A ribozyme and a catalytic DNA with peroxidase activity: active sites versus cofactor-binding sites

BACKGROUND: An 18-nucleotide DNA oligomer, PS2.M, derived using an in vitro selection method was previously reported to bind hemin (Fe(III)-protoporphyrinIX) with submicromolar affinity. The DNA-hemin complex exhibited DNA-enhanced peroxidative activity. PS2. M is guanine-rich and requires potassium ions to fold to its active conformation, consistent with its forming a guanine-quaduplex. In investigating the specific catalytic features of PS2.M we tested the peroxidative properties of its RNA version (rPS2.M) as well as that of an unrelated DNA guanine-quadruplex, OXY4. RESULTS: The hemin-binding affinity of rPS2.M was found to be 30-fold weaker than that of PS2.M. The UV-visible spectra and kinetics of enzymatic peroxidation of the RNA-hemin complex, however, were nearly identical to those of its DNA counterpart. Both displayed peroxidase activity substantially greater than those of heme proteins such as catalase and Fe(III)-myoglobin. Kinetic analysis suggested that PS2. M and rPS2.M catalyzed the breakdown of the hemin-hydrogen peroxide covalent complex to products. The hemin complex of folded OXY4 (which bound hemin as strongly as did rPS2.M) had a distinct absorption spectrum and only a minor peroxidase activity above the background level. CONCLUSIONS: The results indicated that it is possible for RNA and DNA of the same sequence to fold to form comparable cofactor-binding sites, and to show comparable catalytic behavior. The results further suggest that only a subset of cofactor-binding sites formed within folded nucleic acids might be able to function as active sites, by providing the appropriate chemical environments for catalysis.     

The peroxidase activity of a hemin--DNA oligonucleotide complex: free radical damage to specific guanine bases of the DNA.

A specific DNA oligonucleotide--hemin complex (PS2.M--hemin complex) that exhibits DNA-enhanced peroxidative activity was studied by EPR and UV--visible spectroscopy and by chemical probing analysis. EPR data obtained from low-temperature experiments on the PS2.M--hemin complex showed both a low-field g approximately 6 and a high-field g approximately 2 signal. These EPR signals are typical of high-spin ferric heme with axial symmetry as judged by the EPR spectrum of six-coordinate heme iron in acidic Fe(III)-myoglobin. This similarity is consistent with the presence of two axial ligands to the heme iron within the PS2.M--hemin complex, one of which is a water molecule. Optical analyses of the acid-base transition for the hemin complex yielded a pK(a) value for the water ligand of 8.70 +/- 0.03 (mean +/- SD). Low-temperature EPR analysis coupled with parallel spin-trapping investigations following the reaction of the PS2.M--hemin complex and hydrogen peroxide (H(2)O(2)) indicated the formation of a carbon-centered radical, most likely on the PS2.M oligonucleotide. Chemical probing analysis identified specific guanine bases within the PS2.M sequence that underwent oxidative damage upon reaction with H(2)O(2). These and other experimental findings support the hypothesis that the interaction of specific guanines of PS2.M with the bound hemin cofactor might contribute to the superior peroxidative activity of the PS2.M--hemin complex.     

Dual Amplified Electrochemical Immunosensor for Hepatitis B Virus Surface Antigen Detection Using Hemin/G‐Quadruplex Immobilized onto Fe3O4‐AuNPs or (Hemin‐Amino‐rGO‐Au) Nanohybrid

A sensitive electrochemical immunosensor for Hepatitis B virus surface antigen (HBsAg) detection was fabricated based on hemin/G‐quadruplex interlaced onto Fe₃O₄‐AuNPs or hemin ‐amino‐reduced graphene oxide nanocomposite (H‐amino‐rGO‐Au). G‐quadruplex DNAzyme, which is composed of hemin and guanine‐rich nucleic acid, is an effective signal amplified tool for its outstanding peroxidase activity and Fe₃O₄‐AuNPs or (H‐amino‐rGO‐Au) nanocomposites with quasi‐enzyme activity provide appropriate support for the immobilization of hemin/G‐quadruplex. The target protein was sandwiched between the primary antibody immobilized on the GO and secondary antibody immobilized on the Fe₃O₄‐AuNPs or (H‐amino‐rGO‐Au) nanocomposites and glutaraldehyde was used as linking agent for the immobilization of primary antibody on the surface of GO. Both Fe₃O₄‐AuNPs and H‐amino‐rGO‐Au nanocomposite and also hemin/G‐quadruplex can cooperate the electrocatalytic reduction of H₂O₂ in the presence of methylene blue as mediator. The proposed immunosensor has a wide linear dynamic range of 0.1 pg/ml to 300 pg/ml with a detection limit of 60 fg/ml when Fe₃O₄‐AuNPs was used for immobilization of hemin/G‐quadruplex, while the dynamic range and DL were 0. 1–1000 pg/mL and 10 fg/mL, respectively in the presence of H‐amino‐rGO‐ Au nanocomposite as platform for immobilizing of hemin/G‐quadruplex. The proposed immunosensor was also used for analysis of HBsAg in spiked human serum samples with satisfactory results.     

