Photodissociation of pyrrole-ammonia clusters by velocity map imaging: mechanism for the H-atom transfer reaction

The photodissociation dynamics of pyrrole-ammonia clusters (PyH·(NH(3))(n), n = 2-6) has been studied using a combination of velocity map imaging and non-resonant detection of the NH(4)(NH(3))(n-1) products. The excited state hydrogen-atom transfer mechanism (ESHT) is evidenced through delayed ionization and presents a threshold around 236.6 nm, in agreement with previous reports. A high resolution determination of the kinetic energy distributions (KEDs) of the products reveals slow (～0.15 eV) and structured distributions for all the ammonia cluster masses studied. The low values of the measured kinetic energy rule out the existence of a long-lived intermediate state, as it has been proposed previously. Instead, a direct N-H bond rupture, in the fashion of the photodissociation of bare pyrrole, is proposed. This assumption is supported by a careful analysis of the structure of the measured KEDs in terms of a discrete vibrational activity of the pyrrolyl co-fragment.     

Photodissociation of pyrrole-ammonia clusters below 218 nm: Quenching of statistical decomposition pathways under clustering conditions

The excited state hydrogen transfer (ESHT) reaction in pyrrole-ammonia clusters (PyH[middle dot](NH(3))(n), n = 2-5) at excitation wavelengths below 218 nm down to 199 nm, has been studied using a combination of velocity map imaging and non-resonant detection of the NH(4)(NH(3))(n-1) products. Special care has been taken to avoid evaporation of solvent molecules from the excited clusters by controlling the intensity of both the excitation and probing lasers. The high resolution translational energy distributions obtained are analyzed on the base of an impulsive mechanism for the hydrogen transfer, which mimics the direct N-H bond dissociation of the bare pyrrole. In spite of the low dissociation wavelengths attained (～200 nm) no evidence of hydrogen-loss statistical dynamics has been observed. The effects of clustering of pyrrole with ammonia molecules on the possible statistical decomposition channels of the bare pyrrole are discussed.     

Hydrogen transfer in excited pyrrole-ammonia clusters

The excited state hydrogen atom transfer reaction (ESHT) has been studied in pyrrole-ammonia clusters [PyH-(NH(3))(n)+hnu-->Py.+.NH(4)(NH(3))(n-1)]. The reaction is clearly evidenced through two-color R2P1 experiments using delayed ionization and presents a threshold around 235 nm (5.3 eV). The cluster dynamics has also been explored by picosecond time scale experiments. The clusters decay in the 10-30 ps range with lifetimes increasing with the cluster size. The appearance times for the reaction products are similar to the decay times of the parent clusters. Evaporation processes are also observed in competition with the reaction, and the cluster lifetime after evaporation is estimated to be around 10 ns. The kinetic energy of the reaction products is fairly large and the energy distribution seems quasi mono kinetic. These experimental results rule out the hypothesis that the reaction proceeds through a direct N-H bond rupture but rather imply the existence of a fairly long-lived intermediate state. Calculations performed at the CASSCF/CASMP2 level confirm the experimental observations, and provide some hints regarding the reaction mechanism.     

Excess electrons bound to small ammonia clusters

Dipole-bound anions of small water clusters (H2O) N- (N >or= 2) are well-known from experiment and theory. In contrast, the smallest ammonia cluster anion detected so far is the 13-mer (NH3)13-. Here dipole-bound states of small ammonia clusters (NH3)N- (N = 2, 3, 4) are investigated using coupled-cluster ab initio methods. The trimer is found to be the smallest ammonia cluster able to form a dipole bound state, and its vertical detachment energy is predicted to be 27 meV, somewhat smaller than that of the water dimer. For the ammonia tetramer dipole-bound states with triple-acceptor monmers are identified akin to the well-studied double-acceptor binding motif of water cluster anions. Moreover, a (NH3)6-)hexamer that has been considered as a model for a cavity-bound state is examined. Ab initio results for this system challenge the notion that an electron localized in an ammonia cavity can be thought of as a delocalized radical anion.     

