TMAH-preparative thermochemolysis for the characterization of organic matter in densimetric fractions of a Mediterranean forest soil

Physical protection is one of the most important ways for stabilization of organic carbon in soils, and in order to properly manage soils as a sink for carbon, it is necessary to know how much organic carbon a given soil could protect and to have information on the molecular composition of this protected organic matter in soil. To this end, we studied individual horizons taken from a soil profile under Quercus rotundifolia stands over calcareous parent material. Horizons were subjected to a sequential extraction using solutions of sodium polytungstate (NaPT) of increasing density (1.6, 1.8 and 2.0) to differentiate five fractions: a free light, extractable without sonication, three occluded (extractable by sonication) and a dense (retained in the dense residue, after sonication). The obtained fractions were analyzed by preparative thermochemolysis followed by gas chromatography–mass spectrometry (GC/MS) in order to get some insight on the molecular composition. The total ion chromatograms obtained for the pyrolysates of both of the densimetric fractions show various series of fatty acids (as their methyl esters), n-alkanols (as their methyl ethers), methylated α,ω-diacids, methylated ω-hydroxyacids, various lignous subunits and permethylated deoxy aldonic acids derived from carbohydrates. The comparison of the distributions of the thermochemolysis products shows that organic carbon in the dense fractions of the deepest horizons were more influenced by a microbial reworking than the others dense fractions from the upper horizons. It is also the case for the occluded fraction 1 of the H horizon even the vegetal part of the organic carbon in that occluded fraction appears to have a non-woody origin. On the other hand, the dense fraction of the H horizon is strongly marked by vegetal origin.     

Unimolecular photochemistry of n-alkenes studied by photodissociation-photoionization mass spectrometry

The 193-nm unimolecular photochemistry of n-alkenes from C₅ to C₁₄ is studied by photodissociation-photoionization mass spectrometry (PDPI/MS). In PDPI/MS, a UV laser induces neutral unimolecular photodissociation. The resulting neutral fragments and any remaining parent molecules are then softly ionized with coherent vacuum UV radiation and mass analyzed. Photodissociation of n-alkenes is dominated by cleavage of the β C?C bond. Products of α- and γ-cleavage are typically less than 20% as abundant as the β-cleavage fragments. Secondary fragmentation of the primary products occurs both by neutral fragmentation during photodissociation and by ionic fragmentation during photoionization. The energetics of the neutral secondary reactions indicate that between 400 and 500 kJ/mol is consumed during photodissociation. The abundances of many secondary fragmentation products decrease with increasing molecular size. Because neutral fragmentation occurs without significant isomerization, PDPI/MS provides structural information that is not available from ionic fragmentation in conventional mass spectrometric experiments.     

Enantioselective separation of amino acids as biomarkers indicating life in extraterrestrial environments

Traces of prebiotic amino acids, i.e., the building blocks of proteins, are excellent biomarkers that could provide evidence of extinct or extant life in extra-terrestrial environments. In particular, characterization of the enantiomeric excess of amino acids gives relevant information about the biotic or abiotic origin of molecules, because it is generally assumed that life elsewhere could be based on either l or d amino acids, but not both. The analytical procedures used in in-situ space missions for chiral discrimination of amino acids must meet severe requirements imposed by flight conditions: short analysis time, low energy consumption, robustness, storage for long periods under extreme conditions, high efficiency and sensitivity, automation, and remote-control operation. Such methods are based on gas chromatography, high-pressure liquid chromatography, and capillary electrophoresis, usually coupled with mass spectrometry; of these, gas chromatography–mass spectrometry (GC–MS) is the only such combination yet used in space missions. Preliminary in-situ sample derivatization is required before GC–MS analysis to convert amino acids into volatile and thermally stable compounds. The silylation reagent most commonly used, N-(tert-butyldimethylsilyl)-N-methyltrifluoroacetamide, is unsuitable for detection of homochirality, and alternative derivatization techniques have been developed that preserve the stereochemical configuration of the original compounds and are compatible with spaceflight conditions. These include the reagent N,N-dimethylformamide dimethylacetal, which has already been used in the Rosetta mission, a mixture of alkyl chloroformate, ethanol, and pyridine, a mixture of perfluorinated anhydrides and perfluoro alcohols, and hexafluoroacetone, the first gaseous derivatizing agent. In all the space instruments, solvent extraction of organic matter and chemical derivatization have been combined in a single automatic and remote-controlled procedure in a chemical reactor. Liquid-based separation systems have been used in space missions. In particular, microchip capillary electrophoresis, based on microfluidic lab-on-a-chip systems, enables high-performance chemical analysis of amino acids with low mass and volume equipment and low power and reagent consumption. Coupling with laser-induced fluorescence detectors results in ultra-low limits of detection. This critical review describes applications of the on-board instruments used in the Rosetta mission to comets and in the more recent Mars exploration program, i.e., the Mars Science Laboratory and ExoMars missions.

