Spatial distributions and interstellar reaction processes

Methyl formate presents a challenge for the conventional chemical mechanisms assumed to guide interstellar organic chemistry. Previous studies of potential formation pathways for methyl formate in interstellar clouds ruled out gas-phase chemistry as a major production route, and more recent chemical kinetics models indicate that it may form efficiently from radical-radical chemistry on ice surfaces. Yet, recent chemical imaging studies of methyl formate and molecules potentially related to its formation suggest that it may form through previously unexplored gas-phase chemistry. Motivated by these findings, two new gas-phase ion-molecule formation routes are proposed and characterized using electronic structure theory with conformational specificity. The proposed reactions, acid-catalyzed Fisher esterification and methyl cation transfer, both produce the less stable trans-conformational isomer of protonated methyl formate in relatively high abundance under the kinetically controlled conditions relevant to interstellar chemistry. Gas-phase neutral methyl formate can be produced from its protonated counterpart through either a dissociative electron recombination reaction or a proton transfer reaction to a molecule with larger proton affinity. Retention (or partial retention) of the conformation in these neutralization reactions would yield trans-methyl formate in an abundance that exceeds predictions under thermodynamic equilibrium at typical interstellar temperatures of ≤100 K. For this reason, this conformer may prove to be an excellent probe of gas-phase chemistry in interstellar clouds. Motivated by new theoretical predictions, the rotational spectrum of trans-methyl formate has been measured for the first time in the laboratory, and seven lines have now been detected in the interstellar medium using the publicly available PRIMOS survey from the NRAO Green Bank Telescope.     

Controllability and observability of the photophysical system of intermolecular two-state excited-state processes

In this report, we focus on the consequences of controllability and observability on the number of distinct exponential terms in the fluorescence decay and on the identifiability analysis of the photophysical model of intermolecular two-state excited-state processes. Controllability and observability prove to be useful concepts in photophysics for exploring methodically the conditions under which intermolecular two-state excited-state processes lead to single-exponential fluorescence delta-response functions. A detailed discussion on the distinction of the possible origins of monoexponential fluorescence decays is presented. We also show that the similarity transformation approach to identifiability leads to erroneous conclusions concerning which model parameters can be identified if this photophysical system is not controllable or not observable. The results obtained for this relatively simple photophysical system can be extended in a systematic way to more complicated photophysical models.     

New water-soluble organic capsules are effective in controlling excited-state processes of guest molecules

Synthesis, inclusion properties, and ability to control excited-state properties of two water-soluble hosts are presented. These hosts surround the guest molecule(s) by forming a capsular assembly. By constraining the guest and by providing very little free space, the host is able to alter the excited-state behavior of guest molecules. The excited-state chemistry and physics of guest molecules are distinctly different from those in organic solvents.     

Role of electron-driven proton-transfer processes in the excited-state deactivation of the adenine-thymine base pair

Exploratory electronic structure calculations have been performed with the CC2 (simplified singles and doubles coupled-cluster) method for two conformers of the adenine (A)-thymine (T) base pair, with emphasis on excited-state proton-transfer reactions. The Watson-Crick conformer and the most stable (in the gas-phase) conformer of the A-T base pair have been considered. The equilibrium geometries of the ground state and of the lowest excited electronic states have been determined with the MP2 (second-order M?ller-Plesset) and CC2 methods, respectively. Vertical and adiabatic excitation energies, oscillator strengths, and dipole moments of the excited states are reported. Of particular relevance for the photochemistry of the A-T base pair are optically dark (1)pipi* states of charge-transfer character. Although rather high in energy at the ground-state equilibrium geometry, these states are substantially lowered in energy by the transfer of a proton, which thus neutralizes the charge separation. A remarkable difference of the energetics of the proton-transfer reaction is predicted for the two tautomers of A-T: in the Watson-Crick conformer, but not in the most stable conformer, a sequence of conical intersections connects the UV-absorbing (1)pipi* state in a barrierless manner with the electronic ground state. These conical intersections allow a very fast deactivation of the potentially reactive excited states in the Watson-Crick conformer. The results provide evidence that the specific hydrogen-bonding pattern of the Watson-Crick conformer endows this structure with a greatly enhanced photostability. This property of the Watson-Crick conformer of A-T may have been essential for the selection of this species as carrier of genetic information in early stages of the biological evolution.     

