A Density Functional Theory (DFT) Quantum‐Chemical Approach to the Real Structure of Poly(methylaluminoxane)

DFT quantum chemical calculations have been performed in order to optimize the geometric and electronic cage structure of poly(methylaluminoxane) (MAO) with oligomerization degree n = 9–15, and to find such structures that fit most closely the existing experimental data on the MAO composition and structure. The following peculiarities of the MAO structure were found: i) In “classic” MAO (n = 9, 12, 15; Al : CH₃ : O = 1 : 1 : 1), which has a triple‐layer cage structure, the inner layer contains highly reactive Al‐O bonds. ii) The reaction between “classic MAO” and trimethylaluminium (TMA) proceeds by the concerted mechanism, with the insertion of Al‐CH₃ groups into these Al‐O bonds producing “true” MAO (Al : CH₃ : O = 1 : 1.5 : 0.75). The calculated geometric and electronic structures of “true” MAO with n = 6, 9, 12 are presented. iii) “True” MAO and “classic” MAO exist in equilibrium. The driving force for the formation of “true” MAO is the decrease in enthalpy, and of “classic” MAO the increase in entropy, in the equilibrium reaction between “classic” MAO and TMA.     

Cl原子与CH2SH自由基反应机理及电子密度拓扑研究

采用MP2(Full)/6-311G(d,p)和B3LYP/6-311G(d,p)找到了反应Cl＋CH₂SH→HCl＋CH₂S的两个可能的反应通道, 得到了各反应通道的反应物、中间体、过渡态和产物的优化构型、谐振频率. 对反应进程中若干关键点进行了电子密度拓扑分析, 讨论了反应进程中键的断裂、生成和化学键的变化规律, 找到了该反应的结构过渡区(结构过渡态)和能量过渡态, 发现了反应热与结构过渡区之间的关系.     

Metal-Boron Compounds – Problems and Perspectives

“True” metal-boron compounds have been known for about ten years. The bonding between the metal and boron atoms can vary widely in nature: Not only simple covalent bonds are encountered but also coordinate bonds and boron-metal multicenter bonds. Furthermore, π complexes of transition metals with boron-nitrogen systems and metal complexes containing boron(I) compounds as ligands have recently also been prepared.     

CH2XH→CH3X (X＝O, S, Se)异构化的量子拓扑研究

利用从头算和量子拓扑方法讨论了CH₂XH→CH₃X (X＝O, S, Se)异构化过程的反应机理. 着重从电子密度拓扑分析计算了反应进程中的各点, 讨论了反应进程中键的断裂和生成, 上述反应都经历了三元环过渡结构, 找到了这类反应的"能量过渡态"和"结构过渡态", 且结构过渡态均在能量过渡态之后出现. 三元结构过渡态结构出现的范围与反应热成正比.     

Synthesis,Properties, and Dispersion of Few‐Layer Graphene Fluoride

We have fluorinated few‐layer graphene (FLG) by using a low‐temperature fluorination route with gaseous ClF₃. The treatment process resulted in a new graphene derivative with a finite approximate composition of C₂F. TEM studies showed that the product consisted of thin transparent sheets with no more than 10 fluorographene layers stacked together. Spectroscopic methods revealed a predominantly covalent nature of the C? F bonds in the as‐synthesized product and we found no evidence for the existence of so‐called “semi‐ionic” C? F bonds, as observed in bulk C_xF. In contrast to the case of graphite and typical (thick) expanded graphites, fluorination of FLG did not lead to the intercalation of ClF₃ molecules, owing to the lack of a 3D layered structure. The approximate “critical” number of graphene layers that were necessary to form a phase of intercalated compound was estimated to be more than 12, thus providing a “chemical proof” of the difference between the properties of few‐layered graphenes and bulk graphites. Fluorographene C₂F was successfully delaminated into thinner layers in organic solvents, which is an important property for its integration into electronic devices, nanohybrids, etc.     