Organic compounds in carbonaceous meteorites

The carbonaceous chondrite meteorites are fragments of asteroids that have remained relatively unprocessed since the formation of the solar system 4.6 billion years ago. These carbon-rich objects contain a variety of extraterrestrial organic molecules that constitute a record of chemical evolution prior to the origin of life. Compound classes include aliphatic hydrocarbons, aromatic hydrocarbons, amino acids, carboxylic acids, sulfonic acids, phosphonic acids, alcohols, aldehydes, ketones, sugars, amines, amides, nitrogen heterocycles, sulfur heterocycles and a relatively abundant high molecular weight macromolecular material. Structural and stable isotopic characteristics suggest that a number of environments may have contributed to the organic inventory, including interstellar space, the solar nebula and the asteroidal meteorite parent body. This review covers work published between 1950 and the present day and cites 193 references.     

GC–MS–MS analysis of bacterial fatty acids in heavily creosote-contaminated soil samples

Phospholipid fatty acid profiles of soil samples enable rapid and reproducible measurement and characterization of the dominant soil microbial communities. When extensive polycyclic aromatic hydrocarbon (PAH) pollution is present in the soil it is very difficult, or even impossible, to distinguish specific fatty acids in GC–MS chromatograms in full-scan mode, because of the PAHs which, because of their lipophilic character, are co-extracted with the lipids. Selected ions in the samples were scanned in MS–MS mode to eliminate the aromatic hydrocarbon signals and obtain clear chromatograms of the fatty acids. By using this technique it was possible to clearly distinguish at least eleven fatty acids in heavily creosote-contaminated soil samples (PAH concentration approximately 15 g kg⁻¹ dry weight of soil).     

In situ analysis of the Martian soil by gas chromatography: decoding of complex chromatograms of organic molecules of exobiological interest

Gas chromatography-mass spectrometry (GC-MS) will be used in future space exploration missions, in order to seek organic molecules at the surface of Mars, and especially potential chemical indicators of life. Carboxylic acids are among the most expected organic species at the surface of Mars, and they could be numerous in the analysed samples. For this reason, a chemometric method was applied to support the interpretation of chromatograms of carboxylic acid mixtures. The method is based on AutoCovariance Function (ACVF) in order to extract information on the sample--number and chemical structure of the components--and on separation performance. The procedure was applied to standard samples containing targeted compounds which are among the most expected to be present in the Martian soil: n-alkanoic and benzene dicarboxylic acids. ACVF was computed on the obtained chromatograms and plotted versus retention time: peaks of the ACVF plot can be related to specific molecular structures and are diagnostic for chemical identification of compounds.     

Forensic differentiation of biogenic organic compounds from petroleum hydrocarbons in biogenic and petrogenic compounds cross-contaminated soils and sediments