Segregated reduced graphene oxide polymer composite as a high performance electromagnetic interference shield

Herein, we report the synthesis of a graphene/polymer composite via a facile and straightforward approach for electromagnetic interference (EMI) shielding applications. Polystyrene (PS) beads were added in graphene oxide (GO)/water solution followed by the addition of hydroiodic acid (HI) for in situ reduction of GO. The composite solution (rGO/PS) was filtered, hot compressed and tested for EMI shielding and dielectric measurements. A 2-mm thick segregated rGO/PS sample with 10 wt% filler loading delivered a high EMI shielding effectiveness (SE) of 29.7 dB and an AC electrical conductivity of 21.8 S m^?1, which is well above the commercial requirement for EMI shielding applications. For comparison with the segregated rGO/PS composite, a control polymer composite sample utilizing a thermally reduced graphene oxide was synthesized by following a conventional coagulation approach. The as-synthesized conventional rGO/PS yield an EMI SE of 14.2 dB and electrical conductivity of 12.5 S m^?1. The high EMI shielding of segregated rGO/PS is attributed to the better filler-to-filler contact among graphene layers surrounded by PS beads and also to the better reduction and preservation of graphene structure during reduction process that makes the low temperature chemically reduced segregated rGO/PS approach a viable route compared to high temperature thermally reduced conventional rGO/PS approach.     

Multifunctional G‐Quadruplex Aptamers and Their Application to Protein Detection

Two significant G‐quadruplex aptamers named AGRO100 and T30695 are identified as multifunctional aptamers that can bind the protein ligands nucleolin or HIV‐1 integrase and hemin. Besides their strong binding to target proteins, both AGRO100 and T30695 exhibit high hemin‐binding affinities comparable to that of the known aptamer (termed PS2M) selected by the in vitro evolution process. Most importantly, their corresponding hemin–DNA complexes reveal excellent peroxidase‐like activities, higher than that of the reported hemin–PS2M DNAzyme. This enables these multifunctional aptamers to be applied to the sensitive detection of proteins, which is demonstrated by applying AGRO100 to the chemiluminescence detection of nucleolin expressed at the surface of HeLa cells. Based on the specific AGRO100–nucleolin interaction, the surface‐expressed nucleolin of HeLa cells is labeled in situ with the hemin–AGRO100 DNAzyme, and then determined in the luminol–H₂O₂ system. Through this approach, the sensitive detection of total nucleolin expressed at the surface of about 6000 HeLa cells is accomplished. Our results suggest that exploiting new functions of existing aptamers will help to extend their potential applications in the biochemical field.     

Selective and sensitive determination of copper ions in soft drink based on high catalysis of hemin–graphene hybrid nanosheets coupled with enzyme inhibitions

A simple and selective colorimetric biosensor was presented based on high catalysis of hemin–graphene hybrid nanosheets coupled with enzyme inhibitions. Alcohol oxidase (AO) can catalyze the oxidations of methanol to produce hydrogen peroxide (H₂O₂). Subsequently, the resulting H₂O₂ could be catalyzed to oxidize 3,3,5,5-tetramethylbenzidine (TMB) and then produce a blue color reactions by using hemin–graphene hybrid nanosheets with intrinsic peroxidase-like activity. The activity of AO could be selectively inhibited by the copper ions, and therefore, the oxidase-catalyzed reactions of TMB was decreased. Fortunately, other metal ions even at 10 or 100 times copper ions concentrations showed no intensive inhibitions to the AO activity. Based on this functional materials-enzyme inhibitions system, a simple, selective and sensitive colorimetric biosensor was established to determine copper ions in soft drinks. The linear relationship was obtained from 5 nM to 1 μM, and the detections limit was 1.4 nM. The results were in good agreement with those obtained by the classic ICP-MS. It was demonstrated that the proposed method had an excellent practical perspective on the determinations of copper ions in foodstuff samples.     