Hydrogen transfer dynamics in a photoexcited phenol/ammonia (1:3) cluster studied by picosecond time-resolved UV-IR-UV ion dip spectroscopy

The picosecond time-resolved IR spectra of phenol/ammonia (1:3) cluster were measured by UV-IR-UV ion dip spectroscopy. The time-resolved IR spectra of the reaction products of the excited state hydrogen transfer were observed. From the different time evolution of two vibrational bands at 3180 and 3250 cm(-1), it was found that two isomers of hydrogenated ammonia radical cluster .NH(4)(NH(3))(2) coexist in the reaction products. The time evolution was also measured in the near-IR region, which corresponds to 3p-3s Rydberg transition of .NH(4)(NH(3))(2); a clear wavelength dependence was found. From the observed results, we concluded that (1) there is a memory effect of the parent cluster, which initially forms a metastable product, .NH(4)-NH(3)-NH(3), and (2) the metastable product isomerizes successively to the most stable product, NH(3)-.NH(4)-NH(3). The time constant for OH cleaving, the isomerization, and its back reaction were determined by rate-equation analysis to be 24, 6, and 9 ps, respectively.     

Excited state hydrogen transfer in fluorophenol.ammonia clusters studied by two-color REMPI spectroscopy

Two-color (1 + 1') REMPI mass spectra of o-, m- and p-fluorophenol.ammonia (1 ration) clusters were measured with a long delay time between excitation and ionization lasers. The appearance of NH(4)(NH(3))(n-1)(+) with 100 ns delay after exciting the S(1) state is a strong indication of generation of long-lived species via S(1). In analogy with the phenol.ammonia clusters, we conclude that an excited state hydrogen transfer reaction occurs in o-, m- and p-fluorophenol.ammonia clusters. The S(1)-S(0) transition of o-, m- and p-fluorophenol.ammonia (1 : 1) clusters were measured by the (1 + 1') REMPI spectra, while larger (1 ration) cluster (n = 2-4) were observed by monitoring the long-lived NH(4)(NH(3))(n-1) clusters action spectra. The vibronic structures of m- and p-fluorophenol.ammonia clusters are assigned based on vibrational calculations in S(0). The o-fluorophenol.ammonia (1 : 1) cluster shows an anharmonic progression that is analyzed by a one-dimensional internal rotational motion of the ammonia molecule. The interaction between the ammonia molecule and the fluorine atom, and its change upon electronic excitation are suggested. The broad action spectra observed for the o-fluorophenol.ammonia (1 : n) cluster (n>== 2) suggest the excited state hydrogen transfer is faster than in m- and p-fluorophenol.ammonia clusters. The different reaction rates between o-, m- and p-fluorophenol.ammonia clusters are found from comparison between the REMPI and action spectra.     

Exploring excited-state hydrogen atom transfer along an ammonia wire cluster: competitive reaction paths and vibrational mode selectivity

The excited-state hydrogen-atom transfer (ESHAT) reaction of the 7-hydroxyquinoline(NH(3))(3) cluster involves a crossing from the initially excited (1)pipi(*) to a (1)pisigma(*) state. The nonadiabatic coupling between these states induces homolytic dissociation of the O-H bond and H-atom transfer to the closest NH(3) molecule, forming a biradical structure denoted HT1, followed by two more Grotthus-type translocation steps along the ammonia wire. We investigate this reaction at the configuration interaction singles level, using a basis set with diffuse orbitals. Intrinsic reaction coordinate calculations of the enol-->HT1 step predict that the H-atom transfer is preceded and followed by extensive twisting and bending of the ammonia wire, as well as large O-H...NH(3) hydrogen bond contraction and expansion. The calculations also predict an excited-state proton transfer path involving synchronous proton motions; however, it lies 20-25 kcal/mol above the ESHAT path. Higher singlet and triplet potential curves are calculated along the ESHAT reaction coordinate: Two singlet-triplet curve crossings occur within the HT1 product well and intersystem crossing to these T(n) states branches the reaction back to the enol reactant side, decreasing the ESHAT yield. In fact, a product yield of approximately 40% 7-ketoquinoline.(NH(3))(3) is experimentally observed. The vibrational mode selectivity of the enol-->HT1 reaction step [C. Manca, C. Tanner, S. Coussan, A. Bach, and S. Leutwyler, J. Chem. Phys. 121, 2578 (2004)] is shown to be due to the large sensitivity of the diffuse pisigma(*) state to vibrational displacements along the intermolecular coordinates.     