“Total petroleum hydrocarbons” (TPHs) or “petroleum hydrocarbons” (PHCs) are one of the most widespread soil pollutants in Canada, North America, and worldwide. Clean-up of PHC-contaminated soils and sediments costs the Canadian economy hundreds of million of dollars annually. Much of this activity is driven by the need to meet regulated levels of PHC in soil. These PHC values are legally required to be assessed using standard methods. The method most commonly used in Canada, specified by the Canadian Council of Ministers of the Environment (CCME), measures the total hydrocarbon concentrations in a soil by carbon range (Fraction 1: C₆–C₁₀; Fraction 2: C₁₀–C₁₆, Fraction 3: C₁₆–C₃₄: and Fraction 4: C₃₄+). Using the CCME method, all of the materials extractible by a mixture of 1:1 hexane:acetone are considered to be petroleum hydrocarbon contaminants. Many hydrocarbon compounds and other extractible materials in soil, however, may originate from non-petroleum sources. Biogenic organic compounds (BOCs) is a general term used to describe a mixture of organic compounds, including alkanes, sterols and sterones, fatty acids and fatty alcohols, and waxes and wax esters, biosynthesized by living organisms. BOCs are also produced during the early stages of diagenesis in recent aquatic sediments. BOC sources could include vascular plants, algae, bacteria and animals. Plants and algae produce BOCs as protective wax coating that are released back into the sediment at the end of their life cycle. BOCs are natural components of thriving plant communities. Many solvent-extraction methods for assessing soil hydrocarbons, however, such as the CCME method, do not differentiate PHCs from BOCs. The naturally occurring organics present in soils and wet sediments can be easily misidentified and quantified as regulated PHCs during analysis using such methods. In some cases, biogenic interferences can exceed regulatory levels, resulting in remediation of petroleum impacts that are not actually present. Consequently, reliance on these methods can trigger unnecessary and costly remediation, while also wasting valuable landfill space. Therefore, it is critically important to develop new protocols to characterize and differentiate PHCs and BOCs in contaminated sediments. In this study, a new reliable gas chromatography–mass spectrometry (GC–MS) method, in combination with a derivatization technique, for characterization of various biogenic compounds (including biogenic alkanes, sterols, fatty acids and fatty alcohols) and PHCs in the same sample has been developed. A multi-criteria approach has been developed to positively identify the presence of biogenic compounds in soil and sediment samples. More than thirty sediment samples were collected from city stormwater management (SWM) ponds and wetlands across Canada. In these wet sediment samples, abundant biogenic n-alkanes, thirteen biogenic sterols, nineteen fatty carboxylic acids, and fourteen fatty alcohols in a wide carbon range have been positively identified. Both PHCs and BOCs in these samples were quantitatively determined. The quantitation data will be used for assessment of the contamination sites and toxicity risks associated with the CCME Fraction 3 hydrocarbons.     

Structural alterations of humic acid fractions in a steel slag-compost fertilizer during fertilization. Analysis by pyrolysis/methylation-gas chromatography/mass spectrometry

Alterations in the structural features of humic acids (HAs) in a steel slag-compost fertilizer for supplying soluble Fe(II) to barren ground in coastal areas were monitored during a 6-month period of fertilization. HAs, the major organic fractions in the fertilizer, were extracted at different periods of time (2, 4 and 6 months) in the absence and presence of steel slag. To focus on the polymeric structure of the HA-backbone and the organic fractions, which are sorbed onto the HA-polymeric matrix (e.g., lipids), the extracted HA samples were analyzed by pyrolysis-gas chromatography/mass spectrometry under conditions where the sample is methylated with tetramethylammonium hydroxide (TMAH-py-GC/MS). The structural features analyzable by TMAH-py-GC/MS for the HA were dramatically altered in the presence of steel slag during the fertilization period. The major modification involved a decrease in phenolic moieties and a significant increase in the sulfur-containing pyrolysate compounds. These results indicate that the steel slag has a significant effect in altering the structure of HA in the fertilizer. TMAH-py-GC/MS analysis of the HAs indicated that the sulfur in the HAs was present in an organic form and not as elemental sulfur. Significant increases in the levels of biomarker fatty acids (iso- and anteiso-C_15:0 and C_17:0 carboxylic acids), which are related to the activity of sulfate reducing bacteria, suggests that the significant alterations in the HA structures in the presence of steel slag can be attributed to the sulfurization of organic matter in the fertilizer to form hydrogen polysulfides by the reduction of sulfate ions in seawater and/or steel slag via microbial processes.     