Aniline as a dispersing and stabilizing agent for reduced graphene oxide and its subsequent decoration with Ag nanoparticles for enzymeless hydrogen peroxide detection

An aqueous dispersion of reduced graphene oxide (rGO) has been successfully prepared via chemical reduction of graphene oxide (GO) by hydrazine hydrate in the presence of aniline for the first time. The noncovalent functionalization of rGO by aniline leads to a rGO dispersion that can be very stable for several months without the observation of any floating or precipitated particles. Several analytical techniques including Raman spectroscopy and X-ray photoelectron spectroscopy (XPS) have been used to characterize the resulting rGO. Taking advantages of the fact reducing ability of aniline toward AgNO(3), we further demonstrated the subsequent decoration of rGO with Ag nanoparticles (AgNPs) by in situ chemical reduction of silver salts. It was found that such AgNP/rGO nanocomposites exhibit good catalytic activity toward the reduction of hydrogen peroxide (H(2)O(2)), leading to an enzymeless sensor with a fast amperometric response time of less than 2s. The linear detection range is estimated to be from 100 μM to 80 mM (r=0.9991), and the detection limit is estimated to be 7.1 μM at a signal-to-noise ratio of 3.     

Binuclear cyclopentadienylmetal nitrosyls of iron, cobalt, and nickel: comparison with related carbonyl derivatives

The binuclear cyclopentadienylmetal nitrosyls and carbonyls Cp2M2(AO)n (A = N, M = Fe, Co, Ni; A = C, M = Ni; n = 2, 1) are studied by density functional theory using the B3LYP and BP86 functionals. In general, structures with bridging AO ligands are energetically preferred over those with terminal AO ligands. Thus, the global minima for Cp2M2(AO)2 are all found to have closely related axial dimetallocene structures with two symmetrically bridging AO ligands but variable planarity of the central M(mu-AO)2M units. Similarly, the single AO ligands in the global minima for Cp2M2(AO) are found to bridge symmetrically the pair of metal atoms. However, structures with terminal AO groups and a single bridging Cp ligand are also found at accessible energies for CpM2(NO)(mu-Cp) (M = Fe and Co) and CpNi2(CO)(mu-Cp). The metal-metal bond distances in Cp2M2(AO)n derivatives correlate reasonably well with the requirements of the 18-electron rule. In this connection, the unusual dimer Cp2Ni2(mu-NO)2 has a Ni-Ni bond distance suggestive of a single bond and geometry suggesting one one-electron donor bridging NO group and one three-electron donor bridging NO group. However, dissociation of Cp2Ni2(mu-NO)2 into the well-known stable monomer CpNiNO is highly favored energetically.     

Investigation of the Photodecomposition of Hemin and Trace Amount Determination of Hemin with Flow Injection Chemiluminescence Method

Using the hemin‐H₂O₂‐Na₂CO₃‐NaOH chemiluminescence (CL) system, the study on the photodecomposition behavior of hemin under ultraviolet light and solar light were carried out and the determination of hemin was developed coupled with simple flow injection technique. The results showed that the decomposition reaction of hemin in different light irradiations corresponded with a first‐order reaction. And then the determination of hemin was completed by the CL emission from the reaction of hemin with H₂O₂ in aqueous carbonate. The linear range was 2.2 × 10^?10 to 6.88 × 10^?7 M and the detection limit was 2.2 × 10^?11 M (S/N = 3). The relative standard deviation (RSD) was 2.82% for ten independent detections of 1.72 × 10^?8 M hemin. As a preliminary application, the proposed method was successfully applied for the analysis of hemin in pharmaceutical formulations and animal blood with a recovery of 96?108%. A possible CL mechanism of the present system was discussed, and free radicals were suggested to be involved in this reaction.     

