A calorimetric study of plant–plant and plant–soil interactions of extracts from Ixorhea tschudiana

The effect of the CHCl₃ and MeOH extracts from aerial parts from the Northwestern Argentina endemic species Ixorhea tschudiana Fenzl. on germination of the dicot tomato and the monoct onion and on soil microbial activity was studied by calorimetric and calorespirometric experiments. The CHCl₃ extract inhibited seedling growth of tomato which increased with increasing concentrations. Seeds imbibed with 250 mg dm^?3 extract germinated 24 h later than control and those imbibed with 100 and 500 mg dm^?3 extract. This was reflected in the calculated low specific seedling growth rate (p_SGΔH_B) as determined from calorespirometric experiments. On the other hand, seedlings obtained in 500 mg dm^?3 extract showed shorter and thicker hairy roots than control with significantly higher p_SGΔH_B. Probably, the extract induces inhibition of water uptake by seedling roots. Germination was reduced 50% in onion seeds imbibed with 500 mg dm^?3 CHCl₃ extract which apparently is due to higher rate of imbibition during the first stages as determined for calorimetry. On the other hand, 83 and 250 mg kg^?1 of the MeOH and CHCl₃ extract seem to selectively inhibit the growth of certain microorganisms and to enhance the activity of soil actinomycetes. Two actinobacteria were isolated from soil treated with these concentrations of both extracts: Kocuria sp. and Kocuria rosea; this latter species is known as a keratinolytic agent and seems to degrade complex carbon compounds of the soil and those incorporated by the MeOH extract. Both Kocuria specie seem to be beneficial for the soil converting substrate into biomass and thus I. tschudiana could be used as a soil phytoremediator.     

Thermogravimetric and differential scanning calorimetric investigations of manganese–glycine interactions

Thermogravimetric (t.g.) and differential scanning calorimetric (d.s.c.) data have been used to study metal–amino acid interactions in adducts of general formula MnCl₂ · ngly (gly = glycine, n = 0.7, 2.0, 4.0 and 5.0). All the prepared adducts exhibit only a one step mass loss associated with the release of glycine molecules, except for the 0.7gly adduct, which exhibits two glycine mass loss steps. From d.s.c. data, the enthalpy values associated with the glycine mass loss can be calculated: MnCl₂ · 0.7gly = 409 and 399 kJ mol^–1, MnCl₂ · 2.0gly = 216 kJ mol^–1, MnCl₂ · 4.0gly = 326 kJ mol^–1 and MnCl₂ · 5.0gly = 423 kJ mol^–1, respectively. The enthalpy associated with the ligand loss, plotted as function of the number of ligands for the n = 2.0, 4.0 and 5.0 adducts, gave a linear correlation, fitting the equation: H (ligand loss)/kJ mol^–1 = 67 × (number of ligands, n) + 76. A similar result was achieved when the enthalpy associated with the ligand loss was plotted as a function of the _a(COO^–) bands associated with the coordination through the carboxylate group, 1571, 1575 and 1577 cm^–1, respectively, for the n = 2.0, 4.0 and 5.0 adducts, giving the equation H (ligand loss) /kJ mol^–1 = 33.5 × _a(COO^–) /cm^–1 – 52418.5. This simple equation provides evidence for the enthalpy associated with the ligand loss being very closely related to the electronic density associated with the metal–amino acid bonds.     

Inclusion of Paracetamol into β-cyclodextrin nanocavities in solution and in the solid state

We report on steady-state UV-visible absorption and emission characteristics of Paracetamol, drug used as antipyretic agent, in water and within cyclodextrins (CDs): β-CD, 2-hydroxypropyl-β-CD (HP-β-CD) and 2,6-dimethyl-β-CD (Me-β-CD). The results reveal that Paracetamol forms a 1:1 inclusion complex with CD. Upon encapsulation, the emission intensity enhances, indicating a confinement effect of the nanocages on the photophysical behavior of the drug. Due to its methyl groups, the Me-β-CD shows the largest effect for the drug. The observed binding constant showing the following trend: Me-β-CD>HP-β-CD>β-CD. The less complexing effectiveness of HP-β-CD is due to the steric effect of the hydroxypropyl-substituents, which can hamper the inclusion of the guest molecules. The solid state inclusion complex was prepared by co-precipitation method and its characterization was investigated by Fourier transform infrared spectroscopy, 1H NMR and X-ray diffractometry. These approaches indicated that Paracetamol was able to form an inclusion complex with CDs, and the inclusion compounds exhibited different spectroscopic features and properties from Paracetamol.     