Quantification of organic acids in particulate matter by coupling of thermally assisted hydrolysis and methylation with thermodesorption-gas chromatography–mass spectrometry

A quantitative method for the determination of organic acids in atmospheric particles is developed. The method couples a derivatisation step (thermally assisted hydrolysis and methylation) and a Curie point pyrolyser as a thermal desorption technique and gas chromatography–mass spectrometry (CPP-GC–MS). Among the reagents tested (tetramethylammonium hydroxide (TMAH), tetramethylammonium acetate (TMAAc) and phenyltrimethylammonium hydroxide (TMPAH)), the best performance was found using TMAAc as a derivatisation reagent for the reaction time of 4 s at 510 °C as heating temperature. Calibration was performed for a series of fatty acids (FA), dicarboxylic acids (DCA) and terpenoic acids (TA) under these conditions. Coefficients of determination (R²) were between 0.94 and 0.98. Limits of detection (LOD) were in the nanogram-range between 0.1 and 3.6 ng. The method is applied on atmospheric particle samples to obtain the quantification reproducibility and quantification limits. Reproducibility was determined in terms of relative standard deviations (RSD) for ambient aerosol samples collected by a high-volume-sampler (HVS, RSD = 6–45%, n = 10) and a Berner impactor (BI, RSD = 5–34%, n = 10). Based on 24 h sampling time the developed method enables quantification of all three classes of acids for both sampling techniques. Calibration data and presented volume concentrations are compared with literature data. A comparison with an off-line methylation-GC–MS using BF₃ as a derivatisation reagent and capillary electrophoresis coupled mass spectrometry (CE-MS) showed a good agreement. Minimal sample preparation is the main advantage of the developed method. Depending on the sensitivity requirements the present method can be a fast and simple alternative to GC–MS techniques with conventional sample preparation steps for semi-volatile organic acids.     

Py-GC/MS, GC/MS and FTIR investigations on LATE Roman-Egyptian adhesives from opus sectile: New insights into ancient recipes and technologies

An analytical protocol based on optical microscopy, Fourier transforms infrared spectroscopy (FTIR), analytical pyrolysis in the presence of hexamethyldisilazane followed by gas chromatographic/mass spectrometric analysis (Py-GC/MS) and gas chromatography/mass spectrometry after alkaline hydrolysis, solvent extraction and trimethylsilylation (GC/MS) was used in the chemical characterisation of the original adhesives used to fix monochrome and mosaic glass and stone plaques coming from the Late Roman archaeological site of Antinoopolis (Egypt).FTIR analysis demonstrated the presence of calcite fragments, and Py-GC/MS and GC/MS analyses provided detailed molecular compositions, highlighting the presence of a wide range of compound classes including diterpenoid acids, tricyclic abietanes with a high degree of aromatisation, mid- and long-chain monocarboxylic fatty acids, mono- and di-hydroxy acids, α,ω-dicaboxylic fatty acids, n-alkanols, and n-alkanes. Characteristic biomarkers and their distribution patterns indicated the presence of pine pitch in all the adhesives, which in some cases was admixed with beeswax and brassicaceae seed oil.The results provided new insights into the complex recipes used by artisans in ancient Egypt in the production of adhesives and in the sophisticated manufacture of opus sectile decorations.     

Analysis of thiols by microchip capillary electrophoresis for in situ planetary investigations

The detection of thiols on extraterrestrial bodies could provide evidence for life, as well as a host of potential prebiological or abiological processes. Here, we report a novel protocol to analyze organic thiols by microchip CE with LIF detection. Thiols were labeled with Pacific Blue C5 maleimide and analyzed by MEKC. The separation buffer consisted of 15 mM tetraborate pH 9.2 and 25 mM SDS. The optimized method provided LODs ranging from 1.4 to 15 nM. The method was validated using samples collected from geothermal pools at Hot Creek Gorge, California, which were found to contain 2‐propanethiol and 1‐butanethiol in the nanomolar concentration range. These samples serve as chemical analogues to material potentially present in the reducing environment of primitive Earth and also at sulfurous regions of Mars. Hence, the protocol developed here enables highly sensitive thiol analysis in samples with complexity comparable to that expected in astrobiologically relevant extraterrestrial settings. This new protocol could be readily added to the existing suite of microfluidic chemical analyses developed for in situ planetary exploration; all that is required is the incorporation of two new reagents to the payload of an existing instrument concept.     