Superelectrophilic Behavior of an Anion Demonstrated by the Spontaneous Binding of Noble Gases to [B12Cl11]−

It is common and chemically intuitive to assign cations electrophilic and anions nucleophilic reactivity, respectively. Herein, we demonstrate a striking violation of this concept: The anion [B₁₂Cl₁₁]⁻ spontaneously binds to the noble gases (Ngs) xenon and krypton at room temperature in a reaction that is typical of “superelectrophilic” dications. [B₁₂Cl₁₁Ng]⁻ adducts, with Ng binding energies of 80 to 100 kJ mol⁻¹, contain B−Ng bonds with a substantial degree of covalent interaction. The electrophilic nature of the [B₁₂Cl₁₁]⁻ anion is confirmed spectroscopically by the observation of a blue shift of the CO stretching mode in the IR spectrum of [B₁₂Cl₁₁CO]⁻ and theoretically by investigation of its electronic structure. The orientation of the electric field at the reactive site of [B₁₂Cl₁₁]⁻ results in an energy barrier for the approach of polar molecules and facilitates the formation of Ng adducts that are not detected with reactive cations such as [C₆H₅]⁺. This introduces the new chemical concept of “dipole-discriminating electrophilic anions.”     

Observing the 3D Chemical Bond and its Energy Distribution in a Projected Space

Our curiosity-driven desire to “see” chemical bonds dates back at least one-hundred years, perhaps to antiquity. Sweeping improvements in the accuracy of measured and predicted electron charge densities, alongside our largely bondcentric understanding of molecules and materials, heighten this desire with means and significance. Here we present a method for analyzing chemical bonds and their energy distributions in a two-dimensional projected space called the condensed charge density. Bond “silhouettes” in the condensed charge density can be reverse-projected to reveal precise three-dimensional bonding regions we call bond bundles. We show that delocalized metallic bonds and organic covalent bonds alike can be objectively analyzed, the formation of bonds observed, and that the crystallographic structure of simple metals can be rationalized in terms of bond bundle structure. Our method also reproduces the expected results of organic chemistry, enabling the recontextualization of existing bond models from a charge density perspective.     

Covalently Binding of Bovine Serum Albumin to Unsaturated Poly(Globalide‐Co‐ε‐Caprolactone) Nanoparticles by Thiol‐Ene Reactions

When nanoparticles (NPs) are introduced to a biological fluid, different proteins (and other biomolecules) rapidly get adsorbed onto their surface, forming a protein corona capable of giving to the NPs a new “identity” and determine their biological fate. Protein–nanoparticle conjugation can be used in order to promote specific interactions between living systems and nanocarriers. Non‐covalent conjugates are less stable and more susceptible to desorption in biological media, which makes the development of engineered nanoparticle surfaces by covalent attachment an interesting topic. In this work, the surface of poly(globalide‐co‐ε‐caprolactone) (PGlCL) nanoparticles containing double bonds in the main polymer chain is covalently functionalized with bovine serum albumin (BSA) by thiol‐ene chemistry, producing conjugates which are resistant to dissociation. The successful formation of the covalent conjugates is confirmed by flow cytometry (FC) and fluorescence correlation spectroscopy (FCS). Transmission electron microscopy (TEM) allows the visualization of the conjugate formation, and the presence of a protein layer surrounding the NPs can be observed. After conjugation with BSA, NPs present reduced cell uptake by HeLa and macrophage RAW264.7 cells, in comparison to uncoated NP. These results demonstrate that it is possible to produce stable conjugates by covalently binding BSA to PGlCL NP through thiol‐ene reaction.     

