On the synthesis of pyrinodemin A. Part 1: The location of the olefin

The elucidation of the structure of the cytotoxic marine sponge alkaloid pyrinodemin A by synthesis is described. Based on the ¹³C NMR spectra of three double bond positional isomers and the natural product, it is concluded the C14′-C15′ isomer best represents the true structure of pyrinodemin A. In addition, the structural assignment of pyrinodemin C is evaluated.     

Asymmetric synthesis of double bond isomers of the structure proposed for pyrinodemin A and indication of its structural revision

Asymmetric synthesis of double bond isomers (+)-2 (delta(15',16')) and (+)-3 (delta(14',15')) of the structure (1) (delta(16',17')) proposed for pyrinodemin A, a cytotoxic bis-pyridine alkaloid with a unique cis-cyclopent[c]isoxazolidine moiety from a marine sponge, has been accomplished. Pyrinodemin A was indicated to be a 1:1 racemic mixture of 2 from comparison of C(18 )and chiral HPLC analysis for pyrinodemin A and the synthetic compounds as well as ESIMS data of oxidative degradation products of pyrinodemin A.     

A novel formula for location of double bond in alkenyl acetates and alcohols based on mass spectral data of dimethyl disulfide derivatives

A new formula was presented for locating double bond position in dodecenols, tetrade-cenols, hexadecenols and their acetates, based on mass spectral data of dimethyl disulfide derivatives. In this procedure, molecular ion and base peak ion were utilized as characteristic parameters to identify the positional isomers. The method was tested with mass spectra of 25 dimethyl disulflde derivatives of mono-unsaturated acetates and alcohols, and the original double-bond position in each isomer was located unambiguously.     

Total synthesis of (±)-marmin and related coumarin monoterpenes

(±)-Marmin (1a) and its cis isomer (1b) have been synthesized from 7-neranyloxycoumarin (10a) and 7-neryloxycoumarin (10b), respectively, by way of the corresponding terminal epoxides 2a and 2a. The geometrically and positionally specific route confirms the structure and, in particular, the irons double bond geometry of natural (+)-marmin and epoxide (+)-2a. The latter, upon reaction with stannic chloride in benzene gives rise to the naturally occurring cyclic monoterpene coumarin types 3 and 6 as well as the previously unknown double-bond isomer 13.     

Ariakemicins A and B, novel polyketide-peptide antibiotics from a marine gliding bacterium of the genus Rapidithrix

Ariakemicins A (1) and B (2), unusual linear hybrid polyketide-nonribosomal peptide antibiotics, were discovered from the fermentation extract of the marine gliding bacterium Rapidithrix sp. These metabolites were positional isomers with regard to a double bond and chromatographically inseparable, rendering the structure study on a mixture basis. The ariakemicins were composed of threonine, two omega-amino-(omega-3)-methyl carboxylic acids with diene or triene units, and delta-isovanilloylbutyric acid. The antibiotics selectively inhibited the growth of Gram-positive bacteria.     

A hantzsch 1,4-dihydropyridine synthesis producing an unusual by-product

The reaction of 2-acetyl-1-(2-chlorophenyl)-6-methylhept-1-en-3-one ( 2 ) with ethyl 3-aminocrotonate gave an unusual isomer of a 1,4-dihydropyridine ( 6 ), having an exocyclic double bond. The structure and stereochemistry of 6 was established with ¹H and ¹³C nmr spectroscopy.     

Total synthesis of (+)- and (-)-duryne: a potent anticancer agent from the marine sponge Cribrochalina dura. Establishment of the central double bond geometry and the absolute configuration of the chiral centers

Duryne is a C30 polyacetylenic alcohol with C2 symmetry. Despite its potent cytotoxicity, its central double bond geometry and the absolute configuration of the chiral centers were not determined. We report the total syntheses of both enantiomers of the anticancer natural product (+)-duryne and the establishment of its stereochemistry by synthesizing both geometric isomers. The natural (+)-duryne is identified as (15Z) and (3S,28S) as shown in structure 1. The autoxidation/Wittig coupling reaction was employed to synthesize the central (Z)-olefin. The stereochemistry of the (E)-alkene isomer was constructed stereoselectively by using LiAlH4 reduction of the corresponding alkyne. The absolute configurations of the chiral centers are established by using Burgess' enzymatic resolution procedure with Pseudomonas AK lipase.     