Evaluation of settled floor dust for the presence of microbial metabolites and volatile anthropogenic chemicals in indoor environments by LC-MS/MS and GC-MS methods

This study reports on detection of a large number of biological and anthropogenic pollutants using LC-MS/MS and GC-MS technologies in settled floor dust (SFD). The latter technique was applied to obtain a general picture on the presence of microbial as well as non-microbial volatile organic compounds, whereas the targeted LC-MS/MS analysis focused on identification of species specific secondary metabolites. In the absence of moisture monitoring data the relevance of finding of stachybotrylactam and other metabolites of tertiary colonizers are confined only to accidental direct exposure to SFD. To the best of our knowledge 30 of the 71 identified volatile organic compounds (VOCs) are newly reported in SFD matrix. Coordinated application of “AMDIS and Spectconnect” was found beneficial for the evaluation and identification of prime volatile pollutants in complex environmental samples. Principal component analysis (PCA) of peak areas of 18 microbial volatile organic compounds (MVOCs) resulted in identification of nonanal as potential MVOC marker. Two more volatiles toluene and 1-tetradecanol though had discriminative influence, are not regarded as MVOC markers, considering their probable alternate origin from paints and cosmetics, respectively.     

Fatty acids and amino acids of entomopathogenic fungus <Emphasis Type="Italic">Conidiobolus coronatus</Emphasis> grow on minimal and rich media

Entomopathogenic fungi are referred to as potential candidates as insect pest control agents. The objective of the study was to identify fatty acids and amino acids from Conidiobolus coronatus cultured on two different media. Each medium was extracted with ethyl acetate and its mixtures with isopropanol, acetonitrile and methanol. Analyses of fatty acids and amino acids of entomopathogenic fungus C. coronatus were performed by means of gas chromatography coupled with mass spectrometry. The analysis showed that the fungus C. coronatus produces the following groups of compounds: fatty acids and amino acids; α- and β-glucopyranose were also identified. The identified fatty acids included 12–20, 22 and 24 carbon atoms per chain. The highest content of fatty acids was detected in a mycelium sample cultured in a liquid minimal medium extracted with ethyl acetate. The lowest content of these organic compounds was identified in mycelium cultured in a liquid nutrient-rich medium extracted with ethyl acetate–methanol mixture. Fatty acids were found to account for 62.0 mass % to 94.4 mass % of all organic compounds in the analyzed mycelia. C18:1 acids were detected in the highest amounts when ethyl acetate was used as the extracting agent. The identified amino acids accounted for 4 mass % to 21 mass % of all organic compounds. Upon extraction of C. coronatus mycelium samples with the ethyl acetate—methanol mixture, two anomeric forms of glucose were also identified. An analysis of the studied material confirmed, that the entomopathogenic fungus C. coronatus is a very rich source of organic compounds, which might encourage its further research so as to identify an even larger number of compounds being produced by this species.     

Separation of dietary omega‐3 and omega‐6 fatty acids in food by capillary electrophoresis

A lower dietary omega‐6/omega‐3 (n‐6/n‐3) fatty acid ratio (<4) has been shown to be beneficial in preventing a number of chronic illnesses. Interest exists in developing more rapid and sensitive analytical methods for profiling fatty acid levels in foods. An aqueous CE method was developed for the simultaneous determination of 15 n‐3 and n‐6 relevant fatty acids. The effect of pH and concentration of buffer, type and concentration of organic modifier, and additive on the separation was investigated in order to determine the best conditions for the analysis. Baseline separations of the 15 fatty acids were achieved using 40 mM borate buffer at pH 9.50 containing 50 mM SDS, 10 mM β‐cyclodextrin, and 10% acetonitrile. The developed CE method has LODs of <5 mg/L and good linearity (R² > 0.980) for all fatty acids studied. The proposed method was successfully applied to the determination of n‐3 and n‐6 fatty acids in flax seed, Udo® oils and a selection of grass‐fed and grain‐fed beef muscle samples.     