Explanation of Ionic Sequences in Various Phenomena. VI. The Formation and Destruction of Helices in Bovine Plasma Albumin in Neutral and Acidic Solutions

Abstract

The structure of bovine plasma albumin (BPA) was examined by optical rotatory dispersion studies at both low (pH 1.5 and 2.0) and high (pH 9.0) pH values in various aqueous salt solutions. The resulting cationic sequences were compared to those observed by Pedersen for values of the sedimentation constant. At pH 9.0 the destruction of the “helix” produces an acidic sequence. The relative pH position of the “helix” transition, the fact that addition of salt increases the apparent helical content of BPA, and the observed acidic-type of sequence rule out the possibility of (1)ionic bonds between carboxylate and ?-amino groups, (2) hydrophobic bonds, or (3) hydrogen bonds between peptide linkages as major contributing forces in the formation of the helix. The stability of the “helix” in BPA between pH 3.0 and 9.0 must therefore be due to hydrogen bonds between carboxylate ions and hydroxyl groups such as those of serine, threonine, and tyrosine. Repulsive forces between the positively charged groups on BPA strengthen these bonds by preventing the expanded form of BPA from collapsing. At pH 2.0 two types of sequences were observed: The s⁰ _{20, w}, [α]_D and a₀ values gave an acidic-type cationic sequence. The b₀ (helix content), λ_c and [λ]₂₃₃ values gave essentially a nonpolar sequence. The nonpolar or hydrophobic salting-out sequences show that the formation of hydrophobic bonds at pH 2.0 hinders the formation of the helix or folded structure. The acidic sequences show that hydrogen bonds between carboxylic acid groups stabilize both the apparent helix or helices and the intermolecular aggregation of the BPA molecules. From a comparison of the S⁰ ₂₀,w values and the helical content of BPA at pH 9.0 it is also concluded that the formation of these apparent helices or folded structures expands or stiffens the BPA molecule.     

Neighboring Molecular Engineering in Diels–Alder Chemistry Enabling Easily Recyclable Carbon Fiber Reinforced Composites

Although a variety of dynamic covalent bonds have been successfully used in the development of diverse sustainable thermosetting polymers and their composites, solving the trade-off between recovery efficiency and comprehensive properties is still a major challenge. Herein, a “one-stone-two-birds” strategy of lower rotational energy barrier (E_r) phosphate-derived Diels–Alder (DA) cycloadditions was proposed for easily recyclable carbon fiber (CF)-reinforced epoxy resins (EPs) composites. In such a strategy, the phosphate spacer with lower E_r accelerated the segmental mobility and dynamic DA exchange reaction for network rearrangement to achieve high-efficiency repairing, reprocessing of the EPs matrix and its composites and rapid nondestructive recycling of CF; meanwhile, incorporating phosphorus-based units especially reduced their fire hazards. The resulting materials simultaneously showed excellent thermal/mechanical properties, superb fire safety and facile recyclability, realizing the concept of recycling for high-performance thermosetting polymers and composites. This strategy is of great significance for understanding and enriching the molecular connotation of DA chemistry, making it potentially applicable to the design and development of a wide range of dynamic covalent adaptable materials toward practical cutting-edge-tech applications.     

Recent advances in electrochemistry of pyridinium-based electrophores: A structronic approach

The context of molecular structronics (from “molecular structure” and “electronics”) is that of molecular-level electrochemical storage of energy of sustainable origin (wind, solar). Due to its discontinuous availability, storage of this energy is a key issue. The targeted type of storage relies on implementing “electron reservoirs” within the structronic molecules by electrochemically forming dedicated chemical bonds according to non-catalytic processes. Reservoir bonds are therefore integral parts of the molecular backbone of structronic assemblies. When filled, electron reservoirs manifest themselves in the form of elongated covalent bonds that are to be cleaved for electron releasing (discharging) on demand. The scope of this short review is limited to pyridinium electrophores as particularly suited building blocks for the development of structronics.     