Coordination chemistry of silver cations

While in pure solvents Ag(+) is known to be tetrahedrally coordinated, in the presence of ligands such as ammonia it forms linear complexes, usually explained by the ion's tendency toward sd-hybridization. To explore this disparity, we have investigated the reaction of ammoniated silver cations Ag(+)(NH(3))(n)(), n = 11-23, with H(2)O as well as the complementary process, the reaction of Ag(+)(H(2)O)(n)(), n = 25-45, with NH(3) by means of FT-ICR mass spectrometry. In both cases, ligand exchange reactions take place, leading to clusters with a limited number of NH(3) ligands. The former reaction proceeds very rapidly until only three NH(3) ligands are left, followed by a much slower loss of an additional ligand to form Ag(+)(NH(3))(2)(H(2)O)(m)() clusters. In the complementary process, the reaction of Ag(+)(H(2)O)(n)() with NH(3) five ammonia ligands are very rapidly taken up by the clusters, with a much less efficient uptake of a sixth one. The accompanying DFT calculations reveal a delicate balance between competing effects where not only the preference of Ag(+) for sd-hybridization, but also its ability to polarize the ligands and thus affect the strength of their hydrogen bonding, as well as the ability of the solvent to form extended hydrogen-bonded networks are important.     

Ultraviolet photodissociation dynamics of the benzyl radical

Ultraviolet (UV) photodissociation dynamics of jet-cooled benzyl radical via the 4(2)B(2) electronically excited state is studied in the photolysis wavelength region of 228 to 270 nm using high-n Rydberg atom time-of-flight (HRTOF) and resonance enhanced multiphoton ionization (REMPI) techniques. In this wavelength region, H-atom photofragment yield (PFY) spectra are obtained using ethylbenzene and benzyl chloride as the precursors of benzyl radical, and they have a broad peak centered around 254 nm and are in a good agreement with the previous UV absorption spectra of benzyl. The H + C(7)H(6) product translational energy distributions, P(E(T))s, are derived from the H-atom TOF spectra. The P(E(T)) distributions peak near 5.5 kcal mol(-1), and the fraction of average translational energy in the total excess energy, , is ～0.3. The P(E(T))s indicate the production of fulvenallene + H, which was suggested by recent theoretical studies. The H-atom product angular distribution is isotropic, with the anisotropy parameter β ≈ 0. The H/D product ratios from isotope labeling studies using C(6)H(5)CD(2) and C(6)D(5)CH(2) are reasonably close to the statistical H/D ratios, suggesting that the H/D atoms are scrambled in the photodissociation of benzyl. The dissociation mechanism is consistent with internal conversion of the electronically excited benzyl followed by unimolecular decomposition of the hot benzyl radical on the ground state.     

Enhancement of a Lewis acid-base interaction via solvation: ammonia molecules and the benzene radical cation

The interaction between ammonia and the benzene radical cation has been investigated by gas-phase studies of mass selected ion clusters {C(6)H(6)-(NH(3))(n=0-8)}(+) via tandem quadrupole mass spectrometry and through calculations. Experiments show a special stability for the cluster ion that contains four ammonias: {C(6)H(6)(NH(3))(4)}(+). Calculations provide evidence that the first ammonia forms a weak dative bond to the cyclohexadienyl radical cation, {C(6)H(6)-NH(3)}(+), where there is a transfer of electrons from ammonia to benzene. Additional solvating ammonia molecules form stabilizing hydrogen bonds to the ring-bound ammonia {C(6)H(6)-NH(3)}(+).(NH(3))(n), which cause cooperative changes in the structure of the cluster complex. Free ammonia is a weak hydrogen bond donor, but electron transfer from NH(3) to the benzene ring that strengthens the dative bond will increase the hydrogen acidity and the strength of the cluster hydrogen bonds to the added ammonia. A progressive "tightening" of this dative bond is observed upon addition of the first, second, and third ammonia to give a cluster stabilized by three N-(+)H x N hydrogen bonds. This shows that the energetic cost of tightening the dative bond is recovered with dividends in the formation of stable cluster hydrogen bonds.     

