Synthetic Studies Towards the O-Specific Polysaccharide of Shigella Sonnei

ABSTRACT

Synthetic routes are described to zwitter-ionic disaccharides that are diastereoisomerically related to frame-shifted repeating units of the title polysaccharide that contains 2-acetamido-4-amino-2,4,6-trideoxy-D-galactose and 2-acetamido-2-deoxy-L-altruronic acid. The intermediates corresponding to the trideoxygalactose residue feature acylamino functions at C-2 and an azido group at C-4. Best results were obtained with N-phthaloyl- and N-trichloroacetyl-protected derivatives. The intermediates corresponding to the uronic acid residue were either a D-altruronic acid-derived acceptor or a D-altrose-derived donor in which C-6 was oxidized after disaccharide formation.     

Selection of protecting groups and synthesis of a β-1,4-GlcNAc-β-1,4-GlcN unit

Abstract  

The synthesis of the disaccharide tert-butyldimethylsilyl (4-O-acetyl-2-azido-3,6-di-O-benzyl-2-deoxy-β-d-glucopyranosyl)-3,6-di-O-benzyl-2-deoxy-2-phthalimido-β-d-glucopyranoside, designed as a repeating unit appearing in oligo- and polysaccharides, which exhibits a distinguished “obverse–reverse” property in β-1,4-glucan chain, was accomplished. This disaccharide was synthesized by glycosylation of a phthalimido sugar with an azido sugar. A selective removal of the two different protecting groups at C-2 for obtaining 2-acetamido-4-O-(2-amino-2-deoxy-β-d-glucopyranosyl)-2-deoxy-β-d-glucopyranose indicates that the selection and combination, using phthalimido and azido as protecting groups, are an excellent strategy for synthesizing such target disaccharides.     

Structure of carbohydrate antigens from <Emphasis Type="Italic">Microbulbifer</Emphasis> sp. KMM 6242

A capsular polysaccharide (CPS) containing D-galactosamine uronic acid and D-alanine was isolated from a culture of the marine proteobacterium Microbulbifer sp. KMM 6242. 2D NMR spectroscopy showed that the CPS is a homopolymer of 2-acetamido-2-deoxy-N-(D-galacturonyl)-D-alanine with the structure →4)-β-D-GalpNAcA6(D-Ala)-(1→. An O-specific polysaccharide containing D-ribose and D-galactose was isolated from the cell-membrane lipopolysaccharide. 1D and 2D NMR spectroscopy established the structure of the disaccharide repeating unit of the polysaccharide as →3)-β-D-Ribf-(1→4)-β-D-Galp-(1→.     

Synthesis of a chito-tetrasaccharide β-1,4-GlcNAc-β-1,4-GlcN repeating unit

Abstract  

tert-Butyldimethylsilyl (4-O-acetyl-2-azido-3,6-di-O-benzyl-2-deoxy-β-d-glucopyranosyl)-(1 → 4)-3,6-di-O-benzyl-2-deoxy-2-phthalimido-β-d-glucopyranoside (Kawada and Yoneda [MOCHEM-D-09-00120], 2009), designed as a repeating disaccharide unit in a β-glucan having two different faces, was converted into a glycosyl donor and an acceptor. The glycosyl acceptor was glycosylated with the donor to afford a chito-tetrasaccharide derivative in good yield. Phthalimido and azido groups in the tetrasaccharide were successively converted into acetamido and free amino groups, and all other protecting groups were cleaved to obtain the chito-tetrasaccharide (2-amino-2-deoxy-β-d-glucopyranosyl)-(1 → 4)-(2-acetamido-2-deoxy-β-d-glucopyranosyl)-(1 → 4)-(2-amino-2-deoxy-β-d-glucopyranosyl)-(1 → 4)-2-acetamido-2-deoxy-d-glucopyranose.     