In-reactor stabilization of polypropene

Propene was polymerized with a high activity, high stereospecific supported Ziegler-Natta catalyst in presence of phenolic antioxidants (AO), phosphite processing stabilizers (PS) or sterically hindered amine stabilizers (HAS).PS and some HAS grades did not influence propene polymerization, but AO and most commercial HAS could interfere with the catalyst and reduce catalyst activity.     

石墨烯氢氧化钴复合催化剂的一步合成及其对酸性橙的催化降解(英文)

用一步合成自组装法制备出了氢氧化钴与还原氧化石墨烯(Co(OH)2/rGO)的复合催化剂,并将其用于水中染料的催化降解实验.通过X射线衍射(XRD),激光拉曼(Raman)光谱,透射电镜(TEM),X射线能量色散谱(EDS)以及X射线光电子能谱(XPS)等一系列分析手段对催化剂的结构形貌进行了详细的表征,表征结果证实氢氧化钴很好地附着在还原石墨烯的表面.最后初步考察了催化剂催化单过硫酸钾(PMS)降解酸性橙(AO7)的性能.结果表明,催化剂显示出了高效的催化性能,酸性橙的色度可在12 min内完全去除,总有机碳(TOC)实验也表明染料降解的同时也可获得较高的矿化度.循环稳定性实验表明在进行到第三次实验时,催化剂仍能保持高的催化活性,将酸性橙在16 min内降解完毕.     

石墨烯氢氧化钴复合催化剂的一步合成及其对酸性橙的催化降解

用一步合成自组装法制备出了氢氧化钴与还原氧化石墨烯（Co（OH）₂/rGO）的复合催化剂,并将其用于水中染料的催化降解实验. 通过X射线衍射（XRD）,激光拉曼（Raman）光谱,透射电镜（TEM）,X射线能量色散谱（EDS）以及X射线光电子能谱（XPS）等一系列分析手段对催化剂的结构形貌进行了详细的表征,表征结果证实氢氧化钴很好地附着在还原石墨烯的表面. 最后初步考察了催化剂催化单过硫酸钾（PMS）降解酸性橙（AO7）的性能. 结果表明,催化剂显示出了高效的催化性能,酸性橙的色度可在12 min内完全去除,总有机碳（TOC）实验也表明染料降解的同时也可获得较高的矿化度. 循环稳定性实验表明在进行到第三次实验时,催化剂仍能保持高的催化活性,将酸性橙在16 min内降解完毕.     

A Novel Enzymatic Glucose Biosensor and Nonenzymatic Hydrogen Peroxide Sensor Based on (3‐Aminopropyl) Triethoxysilane Functionalized Reduced Graphene Oxide

In the present study, a novel enzymatic glucose biosensor using glucose oxidase (GOx) immobilized into (3‐aminopropyl) triethoxysilane (APTES) functionalized reduced graphene oxide (rGO‐APTES) and hydrogen peroxide sensor based on rGO‐APTES modified glassy carbon (GC) electrode were fabricated. Nafion (Nf) was used as a protective membrane. For the characterization of the composites, Fourier transform infrared spectroscopy (FTIR), X‐ray powder diffractometer (XRD), and transmission electron microscopy (TEM) were used. The electrochemical properties of the modified electrodes were investigated using electrochemical impedance spectroscopy, cyclic voltammetry, and amperometry. The resulting Nf/rGO‐APTES/GOx/GC and Nf/rGO‐APTES/GC composites showed good electrocatalytical activity toward glucose and H₂O₂, respectively. The Nf/rGO‐APTES/GC electrode exhibited a linear range of H₂O₂ concentration from 0.05 to 15.25 mM with a detection limit (LOD) of 0.017 mM and sensitivity of 124.87 μA mM⁻¹ cm⁻². The Nf/rGO‐APTES/GOx/GC electrode showed a linear range of glucose from 0.02 to 4.340 mM with a LOD of 9 μM and sensitivity of 75.26 μA mM⁻¹ cm⁻². Also, the sensor and biosensor had notable selectivity, repeatability, reproducibility, and storage stability.     