Preparation of the Ca–diclofenac complex in solid state

Two ONNO type naphtaldehyde derivative Schiff base compounds were reduced and two symmetric phenol-amine ligands containing naphthalene groups were obtained; bis-N,N′[(2-hydroxy-1-naphtyl) methyl]-1,3-propanediamine (NAFL^H) and bis-N,N′[(2-hydroxy-1-naphtyl) methyl]-2,2′-dimetyhyl-1,3-propanediamine (NAFLDM^H). Homotrinuclear Ni(II) complexes of these ligands were prepared. The solid-state molecular structures of representative nickel complex of NAFLDM^H were determined using single crystal X-ray diffraction analysis. The terminal Ni(II) ions were found to be situated in between the donor atoms of the organic ligand. The central Ni(II) ion was observed to be bonded via two different μ-bridges. The phenolic oxygens and carboxylate ion were seen to form two different μ-bridges. TG analysis proved that the compounds have different thermal characteristics than those cited in literature. The complexes showed extreme exothermic degradation reactions in inert atmosphere. The complexes are ruptured with a two stepped exothermic reaction which appears huge heat over 300 °C. The heat appeared in O₂ atmosphere is observed to be higher than the heat appeared in inert atmosphere. Revealed heat is observed to be higher than the conventional explosive materials.     

Biophysical,spectroscopic and biochemical investigation of DNA–Cu(II)-GSH interactions

The interaction of DNA with Copper(II)-Glutathione (CuGSH) has been investigated by various biophysical methods. The interaction ratio of DNA and Copper(II)-Glutathione in solution phase has been determined spectrophotometrically and found to be 0.25. EPR spectroscopy and UV–Vis findings suggest that Cu(II)-Glutathione neither bound to the DNA bases covalently nor intercalated, this has further been substantiated by the determination of intrinsic binding constant (2.1 × 10²). Viscometric measurements also support this type of binding to DNA by Cu(II)-Glutathione. EPR studies and visible d–d spectra of CuGSH after interaction with DNA, suggested that Copper remained in the Copper(II) state. DNA conformations after interaction with Cu(II)-Glutathione has been determined spectroscopically. Circular dichroism studies revealed that the B conformation of DNA is changed to A after interaction with Cu(II)-Glutathione. This has further been substantiated by thin film IR (Infrared) studies.     

Self-assembly of β-turn forming synthetic tripeptides into supramolecular β-sheets and amyloid-like fibrils in the solid state

We have described here the self-assembling properties of the synthetic tripeptides Boc-Ala(1)-Aib(2)-Val(3)-OMe 1, Boc-Ala(1)-Aib(2)-Ile(3)-OMe 2 and Boc-Ala(1)-Gly(2)-Val(3)-OMe 3 (Aib=α-amino isobutyric acid, β-Ala=β-alanine) which have distorted β-turn conformations in their respective crystals. These turn-forming tripeptides self-assemble to form supramolecular β-sheet structures through intermolecular hydrogen bonding and other noncovalent interactions. The scanning electron micrographs of these peptides revealed that these compounds form amyloid-like fibrils, the causative factor for many neurodegenerative diseases including Alzheimer's disease, Huntington's disease and Prion-related encephalopathies.     