Enzyme-catalyzed synthesis of natural and unnatural polysaccharides

Synthesis of natural and unnatural polysaccharide was achieved via “enzymatic polymerization” by utilizing a glycoside hydrolase as catalyst. Particularly, hyaluronan, chondroitin, and their derivatives belonging to glycosaminoglycans have been prepared using sugar oxazoline monomers designed on the basis of the concept “transition-state analogue substrate”. The oxazoline derivatives of N-acetylhyalobiuronate [GlcAβ(1→3)GlcNAc] and N-acetylchondrosine [GlcAβ(1→3)GalNAc], which have the repeating disaccharide structures of hyaluronan and chondroitin, respectively, were successfully polymerized by the catalysis of hyaluronidase, giving rise to synthetic hyaluronan and chondroitin. Their 2-substituted oxazoline derivatives were also polymerized to the corresponding N-acylated hyaluronan and chondroitin derivatives. Furthermore, N-acetylchondrosine oxazoline derivatives sulfated at the C4, the C6, and both the C4 and C6 of the GalNAc unit were catalyzed by hyaluronidase; the monomer sulfated at the C4 was polymerized to chondroitin 4-sulfate with well-defined structure, whereas the other two monomers were exclusively hydrolyzed to the corresponding disaccharides. These different kinds of natural and unnatural polysaccharides having relatively high molecular weights were produced in all cases by the catalysis of hyaluronidase. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 5014–5027, 2006     

Asymmetric polymers. XXVI. Optically active polyamides: (–)poly-(S)-4-tert-butoxymethyl- and 4-hydroxymethyl-6-hexanamide

Racemic and optically active hexahydro-5-tert-butoxymethyl-2H-azepin-2-one were polymerized, and the resulting poly-4-tert-butoxymethyl-6-hexanamides were treated to remove the tert-butyl protective group. ORD and CD spectra of (–)-poly-(S)-4-tert-butoxymethyl-6-hexanamide and (–)poly-(S)-4-hydroxymethyl-6-hexanamide were compared with spectra of their low molecular weight models, (S)(–)-6-acetamido-4-tert-butoxymethyl-N-methylhexanamide and (S)( – )-6-acetamido-4-hydroxymethyl-N-methylhexanamide, in 2,2,2-trifluoroethanol, p-dioxane–water mixtures, and methanol–water mixtures.     

Synthesis of the Trisaccharide Repeating Unit of the K-Antigen from Klebsiella Type-63

Abstract

The benzyl substituted ethyl thioglycoside of L-fucose was found to be a more reactive donor compared to 2-O-benzyl substituted p-tolyl thioglycoside of D-galactose. Using the benzyl substituted ethyl thioglycoside of L-fucose (8), as a donor and the suitably substituted p-tolyl thioglycoside of D-galactose (7) as acceptor, the p-tolyl thioglycoside of the disaccharide, 9, was prepared. This disaccharide donor was allowed to react with a suitably protected galactopyranosyluronic acid acceptor, 16, to give the trisaccharide repeating unit of the K-antigen from Klebsiella type 63.     

Solid-Phase Enzymatic Synthesis of a Lewis a Trisaccharide Using an Acceptor Reversibly Bound to Sepharose

Abstract

The disaccharide 2-aminoethyl O-β-D-galactopyranosyl-(1→3)-2-acetamido-2-deoxy-β-D-glucopyranoside was reacted with thiobutyrolactone to give a disaccharide with a thiol group on the aglycone. This disaccharide was reacted with activated Thiopropyl Sepharose, which gave a disaccharide bound to Sepharose via a disulphide bond. Enzymatic fucosylation, using GDP-fucose and partially purified human milk fucosyltransferase, gave a trisaccharide in good yield, which was cleaved from Sepharose by treatment with mercaptoethanol or dithiothreitol.     

Synthesis and fluorescence of N-substituted-1,8-naphthalimides

A number of novel N-substituted-1,8-naphthalimides have been prepared and their fluorescence yields measured in water at pH 7.4. The type of substitutent and the substitution pattern on the naphthalimide nucleus produce markedly different fluorescence yields, (quantum efficiencies, ø varying from ø = 0-0037 for N-(3-N'-morpholino-1-propyl)-4-amino-3-methoxy-1,8-naphthalirnide (7) to ø = 0–77 for N-(3-bromopropyl)-4-acetamido-1,8-naphthalimide (31).     