Synthesis of (-)-(R)-pyrrolam a and studies on its stability: a caveat on computational methods

The asymmetric synthesis of (-)-(R)-pyrrolam A was achieved in three operations from N-Boc pyrrolidine via an alpha-(N-carbamoyl)alkylcuprate vinylation reaction followed by N-Boc deprotection and cyclization. One-pot deprotection-cyclization procedures led to mixtures of pyrrolam A and its double bond isomers. These isomerization events could be circumvented by use of a two-step procedure. To guide aspects of the experiments, a series of computational energy evaluations and chemical shift predictions were performed with molecular mechanics, semiempirical, ab initio, and density functional methods. The relative stabilities of the double bond isomers, as estimated by experiment, challenged a number of computational methods, and only the MP2 model with its moderate degree of electron correlation came close to matching the experimental data. The MP2 method was further applied to an unusual aspect of the double bond migration between pyrrolam A and its isomer 9. The reaction (1 to 9) on neat samples is irreversible without racemization, and the alumina-mediated equilibration is accompanied by complete loss of enantiomeric excess. The source of the irreversibility was traced to asymmetric charge distribution in the intermediate dienolate anion. The analysis ultimately led to a semiquantitative sketch of the pyrrolam energy surface.     

Steric Effects in the Nucleophilic Addition of Pyrazoles Unsubstituted at a Nitrogen Atom to the Double Bond of Maleic Anhydride

Only one isomer, 5-methyl-3-phenyl-1-pyrazolylsuccinic acid, is formed on addition of 3(5)-methyl-5(3)-phenylpyrazole to the double bond of maleic anhydride.     

基于Nafion聚合物的气相色谱固定相的分离性能研究

该文以Nafion膜为固定相,采用动态涂覆法将其涂覆在毛细管内壁,并研究了其在气相色谱分离烷烃、醇及取代芳香烃等方面的性能。结果表明,通过改变色谱分析条件,不同碳数的直链烷烃、直链醇、蒎烯类异构体、C8芳烃异构体取代芳香位置异构体均在Nafion膜固定相上得到了有效的分离,大部分异构体在该固定相上基本按照沸点从低到高的顺序依次洗脱。此外,还对基于Nafion膜的色谱柱分离蒎烯异构体和芳香位置异构体进行了热力学研究,并发现该柱分离异构体过程为放热过程,蒎烯分离受焓变和熵变共同控制,而芳香异构体分离过程主要受焓变的控制。     

Remarkable aspects of unsaturation in trinuclear metal carbonyl clusters: the triiron species Fe3(CO)n (n = 12, 11, 10, 9)

The trinuclear iron carbonyls Fe(3)(CO)(n) (n = 12, 11, 10, 9) have been studied by density functional theory using the B3LYP and BP86 functionals. The experimentally known C(2)(v) isomer of Fe(3)(CO)(12), namely Fe(3)(CO)(10)(mu-CO)(2), is found to be the global minimum below the unbridged D(3)(h) isomer analogous to the known structures for Ru(3)(CO)(12) and Os(3)(CO)(12). The lowest-energy isomer found for Fe(3)(CO)(11) is Fe(3)(CO)(9)(mu(3)-CO)(2) with iron-iron distances in the Fe(3) triangle, suggesting the one double bond (2.460 A by B3LYP and 2.450 A by BP86) and two single bonds (2.623 A by B3LYP and 2.604 A by BP86) required to give each Fe atom the favored 18-electron configuration. Two different higher-energy dibridged structures Fe(3)(CO)(9)(mu(2)-CO)(2) are also found for Fe(3)(CO)(11). The lowest-energy isomer found for Fe(3)(CO)(10) is Fe(3)(CO)(9)(mu(3)-CO) with equivalent iron-iron distances in the Fe(3) ring (2.47 A by B3LYP or BP86). The lowest-energy isomer found for Fe(3)(CO)(9) is Fe(3)(CO)(6)(mu-CO)(3) with distances in the Fe(3) triangle possibly suggesting one single bond (2.618 A by B3LYP and 2.601 A by BP86), one weak double bond (2.491 A by B3LYP and 2.473 A by BP86), and one weak triple bond (2.368 A by B3LYP and 2.343 A by BP86). A higher-lying isomer of Fe(3)(CO)(9), i.e., Fe(3)(CO)(8)(mu-CO), at approximately 21 kcal/mol above the global minimum, has iron-iron distances strongly suggesting two single bonds (2.6 to 2.7 A) and one quadruple bond (2.068 A by B3LYP and 2.103 A by BP86). Wiberg Bond Indices are also helpful in evaluating the iron-iron bond orders.     