Structure and energetics of nanometer size clusters of sulfuric acid with ammonia and dimethylamine

The structures of positively and negatively charged clusters of sulfuric acid with ammonia and/or dimethylamine ((CH(3))(2)NH or DMA) are investigated using a combination of Monte Carlo configuration sampling, semiempirical calculations, and density functional theory (DFT) calculations. Positively charged clusters of the formula [(NH(4)(+))(x)(HSO(4)(-))(y)](+), where x = y + 1, are studied for 1 ≤ y ≤ 10. These clusters exhibit strong cation-anion interactions, with no contribution to the hydrogen-bonding network from the bisulfate ion protons. A similar hydrogen-bonding network is found for the [(DMAH(+))(5)(HSO(4)(-))(4)](-) cluster. Negatively charged clusters derived from the reaction of DMA with [(H(2)SO(4))(3)(NH(4)(+))(HSO(4)(-))(2)](-) are also studied, up to the fully reacted cluster [(DMAH(+))(4)(HSO(4)(-))(5)](-). These clusters exhibit anion-anion and ion-molecule interactions in addition to cation-anion interactions. While the hydrogen-bonding network is extensive for both positively and negatively charged clusters, the binding energies of ions and molecules in these clusters are determined mostly by electrostatic interactions. The thermodynamics of amine substitution is explored and compared to experimental thermodynamic and kinetic data. Ammonia binds more strongly than DMA to sulfuric acid due to its greater participation in hydrogen bonding and its ability to form a more compact structure that increases electrostatic attraction between oppositely charged ions. However, the greater gas-phase basicity of DMA is sufficient to overcome the stronger binding of ammonia, making substitution of DMA for ammonia thermodynamically favorable. For small clusters of both polarities, substitutions of surface ammonium ions are facile. As the cluster size increases, an ammonium ion becomes encapsulated in the center of the cluster, making it inaccessible to substitution.     

How an enzyme tames reactive intermediates: positioning of the active-site components of lysine 2,3-aminomutase during enzymatic turnover as determined by ENDOR spectroscopy

Lysine 2,3-aminomutase (LAM) utilizes a [4Fe-4S] cluster, S-adenosyl-L-methionine (SAM), and pyridoxal 5'-phosphate (PLP) to isomerize L-alpha-lysine to L-beta-lysine. LAM is a member of the radical-SAM enzyme superfamily in which a [4Fe-4S]+ cluster reductively cleaves SAM to produce the 5'-deoxyadenosyl radical, which abstracts an H-atom from substrate to form 5'-deoxyadenosine (5'-Ado) and the alpha-Lys* radical (state 3 (Lys*)). This radical isomerizes to the beta-Lys* radical (state 4(Lys*)), which then abstracts an H-atom from 5'-Ado to form beta-lysine and the 5'-deoxyadenosyl radical; the latter then regenerates SAM. We use 13C, 1,2H, 31P, and 14N ENDOR to characterize the active site of LAM in intermediate states that contain the isomeric substrate radicals or analogues. With L-alpha-lysine as substrate, we monitor the state with beta-Lys*. In parallel, we use two substrate analogues that generate stable analogues of the alpha-Lys* radical: trans-4,5-dehydro-L-lysine (DHLys) and 4-thia-L-lysine (SLys). This first glimpse of the motions of active-site components during catalytic turnover suggests a possible major movement of PLP during catalysis. However, the principal focus of this work is on the relative positions of the carbons involved in H-atom transfer. We conclude that the active site facilitates hydrogen atom transfer by enforcing van der Waals contact between radicals and their reacting partners. This constraint enables the enzyme to minimize and even eliminate side reactions of highly reactive species such as the 5'-deoxyadensosyl radical.     

Torsional barriers in aromatic molecular clusters as probe of the electronic properties of the chromophore.

We present a computer program that is capable of fitting n-fold torsional barriers Vn (n = 2-6) and torsional constants F simultaneously to high- and low-resolution spectroscopic data of different isotopomeric internal rotors. The program has been utilized to fit independently barriers and torsional constants for both electronic states of several aromatic clusters. The constant F of the ammonia moiety in the phenol-ammonia cluster is shown to decrease upon electronic excitation, thus imaging the formation of a hydrogen-bonded complex between the phenoxy radical and the NH4 radical in the excited state. In contrast, for the naphthol-ammonia 1:1 clusters no change of F of ammonia could be found. For phenol-methanol cluster we found a decrease of F upon excitation which points to a stronger hydrogen bond between phenol and methanol in the excited state. A strong reduction of the torsional barrier upon excitation points to the formation of a methoxonium radical in a similar photoreaction as in phenol-ammonia cluster. For the phenol-water system we postulate the same mechanism, a photoreaction, which leads to a translocated hydrogen atom in the S1 state what can be deduced from the change of the torsional constant upon electronic excitation.     