Aminopropylcellulose,synthesis and derivatization

The preparation of 3-aminopropylcellulose from cyanoethylcellulose is readily achieved. Reduction of the cyano groups with borane-dimethyl sulfide in tetrahydrofuran or a borane-tetrahy-drofuran complex proceeds quantitatively in 3 h to a corresponding 3-aminopropylcellulose. The presence of primary amine functions is confirmed by spectroscopy and a positive ninhydrin test; the concentration of amino substituents, as ascertained by titration, ranged from 1.2 to 6.4 meq/g. Because the derivatives are neither soluble nor excessively swollen in water, applications as ion-exchange resins or chromatographic supports can be envisioned. Treatment of 3-aminopropyl-cellulose with acetyl chloride, phenyl isocyanate, or p-toluenesulfonyl isocyanate produced 3-acetamido-, 3-(N′-phenyluredo)-, or 3-(N′-p-toluenesulfonyluredo)-N-propylcellulose. Alkylation with methyl chloride yielded a water-soluble quaternary ammonium salt.     

Synthesis of 1,2,3-triazolyl analog of Neisseria meningitidis A capsular polysaccharide

Abstract

Towards constructing a stable, non-hydrolyzable linkage for Neisseria meningitidis type A (MenA) polysaccharide, the phosphate bridge of its (1→6)-linked 2-acetamido-2-deoxy-α-D-mannopyranosyl phosphate repeating unit was replaced by a triazolyl analog using Cu(I) catalyzed click reaction. The synthesis involved anomeric azidation of N-acetyl-D-mannosamine derivative from its acetate precursor using stoichiometric amount of FeCl₃ and one-pot synthesis of precursors for di- and tri- triazolyl saccharides with an azidoethyl spacer at the reducing end for bioconjugation.     

C-Glycoside Analogues of N4-(2-Acetamido-2-deoxy-β-D-glucopyranosyl)-L-asparagine: Synthesis and conformational analysis of a cyclic C-glycopeptide

The synthesis of C-glycosidic analogues 15–22 of N⁴-(2-acetamido-2-deoxy-β-D -glucopyranosyl)-L -asparagine (Asn(N⁴GlcNAc)) possessing a reversed amide bond as an isosteric replacement of the N-glycosidic linkage is presented. The peptide cyclo(-D -Pro-Phe-Ala-CGaa-Phe-Phe-) (CGaa = C-glycosylated amino acid; 24 ) was prepared to demonstrate that 3-[(3-acetamido-2,6-anhydro-4,5,7-tri-O-benzyl-3-deoxy-β-D -glycero-D -guloheptonoyl)amino]-2-[(9H-fluoren-9-yloxycarbonyl)amino]propanoic acid ( 22 ) can be used in solid-phase peptide synthesis. The conformation of 24 was determined by NMR and molecular-dynamics (MD) techniques. Evidence is provided that the CGaa side chain interacts with the peptide backbone. The different C-glycosylated amino acids 15–21 were prepared by coupling 3-acetamido-2,6-anhydro-4,5,7-tri-O-benzyl-3-deoxy-β-D -glycero-D -gulo-heptonic acid ( 4 ) with diamino-acid derivatives 8–14 in 83–96% yield. The synthesis of 4 was performed from 2-(acetamido-3,4,6-tri-O-benzyl-2-deoxy-β-D -glucopyranosyl) tributylstannane ( 2 ) by treatment with BuLi and CO₂ in 83% yield. Similarly, propyl isocyanat yielded the glycoheptonamide 7 in 52% from 2 . Compound 2 was obtained from 2-acetamido-3,4,6-tri-O-benzyl-2-deoxy-D -glucopyranose ( 1 ) by chlorination and addition of tributyltinlithium in 74% yield. A procedure for a multigram-scale synthesis of 1 is given.     