四环二萜的合成研究 5.对映贝壳杉-16-烯-19酸的合成

本文报道了一条从易得的甜叶菊苷出发经二次骨架重排合成了对映贝壳杉-16-烯-19-酸及其异构体.从甜叶菊苷合成对映贝壳杉-16-烯-19-酸的九步反应总产率为9%而合成对映贝壳杉-15-烯-19-酸的九步反应总产率炒17%.     

Recognizing ortho-, meta- or para-positional isomers of S-methyl methoxylphenylmethylenehydrazine dithiocarboxylates by ESI-MS2: The positional effect of the methoxyl substituent

The dissociation chemistry of the ortho-, meta- or para-isomers of protonated S-methyl methoxyl- (or chloro-) benzenylmethylenehydrazine dithiocarboxylate, RPhCHN–NHC(S)–SCH₃ (R = MeO– or Cl–), has been investigated by collision induced dissociation experiments and DFT theoretical calculations. The three methoxyl-substituted isomers were easily differentiated according to the different abundance of the characteristic ion at m/z 136, resulting from the varying reactivity of the (NSC)SCH₃ elimination. This fragmentation is triggered by the positive charge upon protonation on the imine N2. Relative to the meta isomer, the positive charge on N2 in the para isomer is dispersed due to the electron donating resonance of the methoxyl group, which leads to higher energy barrier in the dissociation reaction and the less abundant product ion (m/z 136) in the MS/MS. (NSC)SCH₃ elimination of the ortho- isomer is further suppressed due to both the resonance effect and the “ortho effect” (an intramolecular hydrogen bond), with much higher energy barrier and extremely lower abundance of the fragment ion (m/z 136, 0.4%). The chloro substituted isomers, however, are short of the above positional effects due to the weak electronic effect of the substituent, and share the similar tandem mass spectrum.     

Theoretical study on the potential energy surface of SiC2O

The DFT/B3LYP/6-311G(d) and CCSD(T)/6-311G(2df) (single-point) methods have been used to investigate the potential energy surface of SiC₂O. A total of 11 isomers are located, which are connected by 13 interconversion transition states. The global minimum is the linear SiCCO with ¹Σ⁺ electronic state whose structure can be described as cumulenic double bonding form :SiCCÖ:. The isomer O-cSiCC possessing SiCC three-membered ring with an exocyclic OSi bond also shows considerable stability. Both SiCCO and O-cSiCC are kinetically stable towards isomerization and dissociation. Further calculations are performed at the CCSD(T)/6-311G(2df)//QCISD/6-311G(2d) level to obtain more reliable energies, geometrical parameters, harmonic vibrational frequencies and infrared intensities of the isomers. The energies and geometrical parameters are also calculated with the CASPT2//CASSCF methods.     

First total synthesis of vialinin A, a novel and extremely potent inhibitor of TNF-alpha production

Vialinin A, a powerful inhibitor (IC50 90 pM) of TNF-alpha production, was synthesized from sesamol in 11 steps with 28% overall yield. The key reactions include a double Suzuki coupling of electron-rich aryl triflate with phenylboronic acid and an oxidative deprotection of bis-MOM ether. In addition, the related synthetic studies also suggest the necessity for structural revision of ganbajunin C, a positional isomer of vialinin A.     

Resolving Sphingolipid Isomers Using Cryogenic Infrared Spectroscopy

1‐Deoxysphingolipids are a recently described class of sphingolipids that have been shown to be associated with several disease states including diabetic and hereditary neuropathy. The identification and characterization of 1‐deoxysphingolipids and their metabolites is therefore highly important. However, exact structure determination requires a combination of sophisticated analytical techniques due to the presence of various isomers, such as ketone/alkenol isomers, carbon–carbon double‐bond (C=C) isomers and hydroxylation regioisomers. Here we demonstrate that cryogenic gas‐phase infrared (IR) spectroscopy of ionized 1‐deoxysphingolipids enables the identification and differentiation of isomers by their unique spectroscopic fingerprints. In particular, C=C bond positions and stereochemical configurations can be distinguished by specific interactions between the charged amine and the double bond. The results demonstrate the power of gas‐phase IR spectroscopy to overcome the challenge of isomer resolution in conventional mass spectrometry and pave the way for deeper analysis of the lipidome.     