Protein adsorption onto an inorganic microfiltration membrane: Solute–solid interactions and surface coverage

The mass of γ-globulin deposited onto an Anodisc^® alumina membrane with a nominal pore diameter of 0.1 μm has been measured at several concentrations and pH. This deposition resulted from filtering through the membrane in a continuous recirculation device.The low concentration deposition can be assigned mainly to adsorption, that can be studied as a function of the electrostatic forces between the solute and the membrane. A sharp maximum in the adsorbed mass for zero electrostatic force was obtained. At high concentrations, accumulation (non-adsorptive deposition) has also to be taken into account at alkaline pH as confirmed by flux decay experiments and retention measurements.The irreversible deposition (understanding irreversible as referring to deposition that do not disappear when the flux through the membrane stops) has been studied by imaging the surface of the membrane after filtration using atomic force microscopy (AFM). These images give insights into how and where adsorption takes place.     

Solid-state electrochemical,X-ray and spectroscopic characterization of substitutional solid solutions of iron–copper hexacyanoferrates

Copper and iron hexacyanoferrate form a continuous series of substitutional solid solutions, which have been studied by solid-state electrochemistry, X-ray powder diffraction, IR and ESR spectroscopy. All methods unambiguously prove the formation of solid solutions. The results show the different capabilities of these techniques to study such systems. Especially in the case of poor crystallinity and strongly magnetically interacting metal ions, voltammetry of immobilized microparticles offers a powerful tool for the determination of the composition and properties of solid solutions.     

Physicochemical investigation of cobalt–iron cyanide nanoparticles synthesized by a novel solid–solid reaction in confined space

Cobalt–iron cyanide (Co_x[Fe(CN)₆]) nanoparticles have been synthesized by a novel solid–solid reaction in the confined space of dry sodium bis(2-ethylhexyl)sulfosuccinate (AOT) reversed micelles dispersed in n-heptane. The reaction has been carried out by mixing two dry AOT/n-heptane solutions containing CoCl₂ and K₄Fe(CN)₆ or K₃Fe(CN)₆ nanoparticles in the micellar core, respectively. By UV-Vis spectroscopy it was ascertained that, after the mixing process, the formation of stable nanoparticles is fast and complete. Microcalorimetric measurements of the thermal effect due to the Co_x[Fe(CN)₆] nanoparticle formation allowed the determination of the stoichiometric ratio (x) and of the molar enthalpy of reaction in the core of AOT reversed micelles. The observed behavior suggests the occurrence of confinement effects and surfactant adsorption on the nanoparticle surface. Further structural information was achieved by small-angle X-ray scattering (SAXS) measurements. From all liquid samples, interesting salt/AOT composites were prepared by simple evaporation of the apolar solvent. Size, crystal structure, and electronic properties of Co_x[Fe(CN)₆] nanoparticles containing composites were obtained by wide-angle X-ray scattering (WAXS) and X-ray photoelectron spectroscopy (XPS).     

A bond-valence approach to the semicoordination of copper-oxygen and copper–nitrogen complexes

Bond valence as the function of inter-nuclear distance for Cu–O and Cu–N bonds were estimated. Based on the developed bond-valence theory a mutual dependence between the bond length in copper coordination sphere with chromophores CuO₆, CuO₅, CuN₆ and CuN₄O₂ has been derived and compared with the experimental structural correlations. The discontinued transition from chemical bonding to the nonbonding state in the direction of the elongated bond was estimated. The shortest bond lengths are dependent on the copper atom valence. The supreme manifestation of coordination sphere plasticity is estimated as semicoordination. The semicoordinative Cu–O and Cu–N bonds are 3.07 and 2.78 Å long.     