Microsolvation of HCl within cold NH3 clusters

The solid state solvation of HCl molecules with small ammonia clusters at an average temperature of 100 K was investigated by on-the-fly molecular dynamics methodology. Structures close to the proton jump from HCl molecule to the ammonia have been further checked with the MP2/aug-cc-pvDZ calculations. Ionization of HCl and/or sharing of the proton were found. Two Zundel-type ions were observedone with proton being shared between ammonium ion and Cl (-) anion (Cl (-)...H (+)...NH 3) in all complexes, and the second, between hydrogen chloride and Cl (-) anion in the HCl...Cl (-)...NH 4 (+)...(NH 3) 2 complex. However, in contrast to methanol clusters, ammonia clusters are not good for the proton wires since once the proton moves to ammonia, it is localized on the ammonium ion units.     

Solvation structure and stability of [(CH3)2NH]m(NH3)n-H hypervalent clusters: ionization potentials and switching of hydrogen-atom localized site

Ionization potentials (IPs) of [(CH(3))(2)NH](m)(NH(3))(n)-H hypervalent radical clusters produced by an ArF excimer laser photolysis of dimethylamine (DMA)-ammonia mixed clusters are determined by the photoionization threshold measurements. The IPs of the DMA(1)(NH(3))(n)-H hypervalent radicals decrease rapidly with the number of ammonia up to n=4, and then its decrease rate becomes much slower for n ≥ 5. This trend is very similar to that found for NH(4)(NH(3))(n) clusters. The calculated results on the stable structures and IP as well as the observed IP for DMA(1)(NH(3))(n)-H indicate that the hydrogen atom-localized site is the NH(3) moiety for n=1, while the doubly coordinated DMA-H is favorable for n=2-4, and then 4-fold-coordinated NH(4) is again more stable for n ≥ 5. These changes are consistent with the results on the femtosecond pump-probe experiments of DMA(n)-H clusters. Switching of the hydrogen atom-localized site is ascribed to the instability of DMA-H against a hydrogen-atom dissociation.     

MRD CI calculations of excited states of the SiH3 radical,including potential curves for the inversion mode and the dissociation SiH3 → SiH2 + H

Using the MRD CI method and large basis sets the vertical spectrum of silyl radical (SiH₃) has been calculated. The lowest excited state is the 4s Rydberg state, 41000 cm⁻¹ (5.2 eV) above the ground state. Only one excited valence state (2²E) was encountered, all other states are of Rydberg type. From potential curves for the inversion mode (symmetric bending motion) it was inferred that all Rydberg states are planar, whereas the valence excited state is highly pyramidalized. The investigation of the dissociation reaction SiH₃ → SiH₂ + H leads to the conclusion that the first excited state is dissociative.     

Ultraviolet photodissociation dynamics of the phenyl radical

Ultraviolet (UV) photodissociation dynamics of jet-cooled phenyl radicals (C(6)H(5) and C(6)D(5)) are studied in the photolysis wavelength region of 215-268 nm using high-n Rydberg atom time-of-flight and resonance enhanced multiphoton ionization techniques. The phenyl radicals are produced from 193-nm photolysis of chlorobenzene and bromobenzene precursors. The H-atom photofragment yield spectra have a broad peak centered around 235 nm and are in good agreement with the UV absorption spectra of phenyl. The H + C(6)H(4) product translational energy distributions, P(E(T))'s, peak near ~7 kcal/mol, and the fraction of average translational energy in the total excess energy, , is in the range of 0.20-0.35 from 215 to 268 nm. The H-atom product angular distribution is isotropic. The dissociation rates are in the range of 10(7)-10(8) s(-1) with internal energy from 30 to 46 kcal/mol above the threshold of the lowest energy channel H + o-C(6)H(4) (ortho-benzyne), comparable with the rates from the Rice-Ramsperger-Kassel-Marcus theory. The results from the fully deuterated phenyl radical are identical. The dissociation mechanism is consistent with production of H + o-C(6)H(4), as the main channel from unimolecular decomposition of the ground electronic state phenyl radical following internal conversion of the electronically excited state.     