Elementary constituents of microdevices: the Ge2H fragment

Highly correlated ab initio electronic structure theory has been used to systematically investigate the linear (X 2Pi) GeGeH and H-bridged (X 2B1 and A 2A1) GeHGe structures and the isomerization transition state (A 2A') connecting X 2Pi with A 2A1. The equilibrium structures and physical properties have been predicted employing self-consistent field, configuration interaction with single and double excitations, coupled cluster with single and double excitations (CCSD), and CCSD with perturbative triple excitations [CCSD(T)]. Four correlation-consistent polarized valence-[cc-pVXZ and aug-cc-pVXZ (X=T and Q)] type basis sets were used in the study. For the H-bridged GeHGe isomer, the X 2B1 ground state is predicted to lie only 0.74 [0.95 with zero-point vibrational energy (ZPVE) corrections] kcal mol-1 below the A 2A1 excited state at the CCSD(T) level of theory with the augmented correlation-consistent polarized valence quadruple zeta (aug-cc-pVQZ) basis set. The X 2B1 state of the H-bridged GeHGe isomer lies 8.6 kcal mol-1 below the X 2Pi ground state of the linear GeGeH isomer. The forward isomerization barrier from the linear ground state to the A 2A' transition state is predicted to be 3.7 kcal mol-1. The reverse isomerization barrier between the A 2A1 GeHGe structure and the X 2Pi GeGeH structure is predicted to be 11.6 (10.8 with the ZPVE corrections) kcal mol-1 at the aug-cc-pVQZ CCSD(T) level of theory.     

New ambra odorants by photoreactions of 15, 16-dinorlabd-8(20)-en-13-one (author's transl)]

New Ambra Odorants by Photoreactions of 15, 16-Dinorlabd-8(20)-en-13-one . UV.-irradiation of 15,16-dinorlabd-8(20)-en-13-one ( 1 ) led to the fragmentation product 4 and its photo-cyclisation product 5 . Ethers 6 and 7 and the βγ-unsaturated alcohols 8 and 10 were formed via ketone 9 , a double bond isomer of 1 . The olfactory properties of the photo-products are described.     

Structural studies of an oligomer (vinyl chloride tetramer) isolated from poly(vinyl chloride) resin used for food packaging applications

A presumptive single component previously isolated from PVC base resin and tentatively identified from GC-MS data as a vinyl chloride tetramer (mol. wt = 248) has been the subject of further studies. After hydrogenation, two isomeric compounds were separable by capillary GC. Mass spectra confirmed the earlier assignment of one double bond in the parent compounds. Further evidence for the presence of a pair of isomers in the apparently pure tetramer was obtained by epoxidation where two products giving identical mass spectra were produced. The MS fragmentation pattern suggested that the double bond position was allylic to chlorine; GC-MS analysis of the derived chlorohydrins supported this conclusion. Analysis of the tetramer by NMR gave complex overlapping signals, thought to be due to impurities, which hindered interpretation. Some supportive evidence for an allylic double bond was obtained. The structure of the tetramer thus remains only partially determined; the complexities of isomer purification and the difficulties of assigning chlorine substituent patterns make future unequivocal characterisation unlikely.     

Measurement of acid-catalyzed isomerization of unsaturated aldehyde-2,4-dinitrophenylhydrazone derivatives by high-performance liquid chromatography analysis

Aldehyde-2,4-dinitrophenylhydrazones exist as (E)- and (Z)-geometrical isomers, and adventitious isomerization during sample preparation can cause analytical errors. Purified alkenal-2,4-dinitrophenylhydrazone derivatives comprise only the (E)-isomer. However, partial isomerization to the (Z)-isomer occurs upon addition of acid to attain an equilibrium isomer ratio. The UV-visible spectral properties of the isomers differ; the (Z)-isomer exhibiting a 6-10 nm lower absorption maximum compared to the (E)-isomer. Alkenal-2,4-dinitrophenylhydrazones having a CC double bond at the 2- or 3-position of the alkenal exhibited similar absorption maxima with an equilibrium isomer ratio (0.035) that was much lower than those of other alkenals. The CC double bond at the 3-position migrates to a position of conjugation with the CN double bond during hydrazone synthesis to form a stabilized molecular structure. Alkenal-2,4-dinitrophenylhydrazones having a double bond at the 4-position or greater exhibited a similar absorption maxima equilibrium isomer ratio (0.14) to alkanal-2,4-dinitrophenylhydrazones. The quantitative analysis of carbonyl compounds in air or water using DNPH is usually conducted in the presence of an acid catalyst. Consequently, the solution of the direct extract prepared for HPLC or GC analysis contains both (E)- and (Z)-isomers.