Photochemical reactions of hypericin with alcohols and albumins. Kinetics and mechanism of the primary processes

The photochemical reactions of the hypericin sodium salt with alcohols and albumins yielding the corresponding semiquinone radical were studied by means of microsecond and nanosecond pulse photolysis. The decay of the semiquinone radical follows the second-and first-order rate law for alcohol solutions and the NaHY-albumin system, respectively. The lifetime and the yield of the semiquinone radical decrease in the presence of oxygen. In the oxygen-saturated solutions, the lifetime of the semiquinone radical increases with an increase in the albumin concentration in the solution from 1 to 50 mg/ml. This effect is caused by a decrease in the reactivity of the semiquinone radical toward oxygen due to the steric hindrance created by albumin and is not associated with an increase in the solvent viscosity.     

Nonlinear optical properties of tetrapyrazinoporphyrazinato indium chloride complexes due to excited-state absorption processes

The multiphoton absorption properties of the axially substituted tetrapyrazinotetraazaporphyrinato complex Pyz(4)TAPInCl (1) are reported and interpreted. In particular, the nonlinear optical transmission of the complex and the excited states involved in the nonlinear absorption have been determined at the frequency of the second harmonic generation of a Nd:YAG laser in the nanosecond time regime. Pyz(4)TAPInCl has an excited-state absorption cross section larger than its ground state in the 460-540 nm spectral region, and it shows an optical limiting (OL) behavior at 532 nm, which derives from a sequential two-photon absorption with a larger absorption cross section of the excited triplet state with respect to the ground state. It results that the absorption cross section of 1 in the excited triplet state is 7.8 x 10(-18) cm(2) vs 0.9 x 10(-18) cm(2) of the ground state at the wavelength of OL analysis.     

Analyzing excited-state processes and optical signatures of a ratiomeric fluorine anion sensor: a quantum look

Recently, the spectroscopic signatures of a benzoselenadiazole derivative have been investigated in the framework of designing a new ratiometric fluoride sensor(Saravanan et al., Org Lett, 2014, 16: 354–357). It was suggested that this sensor is undergoing excited-state intramolecular proton transfer. In this work, we provide a new look at these experimental data, using a state-of-the-art time-dependent density functional theory approach to mimic the spectroscopic signatures. New insights about the nature of the excited-state processes are obtained.     

Adiabatic passage in a three-state system with non-Markovian relaxation: the role of excited-state absorption and two-exciton processes

The influence of excited-state absorption (ESA) and two-exciton processes on a coherent population transfer with intense ultrashort chirped pulses in molecular systems in solution has been studied. A unified treatment of adiabatic rapid passage (ARP) in such systems has been developed using a three-state electronic system with relaxation treated as a diffusion on electronic potential energy surfaces. We have shown that ESA has a profound effect on coherent population transfer in large molecules that necessitates a more accurate interpretation of experimental data. A simple and physically clear model for ARP in molecules with three electronic states in solution has been developed by extending the Landau-Zener calculations putting in a third level to random crossing of levels. A method for quantum control of two-exciton states in molecular complexes has been proposed.     

Solvent effects on the excited-state processes of protochlorophyllide: a femtosecond time-resolved absorption study