Amino acid derivatives of perylenediimide and their N-H···O peptide bond dipoles-templated solid state assembly into stacks

A methodology is proposed to provide direct access in good yields to peptide residues-appended perylenediimides PDI-(Cl(4))-[Gly-Ala(OEt)](2), 2a, PDI-(Cl(4))-[Gly-Val(OEt)](2), 2b and PDI-(Cl(4))-[Gly-Gly(OEt)](2), 2c from a generic perylenediimide (PDI) platform symmetrically functionalized with carboxylic acids at the imide sites, PDI-(Cl(4))-[Gly(OH)](2), 1. The latter is obtained in good purity by a non classical two-steps route avoiding the many, notoriously cumbersome successive chromatography steps typical of PDI chemistry, and including a single final purification allowing to crystallize the water soluble pure diacid 1, of great interest in its own right for further developments in a variety of fields. Then, the synthesis, crystallization and analysis of the crystal structures of 2a and 2b reveal a common pattern of self-assembly of the outer peptide residues based on collections of parallel N-H···O peptidic hydrogen bonds running alongside stacks where the constraints imposed upon on the inner PDI skeletons by long range interaction of these parallel electric dipoles reduce the dihedral angles around the bay regions by as much as 11% down to 32°.     

Gas–solid interactions in the hydrogen/single-walled carbon nanotube system

Gas–solid interactions between hydrogen and single-walled carbon nanotubes (SWNTs) were investigated using highly purified SWNTs. The activation energy of hydrogen desorption, measured to be 0.21 eV, indicates that hydrogen is physisorbed in the pores and that inter-tube pores have an adsorption potential of about −0.21 eV, which induces hydrogen physisorption at ambient temperature. The total amount of adsorbed hydrogen, about 0.3 wt% at 9 MPa, shows that 38% of the inter-tube sites are occupied. These findings are interpreted in terms of the chemical potential of hydrogen and the adsorption potential of the inter-tube pores.     

A theoretical study of the copper–cysteine bond in blue copper proteins

 The accuracy of theoretical calculations on models of the blue copper proteins is investigated using density functional theory (DFT) Becke's three-parameter hybrid method with the Lee–Yang–Parr correlation functional (B3LYP) and medium-sized basis sets. Increasing the basis set to triple-zeta quality with f-type functions on all heavy atoms and enlarging the model [up to Cu(imidazole-CH₃)₂(SC₂H₅) (CH₃SC₂H₅)^0/+] has only a limited influence on geometries and relative energies. Comparative calculations with more accurate wave-function–based methods (second-order M?ller–Plesset perturbation theory, complete-active-space second-order perturbation theory, coupled-cluster method, including single and double replacement amplitudes and in addition triple replacement perturbatively) and a variety of basis sets on smaller models indicate that the DFT/B3LYP approach gives reliable results with only a small basis set dependence, whereas the former methods strongly depend on the size of the basis sets. The effect of performing the geometry optimizations in a continuum solvent is quite small, except for the flexible Cu-S_Met bond. The results of this study confirm the earlier results that neither the oxidized nor the reduced copper site in the blue proteins is strained to any significant degree (in energy terms) by the protein surrounding. Received: 7 July 2000 / Accepted: 17 November 2000 / Published online: 21 March 2001     

Consideration of dipole–quadrupole interactions in molecular based equations of state

The thermodynamic behaviour of a number of real substances is determined by dipolar as well as quadrupolar interactions of the molecules. In equations of state (EOS) like, e.g. BACKONE separate contributions to the Helmholtz energy for the dipolar and the quadrupolar interactions are considered but no cross contributions. Here, the concept of effective dipole and quadrupole contributions is suggested in which the effective dipole strength μ_e is influenced by the quadrupole cross interaction. Similarily, the effective quadrupole strength Q_e takes into account the dipole cross interaction. In order to arrive at these effective dipolar and quadrupolar strengths, molecular simulations are performed. From the simulation results correlation equations are derived which are used in combination with BACKONE for the calculation of vapour–liquid equilibria (VLE) of real mixtures. By using these effective moments, the only required binary mixing rule parameter k_ij tends to small values of about 0.01 and becomes temperature-independent. Moreover, the VLE pressures are predicted now considerably better than without consideration of the cross contributions.     