The photodissociation dynamics of the ethyl radical, C2H5, investigated by velocity map imaging

The photodissociation dynamics of the ethyl radical C(2)H(5) has been investigated by velocity map imaging. Ethyl was produced by flash pyrolysis from n-propyl nitrite and excited to the A? (2)A(') (3s) Rydberg state around 250 nm. The energetically most favorable reaction channel in this wavelength region is dissociation to C(2)H(4) (ethene) + H. The H-atom dissociation products were ionized in a [1+1(')] process via the 1s-2p transition. The observed translational energy distribution is bimodal: A contribution of slow H-atoms with an isotropic angular distribution peaks at low translational energies. An expectation value for the fraction of excess energy released into translation of = 0.19 is derived from the data, typical for statistical dissociation reactions. In addition, a fast H-atom channel is observed, peaking around 1.8 eV. The latter shows an anisotropic distribution with β = 0.45. It originates from a direct dissociation process within less than a rotational period. Time-delay scans with varying extraction voltages indicate the presence of two rates for the formation of H-atoms. One rate with a sub-nanosecond time constant is associated with H-atoms with large translational energy; a second one with a time constant on the order of 100 ns is associated with H-atoms formed with low translational energy. The data confirm and extend those from previous experiments and remove some inconsistencies. Possible mechanisms for the dissociation are discussed in light of the new results as well as previous ones.     

Reactions of charged phenyl radicals with aliphatic amino acids in the gas phase

Gas-phase reactivity of five differently substituted positively charged phenyl radicals was examined toward six amino acids by using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR). The reactivity of the radicals studied was determined by the electrophilicity of the radical, which can be characterized by the radical's electron affinity (EA). The larger the electron affinity of the radical, the higher the overall reaction rate. In addition to the expected H-atom abstraction, several unprecedented reaction pathways were observed, including NH2 abstraction, SH abstraction, and SCH3 abstraction. These reaction pathways dominate for the most electrophilic radicals, and they may not follow radical but rather nucleophilic addition-elimination mechanisms. Hydrogen abstraction from glycine was also investigated theoretically. The results indicate that hydrogen abstraction from alphaC of glycine is both kinetically and thermodynamically favored over the NH2 group. The ordering of transition state energies for hydrogen abstraction from the alphaC and NH2 groups was found to reflect the radicals' EA ordering.     

Excited-state hydrogen-atom transfer along solvent wires: water molecules stop the transfer

Excited-state hydrogen-atom transfer (ESHAT) along a hydrogen-bonded solvent wire occurs for the supersonically cooled n = 3 ammonia-wire cluster attached to the scaffold molecule 7-hydroxyquinoline (7HQ) [Tanner, C.; et al. Science 2003, 302, 1736]. Here, we study the analogous three-membered solvent-wire clusters 7HQ.(NH3)n.(H2O)m, n + m = 3, using resonant two-photon ionization (R2PI) and UV-UV hole-burning spectroscopies. Substitution of H2O for NH3 has a dramatic effect on the excited-state H-atom transfer: The threshold for the ESHAT reaction is approximately 200 cm(-1) for 7HQ.(NH3)3, approximately 350 cm(-1) for both isomers of the 7HQ.(NH3)2.H2O cluster, and approximately 600 cm(-1) for 7HQ.NH3.(H2O)2 but increases to approximately 2000 cm(-1) for the pure 7HQ.(H2O)3 water-wire cluster. To understand the effect of the chemical composition of the solvent wire on the H-atom transfer, the reaction profiles of the low-lying electronic excited states of the n = 3 pure and mixed solvent-wire clusters are calculated with the configuration interaction singles (CIS) method. For those solvent wires with an NH3 molecule at the first position, injection of the H atom into the wire can occur by tunneling. However, further H-atom transfer is blocked by a high barrier at the first (and second) H2O molecule along the solvent wire. H-atom transfer along the entire length of the solvent wire, leading to formation of the 7-ketoquinoline (7KQ) tautomer, cannot occur for any of the H2O-containing clusters, in agreement with experimentally observed absence of 7KQ fluorescence.