The excited-state dynamics of protochlorophyllide a, a porphyrin-like compound and, as substrate of the NADPH/protochlorophyllide oxidoreductase, a precursor of chlorophyll biosynthesis, is studied by femtosecond absorption spectroscopy in a variety of solvents, which were chosen to mimic different environmental conditions in the oxidoreductase complex. In the polar solvents methanol and acetonitrile, the excited-state dynamics differs significantly from that in the nonpolar solvent cyclohexane. In methanol and acetonitrile, the relaxation dynamics is multiexponential with three distinguishable time scales of 4.0-4.5 ps for vibrational relaxation and vibrational energy redistribution of the initially excited S1 state, 22-27 ps for the formation of an intermediate state, most likely with a charge transfer character, and 200 ps for the decay of this intermediate state back to the ground state. In the nonpolar solvent cyclohexane, only the 4.5 ps relaxational process can be observed, whereas the intermediate intramolecular charge transfer state is not populated any longer. In addition to polarity, solvent viscosity also affects the excited-state processes. Upon increasing the viscosity by adding up to 60% glycerol to a methanolic solution, a deceleration of the 4 and 22 ps decay rates from the values in pure methanol is found. Apparently not only vibrational cooling of the S1 excited state is slowed in the more viscous surrounding, but the formation rate of the intramolecular charge transfer state is also reduced, suggesting that nuclear motions along a reaction coordinate are involved in the charge transfer. The results of the present study further specify the model of the excited-state dynamics in protochlorophyllide a as recently suggested (Chem. Phys. Lett. 2004, 397, 110).     

Spatial distributions of desorbing products in basic catalytic processes and surface nano-structures

Reviews of recent progress in angle-resolved measurements of desorbing surface reaction products are discussed. The angular and velocity distributions of desorbing products deliver information about the reaction site as well as the reaction mechanism when the products are repulsively desorbed. These distribution measurements can yield symmetry and orientation information of the reaction site for associative processes whereas, in dissociative desorption, the collimation of fragment desorption is related to the orientation of the intermediate species immediately before dissociation. These different collimations provide information on desorption steps whenever any step becomes rate determining.     

Bimodal fluorescence signaling based on control of the excited-state conformational twisting and the ground-state protonation processes

Amino-based fluoroionophores 1 and 2 can selectively sense alkaline earth metal ions in MeCN under both neutral and acidic conditions by different signaling mechanisms. The fluoroionophoric behavior for the neutral probes is characterized by an ‘off-on’ photoinduced electron transfer (PET)-like fluorescence intensity response due to a switching from a twisted internal charge transfer (TICT) to a planar internal charge transfer (PICT) state. For the protonated probes (i.e., 1/H⁺ and 2/H⁺), the fluorescing species is the localized stilbene fluorophores, but dual fluorescence is induced upon metal-ion recognition through a deprotonation process.     

Identifiability of models for intramolecular two-state excited-state processes with added quencher and coupled species-dependent rotational diffusion

The parameters describing the kinetics of excited-state processes can possibly be recovered by analysis of the fluorescence decay surface measured as a function of the experimental variables. The identifiability analysis of a photophysical model assuming errorless time-resolved fluorescence data can verify whether the model parameters can be determined and may lead to the minimal experimental conditions under which this is possible. In this work, we used the method of similarity transformation to investigate the identifiability of three kinetic models utilized to describe the time-resolved fluorescence of reversible intramolecular two-state excited-state processes in isotropic environments: (1) model without added quencher, (2) model with added quencher, (3) model with added quencher coupled with species-dependent rotational diffusion described by Brownian reorientation. Without a priori information, model 1 is not identifiable. For model 2, two sets of quenching rate constants and combinations of excited-state deactivation/exchange rate constants are possible, but they cannot be allocated to a specific excited-state species. For both sets, upper and lower limits on the excited-state deactivation/exchange rate constants can be obtained. For model 3, both spherically and cylindrically symmetric rotors, with no change in the principal axes of rotation in the latter, are considered. The fluorescence delta-response functions I(parallel)(t) and I(perpendicular)(t), for fluorescence polarized parallel and perpendicular, respectively, to the electric vector of linearly polarized excitation, are used to define the sum S(t) identically equal to I(parallel)(t) + 2 I(perpendicular)(t) and the difference D(t) identically equal to I(parallel)(t) - I(perpendicular)(t). The identifiability analysis is performed using the S(t) and D(t) functions. Also for model 3, two sets of kinetic parameters (i.e., quenching rate constants, combinations of deactivation/exchange rate constants, and rotational diffusion coefficients) exist, but these parameters cannot be assigned unequivocally to a specific species. For the three models, an infinite number of alternative spectroscopic parameters associated with excitation and emission are found.     