Formation and stability of cellulose–copper–NaOH crystalline complex

We investigated the crystal structure of alkali-celluloses, Na-cellulose IIA and II(Cu), formerly known as Na-cellulose IIB, by synchrotron X-ray diffraction. Na-cellulose IIA, formed from cellulose I by high-concentration NaOH treatment, has a fiber repeat of 15 Å and a threefold-like helical conformation. Na-cellulose II(Cu), prepared by treating cellulose I with copper-saturated alkali solution, also has a fiber repeat of 15 Å with threefold helical symmetry. Incorporation of Cu(II) ions into cellulose was confirmed by multiwavelength anomalous diffraction. Monitoring by X-ray diffraction revealed that the formation of this complex from cellulose I is remarkably slow, probably because of the involvement of copper ion. The stability of alkali-cellulose II(Cu) was tested to estimate the influence of the presence of copper in the crystal. Na-cellulose II(Cu) characteristically dissolved in aqueous ammonia solution, indicating strong coordination of copper ion to cellulose.     

Radiodegradation of nadolol in the solid state and identification of its radiolysis products by UHPLC–MS method

Nadolol ((2R*,3S*)-5-{[(2R*)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-1,2,3,4 tetrahydronaphthalene-2,3-diol) in substantia was exposed to ionizing radiation generated by a beam of high-energy electrons in an accelerator, in the standard sterilisation dose of 25 kGy and in higher doses of 50 ? 400 kGy. The irradiated and non-irradiated (control) samples were analysed by the infrared spectrophotometry, electron paramagnetic resonance, differential scanning calorimetry (DSC) and ultra-high performance liquid chromatography coupled with mass spectrometry (UHPLC–MS). The irradiated samples were found to contain free radicals in concentrations much higher than that observed for the other irradiated β-blockers. On the basis of UHPLC–MS results, it was possible to establish structures of 11 compounds of the impurities and/or products of nadolol decomposition. The main product of radiodegradation was concluded to be formed as a result of abstraction of the hydroxyl group and aromatization of the tetrahydronaphthalene ring. The results of DSC measurements confirmed the presence of radiolysis products in the irradiated samples of nadolol. A shift of the endothermic peak corresponding to melting towards lower temperatures (by 4.4 °C at the dose of 400 kGy) was directly proportional to the doses of radiation used, which permits concluding that this method is sensitive and suitable for evaluation of radiodegradation of nadolol in solid phase.     

Phase equilibria in the solid state and colour properties of the CuO–In2O3 system

Phase equilibria up to solidus line in CuO?CIn₂O₃ system have been investigated using XRD and DTA/TG methods. According to the results, only one compound of the formula Cu₂In₂O₅ formed in the system studied. Its thermal stability was determined in the air and argon proving that the compound did not melt but underwent decomposition. The decomposition of Cu₂In₂O₅ in the air atmosphere began at 1080?°C, while in argon at 835?°C. Additional studies were undertaken to determine the hitherto unknown colour properties of samples representing the CuO?CIn₂O₃ system in the equilibrium state.     

Carbohydrate–protein interactions and their biosensing applications

Carbohydrate recognition is clearly present throughout nature, playing a major role in the initial attachment of one biological entity to another. The important question is whether these prevalent interactions could provide a real suitable alternative to the use of antibodies or nucleic acid for detection and identification. Currently, examples of carbohydrates being employed in biological detection systems are limited. The challenges of using carbohydrate recognition for detection mainly come from the weak affinity of carbohydrate–protein interactions, the lack of versatile carbohydrate scaffolds with well-defined structures, and the less developed high-information-content, real-time, and label-free assay technology. In this review, we focus on discussing the characteristics of carbohydrate–protein interactions in nature and the methods for carbohydrate immobilization based on surface coupling chemistry in terms of their general applicability for developing carbohydrate- and lectin-based label-free sensors. Furthermore, examples of innovative design of multivalent carbohydrate–protein interactions for sensor applications are given. We limit our review to show the feasibility of carbohydrate and lectin as recognition elements for label-free sensor development in several representative cases to formulate a flexible platform for their use as recognition elements for real-world biosensor applications.