Electrochemical Sensor Based on a Novel Pt−Au Bimetallic Nanoclusters Decorated on Reduced Graphene Oxide for Sensitive Detection of Ofloxacin

Pt−Au nanoclusters decorated on the surface of reduced graphene oxide (rGO/Pt−Au) was facilely prepared by one‐pot electrochemical reduction. The morphology and composition of rGO/Pt−Au composites had been characterized by scanning electron microscopy (SEM) coupled with energy‐dispersive X‐ray spectrometry (EDX), fourier transform‐infrared spectroscopy (FT‐IR) and electrochemical methods. Ofloxacin is a member of synthetic quinolones which has been widely used for the treatment of common diseases in humans and animals. The performance of the rGO/Pt−Au nanocomposite toward the oxidation of ofloxacin was compared with the other similar nanostructures like rGO/Pt and rGO/Au. In the optimized conditions, two linear calibration curves were obtained, from 0.08 to 10 μM and 10 to 100 μM ofloxacin. A detection limit of 0.05 μM ofloxacin was observed at pH 5.7 for the GCE/rGO/Pt−Au. The proposed sensor was successfully applied to determine ofloxacin in tablets and human urine samples and the results were satisfactory.     

Hemin Functionalized Multiwalled Carbon Nanotubes as a Matrix for Sensitive Electrogenerated Chemiluminescence Cholesterol Biosensor

Based on hemin‐MWCNTs nanocomposite and hemin‐catalyzed luminol‐H₂O₂ reaction, a sensitive electrogenerated chemiluminescence (ECL) cholesterol biosensor was proposed in this paper. Firstly, hemin‐MWCNTs was prepared via π–π stacking and modified on the surface of GCE. Subsequently, cholesterol oxidase (ChOx) was adsorbed on the modified electrode to achieve a cholesterol biosensor. Hemin‐MWCNTs nanocomposite provided the electrode with a large surface area to load ChOx, and endowed the nanostructured interface on the electrode surface to enhance the performance of biosensor. The biosensor responded to cholesterol in the linear range from 0.3 µM to 1.2 mM with a detection limit of 0.1 µM (S/N=3).     

Fabrication of ultra‐small ruthenium nanoparticles on porous modified reduced graphene oxide and its application in solvent‐free oxidation of cyclohexene with molecular oxygen

In the present work, ruthenium nanoparticles were synthesized on functionalized reduced graphene oxide (rGO). First, the surface of rGO was modified with two para‐arsanilic acid and dithiooxamide promoters to create the rGO with scattered hydrophilic positions. The ruthenium nanoparticles were synthesized and immobilized simultaneously in small hydrophilic micro‐reactors under mild conditions. Characterization of the synthesized nanocatalyst was confirmed with different techniques, such as transmission electron microscopy (TEM), X‐ray diffraction, Fourier transform‐infrared and scanning electron microscopy. TEM images of the synthesized catalyst show the Ru nanoparticles have diameters less than 6 nm. The designed nanocatalyst was investigated for the selective liquid phase oxidation of cyclohexene with molecular oxygen in an autoclave under solvent‐free conditions, which obtained a maximum of 91% conversion and 90% selectivity under optimized conditions. The catalytic activity over rGO‐AO‐TO/Ru recycled catalyst remained at a satisfactory state after at least five runs.     

Oxygen Plasma Technology-Assisted Preparation of Three-Dimensional Reduced Graphene Oxide/Polypyrrole/Strontium Composite Scaffold for Repair of Bone Defects Caused by Osteoporosis

Repairs of bone defects caused by osteoporosis have always relied on bone tissue engineering. However, the preparation of composite tissue engineering scaffolds with a three-dimensional (3D) macroporous structure poses huge challenges in achieving osteoconduction and osteoinduction for repairing bone defects caused by osteoporosis. In the current study, a three-dimensional macroporous (150–300 μm) reduced graphene oxide/polypyrrole composite scaffold modified by strontium (Sr) (3D rGO/PPY/Sr) was successfully prepared using the oxygen plasma technology-assisted method, which is simple, safe, and inexpensive. The findings of the MTT assay and AO/EB fluorescence double staining showed that 3D rGO/PPY/Sr has a good biocompatibility and effectively promoted MC3T3-E1 cell proliferation. Furthermore, the ALP assay and alizarin red staining showed that 3D rGO/PPY/Sr increased the expression levels of ALP activity and the formation of calcified nodules. The desirable biocompatibility, osteoconduction, and osteoinduction abilities, assure that the 3D macroporous rGO/PPY/Sr composite scaffold offers promising potential for use in the repair of bone defects caused by osteoporosis in bone tissue engineering.     