Rapid Analysis of Fatty Acid Composition in Polysorbate 80 by Gas Chromatography with On-line Pyrolytic Methylation Technique

A novel method of on-line pyrolytic methylation–gas chromatography was developed for the rapid analysis of fatty acid composition in Polysorbate 80 without any tedious pre-treatment steps. Fatty acids in Polysorbate 80 were converted into their corresponding fatty acid methyl esters in the presence of trimethylsulfonium hydroxide with a vertical microfurnace pyrolyzer at 300 °C. The premixing procedure of sample and organic alkali reagent was necessary before the on-line pyrolytic methylation to improve the repeatability. The relative standard deviations for peak areas of fatty acids in Polysorbate 80 were over the range of 0.3–9.1% (n = 5). Six Polysorbate 80 samples, consisting of three samples of pharmaceutical grade and three samples of non-pharmaceutical grade, were analyzed to evaluate the feasibility of the proposed method. The relative percentages (%) of fatty acids for samples of pharmaceutical grade meet the Chinese Pharmacopoeia requirements with the amount of oleic acid varying from 78.4 to 89.3%. On the other hand, the relative percentages (%) for palmitic acid and stearic acid in samples of non-pharmaceutical grade were out of the specification limits, with the amount of oleic acid varying from 62.0 to 63.5%. The quantitative results determined by on-line pyrolytic methylation were in agreement with those obtained by off-line methylation. The result proved that gas chromatography with on-line pyrolytic methylation technique is of great value for rapid screening analysis of Polysorbate 80 samples in bulks.     

Quantitative Analysis of Long Chain Fatty Acids Present in a Type I Kerogen Using Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Compared with BF3/MeOH Methylation/GC-FID

Long chain fatty acids (LCFAs) are present in various natural samples and are easily detectable using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FT-ICR-MS) in negative ion mode. The capability of the ESI-FT-ICR-MS for quantifying LCFAs was evaluated by performing a standard addition followed by an internal standard methodology to several kerogen extracts using n-C₂₀ fatty acid as standard. As the concentration of the standard increased, the magnitude of its peak (m/z 311.29525) increased linearly but with two separate slopes, leaving the entire mass spectra relatively unchanged, which shows evidence of reproducibility. Response factors of other LCFAs are obtained using a standard addition approach. We employed five LCFA standards (n-C₁₅, n-C₁₉, n-C₂₄, n-C₂₆, and n-C₃₀) with different carbon numbers. This allowed us to determine the response factor of all fatty acids (with carbon number between 15 and 30) by plotting the slope of each standard versus its carbon number. With the observed response factors and use of the internal standard, the concentrations of LCFAs in four kerogen extracts were measured by ESI-FT-ICR-MS and compared with those from GC-FID. The carbon number distribution obtained by ESI-FT-ICR-MS matched well the GC-FID distribution (5%–50%) with the exception of C₁₆ and C₁₈, considering that ESI-FT-ICR-MS does not differentiate between normal and branched LCFAs, whereas GC-FID does. This allows one to quantitatively compare samples with a relatively similar matrix for specific compounds such as LCFAs with no need of time-consuming derivatization procedures. Moreover, the calibration can be extended to higher carbon numbers with ESI-FT-ICR-MS, beyond the capabilities of GC/MS.

Electrochemical polymerization of dicarboxylic acids—II. Oligomers and side products in the polymerization of adipic acid

The electrochemical polymerization of adipic acid in methanol and in methanol-pyridine (1:1) via the Kolbe reaction

was investigated as regards the oligomeric and side products. GC-MS, i.r. and NMR were used to identify the many products. Gaseous and volatile compounds were identified as C₄ and C₈ hydrocarbons besides λ- and δ-valerolactones. The less volatile compounds were separated on silica gel columns to fractions, viz. that eluted by heptane which contained hydrocarbons, that eluted by benzene which contained ether and ester groups and that eluted by methanol which contained higher oligomeric products containing oxygen. Four types of hydrocarbons were formed, viz.n-alkanes, n-alkenes, x-alkenes (the place of the double bond is not known) and cycloalkanes. Saturated and unsaturated oligomeric mono- and di-carboxylic acids were also formed.     

The adsorption properties of titanium dioxide

The adsorption properties of titanium dioxide were studied by gas chromatography. We used organic compounds from different classes, namely, n-alkanes, n-alkenes (C₆-C₈), and polar compounds (electron donors and acceptors) as test adsorbates. The differential heats of adsorption and the contributions of dispersion and specific intermolecular interaction energies were determined for the systems from the experimental retention data. The electron-donor and electron-acceptor characteristics of the ultimately hydroxylated surface of TiO₂ were evaluated.