR-active symmetric stretching vibrations of Ta-Me in different solvents were correlated with the Kirkwood–Bauer–Magat equation (KBM). In addition, Monte Carlo simulations using standard procedure of Metropolis sampling were applied to investigate of the solvation of CpMe₂Ta(benzyne) complex. In addition, the bonding interaction between the CpTaMe₂ and benzyne fragments was analyzed by means of the energy decomposition analysis (EDA).     

Investigation of different alcoholic modifiers for the separation and determination of two isomers of dinitrotoluene (2,4 and 2,6) by ion mobility spectrometry

Some alcoholic modifier gases were applied to separate isomer peaks in ion mobility spectrometry (IMS). Different mechanisms have been investigated on the separation, such as collision cross-section and analyte-modifier cluster formation. In this regard, some parameters that affected the cluster formation, such as dipole moment, electron affinity, the position of functional groups, and the modifier structure, were evaluated. On the other hand, some effective experimental parameters, including cell temperature and the flow rates of the drift and modifier gases, were also optimized. The combination of dispersive liquid–liquid microextraction with thin-film evaporation (DLLME-TFE) was used as a sample preparation method for the extraction of 2,4-dinitrotoluene (2,4-DNT) and 2,6-dinitrotoluene (2,6-DNT) isomers (as the target analytes). Isobutanol was selected as the alcoholic modifier to separate the ion molecular peaks of these isomers. The limit of detection and the limit of quantification obtained were 15 and 50 μg L⁻¹, and the linear dynamic range (50–700 μg L⁻¹) with coefficient of determination of 0.9941 and 0.9914 were obtained for 2,4-DNT and 2,6-DNT, respectively. The intra- and inter-day relative standard deviations were obtained between 3% and 5%. For validation of the method, determination of the isomers was accomplished for a red wastewater field sample, resulting in relative recovery values of about 96%.     

Experimental, theoretical calculations of the vibrational spectra and conformational analysis of 2,4-di-tert-butylphenol

In the present work, we reported a combined experimental and theoretical study on conformational stability, molecular structure and vibrational spectra of 2,4-di-tert-butylphenol (2,4-DTBP). The FT-IR (400-4000cm(-1)) and FT-Raman spectra (50-3500cm(-1)) of 2,4-DTBP were recorded. The molecular geometry, harmonic vibrational frequencies and bonding features of 2,4-DTBP in the ground-state have been calculated by using the density functional BLYP/B3LYP methods. The energy calculated by time-dependent density functional theory (TD-DFT) result complements with the experimental findings. The calculated highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energies show that charge transfer occurs within the molecule. Finally the calculation results were compared with measured infrared and Raman spectra of the title compound which showed good agreement with observed spectra.