Photocytotoxicity of hypericin in normoxic and hypoxic conditions

The normoxic and hypoxic photocytotoxicity of hypericin has been examined on A431 cells as assessed by the Neutral Red method, using cell-culture flasks made of polystyrene and glass, different hypericin concentrations and light fluences. Using polystyrene flasks, lower hypoxic photoactivities of hypericin than those in normoxic conditions are seen under low fluence. In these conditions the hypoxic photocytotoxic effect can be (partially) rescued by increasing the fluence. However, a completely different outcome is observed when using glass flasks, since most of the hypoxic photocytotoxicity is lost under these conditions. The differences can be explained in terms of efficiency of deoxygenation of the medium present in polystyrene or glass flasks. Polystyrene holds large amounts of oxygen that effuses very slowly. Glass, on the other hand, does not cause this inconvenience. Therefore the type of material of the container used to investigate the oxygen dependency of the photobiological activity of photosensitizers dramatically influences the outcome of the hypoxic experiments. Our results unequivocally prove that the cytotoxic effect induced by photoactivated hypericin is completely oxygen dependent. Hence hypericin does not differ from other phototherapeutics used in photodynamic therapy of cancer, since haematoporphyrin derivative and the second-generation photosensitizers used all seem to depend on the presence of oxygen for their antitumour activity.     

Compartmental modeling of reversible intermolecular two-state excited-state processes coupled with rotational diffusion or with added quencher

Analysis of related time-resolved fluorescence measurements can possibly lead to the determination of the kinetic parameters of excited-state processes. A deterministic identifiability analysis on an error-free fluorescence decay data surface has to be executed to verify whether the parameters of a particular model can be determined and may point to the minimal experimental conditions under which this will become possible. In this work, similarity transformation is chosen as an identifiability analysis approach because it also gives the explicit relationships between the true and alternative model parameters. Results are presented for two kinetic models of a reversible intermolecular two-state excited-state process in isotropic environments: (a) with coupled species-dependent rotational diffusion described by Brownian reorientation and (b) with added quencher. For model a, both spherically and cylindrically symmetric rotors, with no change in the principal axes of rotation in the latter, are considered. The fluorescence delta-response functions I(parallel)(t) and I(perpendicular)(t), for fluorescence polarized respectively parallel and perpendicular to the electric vector of linearly polarized excitation, are used to define the sum S(t) = I( parallel)(t) + 2 I( perpendicular)(t) and the difference D(t) = I(parallel)(t) - I(perpendicular)(t) function. The identifiability analysis is carried out using the S(t) and D(t) functions. The analysis involving S(t) shows that two physically acceptable possible solutions for the overall rate constants of the excited-state process exist. Inclusion of information from polarized fluorescence measurements on the rotational kinetic behavior contained in D(t) results in the unique set of rate constants and rotational diffusion coefficients when the rotational diffusion coefficients are different. For model b, it is shown that addition of quencher plays formally the same role as rotational diffusion as far as the identification is concerned. When the quenching rate constants are different, the rate constants of a reversible intermolecular two-state excited-state process with added quencher can be uniquely determined.     

Meta-conjugation and excited-state coupling in phenylacetylene dendrimers

Traditional pictures of optical properties in phenylacetylene dendrimers view the molecule as a collection of independent chromophores, linked by meta-substitution at the central phenyl ring. While this picture is reasonable for explaining the observed absorption trends, it breaks down in describing the emission behavior. We utilize a combination of ab initio theory and experiment to demonstrate that differences in the absorbing and emitting states can be described using an exciton model with very weak chromophore coupling for the absorption geometry and strong coupling for the emission geometry. This result may have significant implications for the design of energy-funneling dendrimeric molecules.     