Comparing Ullmann Coupling on Noble Metal Surfaces: On‐Surface Polymerization of 1,3,6,8‐Tetrabromopyrene on Cu(111) and Au(111)

The on‐surface polymerization of 1,3,6,8‐tetrabromopyrene (Br₄Py) on Cu(111) and Au(111) surfaces under ultrahigh vacuum conditions was investigated by a combination of scanning tunneling microscopy (STM), X‐ray photoelectron spectroscopy (XPS) and density functional theory (DFT) calculations. Deposition of Br₄Py on Cu(111) held at 300 K resulted in a spontaneous debromination reaction, generating the formation of a branched coordination polymer network stabilized by C?Cu?C bonds. After annealing at 473 K, the C?Cu?C bonds were converted to covalent C?C bonds, leading to the formation of a covalently linked molecular network of short oligomers. In contrast, highly ordered self‐assembled two‐dimensional (2D) patterns stabilized by both Br?Br halogen and Br?H hydrogen bonds were observed upon deposition of Br₄Py on Au(111) held at 300 K. Subsequent annealing of the sample at 473 K led to a dissociation of the C?Br bonds and the formation of disordered metal‐coordinated molecular networks. Further annealing at 573 K resulted in the formation of covalently linked disordered networks. Importantly, we found that the chosen substrate not only plays an important role as catalyst for the Ullmann reaction, but also influences the formation of different types of intermolecular bonds and thus, determines the final polymer network morphology. DFT calculations further support our experimental findings obtained by STM and XPS and add complementary information on the reaction pathway of Br₄Py on the different substrates.     

50 Years of Hydrogen Bond Theory

The “hydrogen bond” or “hydrogen bridge” concept has proved to be one of the most useful structural concepts in modern science. The properties of substances containing hydrogen bonds depend on the strength, symmetry, and polarity of these bonds. These characteristics, in turn, are related to the effective electronegativities of the bridgehead atoms, the distance between these atoms, and the degree of coupling with other hydrogen bonds. Symmetrical hydrogen bonds exist in the FHF^? and H₅O ions and in some acidic compounds. Coupled hydrogen bond systems exist, for example, in ice, liquid water, hydroquinone clathrates, starch, cellulose, polypeptides, nucleic acids, KH₂PO₄, and silicate hydrates. It is suggested that systems of coupled, nearly symmetrical, hydrogen bonds should be interesting subjects of further research.     

Pyrazolyc 3-hydroxychromones: Regulation of ESIPT reaction by the “flavonol-like” intramolecular hydrogen bonding to carbonyl group oxygen,which dominates over the “alternative” H-bond to heterocyclic nitrogen

Two isomeric pyrazole derivatives of 3-hydroxychromone (3HC) with and without the possibility of the multiple intramolecular hydrogen bonds formation were compared theoretically and experimentally with the aim to find out whether the excited state intramolecular proton transfer (ESIPT) reaction follows the traditional to the most of 3HCs “flavonol-like” direction towards the CO group oxygen or an “alternative” direction towards the heterocyclic nitrogen atom.Quantum-chemical modeling and comparative study of the experimental spectral parameters of the title compounds indicated the preferential realization of “flavonol-like” ESIPT to oxygen channel.The 3HC systems with the “alternative” intramolecular hydrogen bond to nitrogen were characterized as low fluorescent and practically unable to ESIPT with participation of the nitrogen containing heterocyclic unit.     

A brief review on formation of (H2O)n clusters in supramolecular proton transfer compounds and their complexes

“Water clusters”, group of water molecules held together by hydrogen bonds, have been the subject of a number of intense experimental and theoretical investigations because of their importance in understanding cloud and ice formation, solution chemistry, and a large number of biochemical processes. “Water clusters” can play an important role in the stabilization of supramolecular systems both in solution and in the solid state and there is clearly a need for chemists a better understanding of how such aggregates influence the overall structure of their surroundings. The present brief review deals with (H₂O)_n clusters, identified/observed crystallographically upon 170 crystal structures of synthesized coordination compounds based upon proton transfer compounds by Hossein Aghabozorg’s research groups since 2000. The structural details of water clusters, (H₂O)_n, n = 2, 3, 4, 5, 6, 7, 8, 9, 15, 16 and ∞ are described systematically.     