Self-assembled oligo(phenylene ethynylene)s/graphene nanocomposite with improved electrochemical performances for dopamine determination

In this work, a novel 1,4-bis (4- aminophenylethynyl)benzene (OPE-NH₂, a symmetric linear conjugated oligo(phenylene ethynylene)s derive) and chemically-reduced graphene oxide (rGO) nanocomposite (OPE-NH₂/rGO) was synthesized by a simple self-assembly method. The OPE-NH₂/rGO nanocomposite was stable and water soluble. The formation of OPE-NH₂/rGO nanocomposite was ascribed to the π–π stacking interaction between the conjugated structure of OPE-NH₂ and rGO as well as the electrostatic force between the amino group of OPE-NH₂ and the carboxyl group on rGO, which was characterized by FT-IR, UV–vis spectra and fluorescence spectra. The OPE-NH₂/rGO nanocomposite exhibited significantly improved electrocatalytic activity to the oxidization of dopamine (DA) than that of rGO or OPE-NH₂. The electrochemical performances of OPE-NH₂/rGO were dependent on the OPE-NH₂ contents, and OPE-NH₂ content of 5 wt% exhibited the highest activity. Compared with that of rGO, the nanocomposite presented superior high sensitivity with detection limit of 5 nM, excellent selectivity, wide linear range (0.01–60 μM) and good stability on the determination of DA. The practical application of the developed OPE-NH₂/rGO nanocomposite modified electrode was successfully demonstrated for DA determination in human serum samples.     

DNA-enhanced peroxidase activity of a DNA aptamer-hemin complex

Background: In vitro selection (SELEX) previously identified short single-stranded DNAs that specifically bound N-methylmesoporphyrin IX (NMM), a stable transition-state analogue for porphyrin-metallation reactions. Interestingly, iron (III)-protoporphyrin (hemin) was a good competitive inhibitor for the DNA-catalyzed metallation reaction, and appeared to bind strongly to the NMM-binding DNA aptamers. We investigated the peroxidase activity of the aptamer-hemin complexes to see if the DNA component of the complex, like the apoenzymes in protein peroxidases, could enhance the low intrinsic peroxidatic activity of hemin.Results: Two porphyrin-bind ing DNA aptamers bound hemin with submicromolar affinity. The aptamer-hemin complexes had significantly higher peroxidase activity than hemin alone, under physiological conditions. The V_obs of the PS2.M-hemin complex was 250 times greater than that of hemin alone, and significantly superior to a previously reported hemin—catalytic-antibody complex. Preliminary spectroscopic evidence suggests the coordination of the hemin iron in the complex changes, such that the complex more closely resembles horseradish peroxidase and other heme proteins rather than hemin.Conclusions: A new class of catalytic activity for nucleic acids is reported. The aptamer-hemin complexes described are novel DNA enzymes and their study will help elucidate the structural and functional requirements of peroxidase enzymes in general and the ways that a nucleic acid ‘apoenzyme’ might work to enhance the intrinsic peroxidatic ability of hemin. These aptamer-hemin complexes could be regarded as prototypes for redox-catalyzing ribozymes in a primordial ‘RNA world’.     

Manganese Oxide Nanoparticles/Reduced Graphene Oxide as Novel Electrochemical Platform for Immobilization of FAD and its Application as Highly Sensitive Persulfate Sensor

In this study, manganese oxide nanoparticles/reduced graphene oxide(MnOxNPs/rGO) was used as support for strong immobilization of flavin adenine dinucleotide(FAD). A thin film of rGO cast on the electrode surface, followed by performing electrodeposition of MnOxNPs at applied constant potential of +1.4 V vs. Ag/AgCl for 200 s. Finally, FAD was electrodeposited onto the rGO/MnOxNPs film by potential cycling between 1.0 to ?1.0 V in solution containing 1 mg ml^?1 FAD. Electrochemical properties and catalytic activity of GCE/rGO‐MnOxNPs/FAD toward persulfate (S₂O₈^2?) reduction was investigated. Under optimized condition, the concentration calibration range, detection limit, and sensitivity were 0.1 μM–2 mM, 90 nM and 125.8 nA/μM, respectively, using hydrodynamic amperometry technique.