Anti-cancer activities of hypericin in the dark

The potent photodynamic properties of hypericin (HY) elicit a range of light-dependent virucidal and tumoricidal activities. Yet, a relatively low reduction/oxidation potential endows HY with electron accepting and donating properties enabling it to act as both an oxidizing and a reducing agent. HY can thus compete as an electron acceptor from bioenergized reduction/oxidation reactions generating its excitation energy for biological activities from physiological reduction/oxidation reactions in the absence of light. Our studies show that HY can inhibit the growth of highly metastatic murine breast adenocarcinoma and squamous cell carcinoma tumors in culture. Furthermore, we show that HY can interfere with the growth of these tumors in mice reducing tumor size and prolonging animal survival in complete absence of light. While there is no evidence that HY induces apoptosis in these cells in the dark, 3H-thymidine incorporation into DNA was significantly reduced indicating effects that are apparently cytostatic in nature compared to the cytocidal effects of HY with light.     

On the homo- and heteroassociation of hypericin

Summary Hypericin exhibits rather complicated homo- and heteroassociation behavior. Whereas in common polar solvents hypericin dissolves monomolecularly up to concentrations of 10^–3 mol/l, the presence of water in these solvents leads to homoassociation. As derived by spectroscopic measurements, these homoassociates exhibit a stacking pattern similar to the one observed for the crystalline material. Tetrahydrofuran seems to be an exception, as it is the only solvent which results in 1,6-dioxo tautomer formation. Heteroassociation of hypericin involves two distinct types of behavior. In the majority of cases, hypericin forms homoassociates which then heteroassociate with the co-solvate to yield stabilized solutions of these homoassociates. Only with human serum albumin a specific heteroassociate is formed. By means of competition experiments it could be established that hypericin is binding to the active site of the IIIA subdomain of the protein.Dedicated to Prof. Dr.Karl Schlöpl on the occasion of his 70th birthday     

Electronic excited-state mixing in NeCl2

Ab initio calculations that explicitly include spin-orbit interactions are reported for the NeCl2 system of electronic states. A surprising curve crossing is observed for the C2v, T-shaped geometry. Away from the C2v geometry, the states mix, as expected. On the basis of these new results we propose a new mechanism for electronic energy transfer from highly vibrationally excited levels of the B electronic state of the chlorine molecule. It is proposed that as long as vibrational predissociation of NeCl2 proceeds by direct coupling of the initial state to the continuum states the Ne atom does not sample geometries that efficiently quench the Cl2 B electronic state. However, when the vibrational dynamics changes to the intramolecular vibrational relaxation regime the Ne atom becomes quite effective at coupling the Cl2 B3Pi0u+ state with a 3Pi2g state.     

Ground-state and excited-state structures of tungsten-benzylidyne complexes

The molecular structure of the tungsten-benzylidyne complex trans-W(≡CPh)(dppe)(2)Cl (1; dppe = 1,2-bis(diphenylphosphino)ethane) in the singlet (d(xy))(2) ground state and luminescent triplet (d(xy))(1)(π*(WCPh))(1) excited state (1*) has been studied using X-ray transient absorption spectroscopy, X-ray crystallography, and density functional theory (DFT) calculations. Molecular-orbital considerations suggest that the W-C and W-P bond lengths should increase in the excited state because of the reduction of the formal W-C bond order and decrease in W→P π-backbonding, respectively, between 1 and 1*. This latter conclusion is supported by comparisons among the W-P bond lengths obtained from the X-ray crystal structures of 1, (d(xy))(1)-configured 1(+), and (d(xy))(2) [W(CPh)(dppe)(2)(NCMe)](+) (2(+)). X-ray transient absorption spectroscopic measurements of the excited-state structure of 1* reveal that the W-C bond length is the same (within experimental error) as that determined by X-ray crystallography for the ground state 1, while the average W-P/W-Cl distance increases by 0.04 ? in the excited state. The small excited-state elongation of the W-C bond relative to the M-E distortions found for M(≡E)L(n) (E = O, N) compounds with analogous (d(xy))(1)(π*(ME))(1) excited states is due to the π conjugation within the WCPh unit, which lessens the local W-C π-antibonding character of the π*(WCPh) lowest unoccupied molecular orbital (LUMO). These conclusions are supported by DFT calculations on 1 and 1*. The similar core bond distances of 1, 1(+), and 1* indicates that the inner-sphere reorganization energy associated with ground- and excited-state electron-transfer reactions is small.