Structures and Chemical Bonding in Antimony(III) Bromide Complexes with Pyridine

Weakly or “partially” bonded molecules are an important link between the chemical and van der Waals interactions. Molecular structures of six new SbBr₃-Py complexes in the solid state have been determined by single-crystal X-ray diffraction analysis. In all complexes all Sb atoms adopt a pseudo-octahedral coordination geometry which is completed by additional Sb⋅⋅⋅Br contacts shorter than the sum of the van der Waals radii, with Br−Sb⋅⋅⋅Br angles close to 180°. To reveal the nature of Sb–Br and Sb–N interactions, the DFT calculations were performed followed by the analysis of the electrostatic potentials, the orbital interactions and the topological analysis. Based on Natural Bond Orbital (NBO) analysis, the Sb–Br interactions range from the covalent bonds to the pnictogen bonds. A simple structural parameter, non-covalence criterion (NCC) is defined as a ratio of the atom-atom distance to the linear combination of sums of covalent and van der Waals radii. NCC correlates with E(2) values for Sb−N, Sb−Cl and Sb−Br bonds, and appears to be useful criterion for a preliminary evaluation of the bonding situation.     

σ‐Hole Bond Versus Hydrogen Bond: From Tetravalent to Pentavalent N,P, and As Atoms

Ab initio calculations were performed on complexes of ZH₄⁺ (Z=N, P, As) and their fluoro derivatives, ZFH₃⁺ and ZF₄⁺, with a HCN (or LiCN) molecule acting as the Lewis base through the nitrogen electronegative center. It was found that the complexes are linked by the Z? H???N hydrogen bond or another type of noncovalent interaction in which the tetravalent heavy atom of the cation acts as the Lewis acid center, that is, when the Z???N link exists, which may be classified as the σ‐hole bond. The formation of the latter interaction is usually preferable to the formation of the corresponding hydrogen bond. The Z???N interaction may be also considered as the preliminary stage of the S_N2 reaction. This is supported by the observation that for a short Z???N contact, the corresponding complex geometry coincides with the trigonal‐bipyramidal geometry typical for the transition state of the S_N2 reaction. The Z???N interaction for some of complexes analyzed here possesses characteristics typical for covalent bonds. Numerous interrelations between geometrical, topological and energetic parameters are discussed. The natural bond orbital method as well as the Quantum Theory of “Atoms in Molecules” is applied to characterize interactions in the analyzed complexes. The experimental evidences of the existence of these interactions, based on the Cambridge Structure Database search, are also presented. In addition, it is justified that mechanisms of the formation of the Z???N interactions are similar to the processes occurring for the other noncovalent links. The formation of Z???N interaction as well as of other interactions may be explained with the use of the σ‐hole concept.     

CH2ClO与NO反应机理的理论研究

采用B3LYP, MP2方法在6-31＋(d,p)和6-311＋＋G(d,p)水平研究了CH₂ClO自由基与NO反应的微观机理, 找到了三个可能的反应通道. 并得到了各反应通道的反应物、中间体、过渡态和产物的优化构型、谐振频率. 成功地解释了Wu等的实验结论. 从电子密度拓扑分析的角度, 讨论了化学反应过程中化学键的变化规律, 为实验研究大气化学反应提供理论依据. 找到了该反应的结构过渡态(结构过渡区)和能量过渡态, 发现了反应热与结构过渡区之间的关系.     

On vibrational bonding of IHI

The vibrational bond of IHI is described in analogy to the covalent bond of H₂⁺ by a Born—Oppenheimer-type separation of light (“hydrogenic” ≡ “electronic”) and heavy (“iodines” ≡ “protons”) particle degrees of freedom. Competing potential energy decreases and hydrogen zero-point energy increases (for the IHI antisymmetric stretching and bending modes) yield a minimum in the iodine symmetric stretching mode's potential energy which supports one bound vibrational IHI state.     

On the mechanism of the ion-molecule reaction CH3+ + CH4 = C2H5+ + H2

Experimental evidence supporting the “direct” reaction model and the “intermediate complex” model for the reaction CH₃⁺(CH₄, H₂)C₂H₅⁺ are analysed. It is shown that the evidence for the former can equally well be interpreted in terms of a proposed model of persistent complex formation and decay. The plausibility of a “direct” mechanism is discussed and is found to be poor.