Synthesis of the Methyl α-Glycoside of the Intracatenary Disaccharide Repeating Unit of the O-Polysaccharide of Vibrio Cholerae O:1. A Comparison of two Assembly Strategies

Abstract

The two strategies engaged in the construction of the title disaccharide 17 comprise: 1. assembly of a diamino disaccharide and its N-acylation using chiral reagents to introduce the 4-(3-deoxy-l-glycero-tetronyl) group, followed by deprotection, and 2. preparation of a glycosyl acceptor and a glycosyl donor both having the chiral 3-deoxy-l-glycero-tetronamido group already in place, their condensation to give a fully substituted disaccharide, and deprotection. Accordingly, the crystalline diamino disaccharide methyl 2-O-(4-amino-3-O-benzyl-4, 6-dideoxy-α-d-mannopyranosyl)-4-amino-3-O-benzyl-4, 6-dideoxy-α-d-mannopyranoside, (14), was prepared from the known [Bundle, D. R. et al., Carbohydr. Res. 174, 239 (1988)] diazido disaccharide 12, and treated with the lactone 30, or its acetylated or benzylated analogs 31 and 32, respectively, as the N-acylating reagents. Subsequent deprotection of the respective products applying standard chemistry gave 17. Alternatively, the methyl α-glycoside of the monomeric intracatenary repeating unit of Vibrio cholerae 0:1 (2) was converted to the fully benzoylated glycosyl chloride 26, and the latter glycosyl donor was condensed with methyl 3-O-benzyl-4,6-dideoxy-4-(2,4-di-O-benzoyl-3-deoxy- l-glycero-tetronamido)-α-d-mannopyranoside (24), to give the corresponding, fully protected derivative 27. Deprotection then readily gave 17. It appears that the title disaccharide can be most efficiently synthesized using synthons 24 and 26. The lactones 30 and 32 appear to be promising acylating reagents for the introduction of the 3-deoxy-l-glycero-tetronamido group when higher oligosaccharides in this series will be synthesized via their (poly)amino precursors.     

Synthesis of a Single Repeat Unit of Type VIII Group B Streptococcus Capsular Polysaccharide 1

Abstract

We have synthesized a single repeat unit of type VIII Group B Streptococcus capsular polysaccharide, the structure of which is {L-Rhap(β1→4)-D-Glcp(β1→4)[Neu5Ac(α2→3)]-D-Galp(β→4)}_n. The synthesis presented three significant synthetic challenges namely: the L-Rhap(β→4)-D-Glcp bond, the Neu5Ac(α2→3)-D-Galp bond and 3,4-D-Galp branching. The L-Rhap bond was constructed in 60% yield (α:β 1:1.2) using 4-O-acetyl-2,3-di-O-benzoyl-α-L-rhamnopyranosyl bromide 6 as donor, silver silicate as promotor and 6-O-benzyl-2,3-di-O-benzoyl-1-thio-β-D-glucopyranoside as acceptor to yield disaccharide 18. The Neu5Ac(α2→3) linkage was synthesized in 66% yield using methyl [phenyl 5-acetamido-4,7,8,9-tetra-O-acetyl-3,5-dideoxy-2-thio-D-glycero-D-galacto-nonulopyranosid]onate as donor and triol 2-(trimethylsilyl) ethyl 6-O-benzyl-β-D-galactopyranoside as acceptor to give disaccharide 21. The 3,4-D-Galp branching was achieved by regioselective glycosylation of disaccharide diol 21 by disaccharide 18 in 28% yield to give protected tetrasaccharide 22. Tetrasaccharide 22 was deprotected to give as its 2-(trimethylsilyl)ethyl glycoside the title compound 1a. In addition the 2-(trimethylsilyl)ethyl group was cleaved and the tetrasaccharide coupled by glycosylation (via tetrasaccharide trichloroacetimidate) to a linker suitable for conjugation.

     

Synthesis of fully conjugated aromatic polyazomethine from AB-type monomer using soluble precursor method

A new AB-type monomer, N,N-bistrimethylsilylated p-aminobenz-aldehyde diethyl acetal was prepared via three steps from p-bromoaniline as a starting material. The two-stage polymerization involving a soluble precursor polymer process gave a poly(p-phenylenevinylene)-type polyazomethine, poly(1,4-phenylene-nitrilomethylidyne). The first stage of polymerization was carried out in tetrahydrofuran or hexamethylphosphoramide containing water at room temperature. In the second stage, the polymer was thermally converted into the final polyazomethine by heating over 300°C to form a free-standing film. The film was reddish brown and insoluble in common organic solvents. The investigation of the first-stage products by means of MALDI-TOF mass spectroscopy proved the oligomers with 4-11 repeating units per molecule. From the ¹H-NMR analysis of the model reaction, the polymerization mechanism was found to be a stepwise polycondensation of 4-diethoxymethylaniline which was formed by removal of two silyl groups of the monomer.     

Synthesis of Four Spacer-Containing Trisaccharides with the 4-0-(β-L-Rhamnopyranosyl)-D-glucopyranose Unit in Common,Representing Fragments of Capsular Polysaccharides from Streptococcus Pneumoniae Types 2, 7F, 22F,and 23F

Abstract

The synthesis is reported of 3-aminopropyl 3-O-[4-O(β-L-rhamnopyranosyl)-β-D-glucopyranosyl]-α-L-rhamnopyranoside (34), 3-aminopropyl 2-acetamido-3-O-[4-0-(β-L-rhamnopyranosyl)-β-D-glucopyranosyl]-2-deoxy-β-D-galactopyranoside (37), 3-aminopropyl 3-O-[4-O-(β-L-rhamnopyranosyl)-α-D-glucopyranosyl]-α-D-galactofuranoside (41), and 3-aminopropyl 4-O-[4-O-(β-L-rhamnopyranosyl)-β-D-glucopyranosyl]-β-D-galactopyranoside (45). These are spacer-containing fragments of the capsular polysaccharides of Streptococcus pneumoniae type 2, 7F, 22F, and 23F, respectively, which are constituents of Pneumovax^© 23. 2,3,4-Tri-O-benzyl-α-L-rhamnopyranosyl bromide was coupled to l,6-anhydro-2,3-di-(O-benzyl-β-D-glucopyranose (3). Opening of the anhydro ring, removal of AcO-1, and imidation of l,6-anhydro-2,3-di- O-benzyl-4-O-(2,3,4-tri-O-benzyl-β-L-rhamnopyranosyl)-β-D-glucopyranose (4β) afforded 6-O-acetyl-2,3-di-O-ben-zyl-4-O-(2,3,4-tri- O-benzyl-β-L-rhamnopyranosyl)-αβ-D-glucopyranosyl trichloroacet-imidate (7αβ). Condensation of 7αβ with 3-N-benzyloxycarbonylaminopropyl 2-O-ben-zyl-5,6-O-isopropylidene-α-D-galactofuranoside (26), followed by deprotection gave 41 Opening of the anhydro ring of 4 p followed by debenzylation, acerylauon, removal of AcO-1, and imidation yielded 2,3,6-tri-(9-aceryl-4-O-(2,3,4-tri-0-acetyl-P-L-rharnnopyran-.-osyl)-α-D-glucopyranosyl trichloroacetimidate (11). Condensation of 11 with 3-N-bcn-zyloxycarbonylaminopropyl 2,4-di-O-benzyl-α-L-rhamnopyranoside (18), with 3-N-bcn-zyloxycarbonylaminopropyl 2-acetamido-4,6-O-benzylidene-2-deoxy-β-D-galactopyran-oside (21), or with 3-N -benzyloxycarbonylaminopropyl 2-O-acetyl-3-O-allyl-6-O-benzyl-β-D-galactopyranoside (31), followed by deprotection afforded 34, 37, and 45, respectively.     

Systematic Estimates for Possible Regular Helix Models of Heteropolymeric Glucans,Elsinan and Lichenan,Using N-H Mapping Method

Regular helical structures of polysaccharides are most conveniently described by a set of the helix parameters; n for the number of chemical repeating units per turn and h in Å for the rise per unit along the helix axis. A two dimensional mapping of n-h values for possible helix models along with the potential energy surfaces allows one to estimate conformational accessibility of a given posaccharide.^1-3 Recently, we have adopted the method to study an acidic heteropolysaccharide⁴ and a branching glucan.⁵ These polysaccharides involve two or three sets of backbone glycosidic linkages (Φ-Ψ), each of which varies independently, and, therefore, enormous multidimensional spaces must be explored. Their n-h maps were calculated based on the low energy Φ-Ψ values derived from MM3^6-8-generated, relaxed-residue potential energy maps^{9, 10} of the component disaccharides. The present assessment of helix models for the two heteropolymeric glucans is achieved by calculating n-h maps in a similar fashion. These glucans are the two poly(disaccharide)s, poly[(1→3)-α-D-maltotriose] (elsinan) and poly[(1→3)-β-D-cellotriose] (lichenan). In addition to single-stranded helices, three types of mutiple helices; double-parallel, and double-antiparallel, and triple helices have also been examined.     

Synthesis of glycosaminoglycan oligosaccharides. Part 5: Synthesis of a putative heparan sulfate tetrasaccharide antigen involved in prion diseases

The synthesis of the putative prion-associated heparan sulfate tetrasaccharide containing two d-glucuronic acid units is reported. Key to the synthesis were the differentiation of the N-acetylated and N-unsubstituted glucosamine units, the high-yielding glucosylation at O-4 of an N-acetyl-d-glucosamine derivative and the α-selective glycosylation of the 4′-OH group of a β-d-GlcpA-(1→4)-d-GlcpNAc disaccharide building block with a disaccharide thioglycoside donor.     

Novel Synthesis of a Macromonomer Having Organosilyl and Amino Groups

Abstract

Reaction between dimethyldivinylsilane (1) and N,N′-diethyl-N-lithio-ethylenediamine (2a) in the presence of N,N′-diethylethylenediamine (3a) in THF at 20°C gave a monoadduct, 3,3-dimethyl-6-ethyl-3-sila-6,9-diaza-1-undecene (4a). An anionic self-polyaddition reaction of 4a in the presence of lithium diisopropylamide (LDA) proceeded to form oligomers. Each of the oligomers thus obtained was found to carry a polymerizable vinylsilane moiety at the oligomer chain terminal. As a result, a new type of macromonomer having alternating repeating units of ethylenediamine and organosilyl groups was synthesized. Acid-base titration showed the macromonomer to have unique characteristics on protonation of diamine moieties. Anionic polyaddition reactions between 1 and N-lithio-piperazine (2b) in the presence of piperazine (3b) also gave a macromonomer consisting of alternating repeating units of piperazine and organosilyl groups (4b). Radical copolymerizations of styrene with 5b gave comblike graft copolymers.     

Separation of isomeric disaccharides by traveling wave ion mobility mass spectrometry using CO2 as drift gas

The use of CO₂ as a massive and polarizable drift gas is shown to greatly improve peak‐to‐peak resolution (R_p‐p), as compared with N₂, for the separation of disaccharides in a Synapt G2 traveling wave ion mobility cell. Near or baseline R_p‐p was achieved for three pairs of sodiated molecules of disaccharide isomers, that is, cellobiose and sucrose (R_p‐p = 0.76), maltose and sucrose (R_p‐p = 1.04), and maltose and lactose (R_p‐p = 0.74). Ion mobility mass spectrometry using CO₂ as the drift gas offers therefore an attractive alternative for fast and efficient separation of isomeric disaccharides. Copyright © 2012 John Wiley & Sons, Ltd.