Will water act as a photocatalyst for cluster phase chemical reactions? Vibrational overtone-induced dehydration reaction of methanediol

The possibility of water catalysis in the vibrational overtone-induced dehydration reaction of methanediol is investigated using ab initio dynamical simulations of small methanediol-water clusters. Quantum chemistry calculations employing clusters with one or two water molecules reveal that the barrier to dehydration is lowered by over 20 kcal/mol because of hydrogen-bonding at the transition state. Nevertheless, the simulations of the reaction dynamics following OH-stretch excitation show little catalytic effect of water and, in some cases, even show an anticatalytic effect. The quantum yield for the dehydration reaction exhibits a delayed threshold effect where reaction does not occur until the photon energy is far above the barrier energy. Unlike thermally induced reactions, it is argued that competition between reaction and the irreversible dissipation of photon energy may be expected to raise the dynamical threshold for the reaction above the transition state energy. It is concluded that quantum chemistry calculations showing barrier lowering are not sufficient to infer water catalysis in photochemical reactions, which instead require dynamical modeling.     

Structure-activity studies on the fluorescent indicator in a displacement assay for the screening of small molecules binding to RNA

A series of xanthone and thioxanthone derivatives with aminoalkoxy substituents were synthesized as fluorescent indicators for a displacement assay in the study of small-molecule-RNA interactions. The RNA-binding properties of these molecules were investigated in terms of the improved binding selectivity to the loop region in the RNA secondary structure relative to 2,7-bis(2-aminoethoxy)xanthone (X2S) by fluorimetric titration and displacement assay. An 11-mer double-stranded RNA and a hairpin RNA mimicking the stem loop IIB of Rev response element (RRE) RNA of HIV-1 mRNA were used. The X2S derivatives with longer aminoalkyl substituents showed a higher affinity to the double-stranded RNA than the parent molecule. Introduction of a methyl group on the aminoethoxy moiety of X2S effectively modulated the selectivity to the RNA secondary structure. Methyl group substitution at the C1' position suppressed the binding to the loop regions. Substitution with two methyl groups on the amino nitrogen atom resulted in reducing the affinity to the double-stranded region by a factor of 40%. The effect of methyl substitution on the amino nitrogen atom was also observed for a thioxanthone derivative. Titration experiments, however, suggested that thioxanthone derivatives showed a more prominent tendency of multiple binding to RNA than xanthone derivatives. The selectivity index calculated from the affinity to the double-stranded and loop regions suggested that the N,N-dimethyl derivative of X2S would be suitable for the screening of small molecules binding to RRE.     

Structure–Activity Studies on the Fluorescent Indicator in a Displacement Assay for the Screening of Small Molecules Binding to RNA

A series of xanthone and thioxanthone derivatives with aminoalkoxy substituents were synthesized as fluorescent indicators for a displacement assay in the study of small‐molecule–RNA interactions. The RNA‐binding properties of these molecules were investigated in terms of the improved binding selectivity to the loop region in the RNA secondary structure relative to 2,7‐bis(2‐aminoethoxy)xanthone (X2S) by fluorimetric titration and displacement assay. An 11‐mer double‐stranded RNA and a hairpin RNA mimicking the stem loop IIB of Rev response element (RRE) RNA of HIV‐1 mRNA were used. The X2S derivatives with longer aminoalkyl substituents showed a higher affinity to the double‐stranded RNA than the parent molecule. Introduction of a methyl group on the aminoethoxy moiety of X2S effectively modulated the selectivity to the RNA secondary structure. Methyl group substitution at the C1′ position suppressed the binding to the loop regions. Substitution with two methyl groups on the amino nitrogen atom resulted in reducing the affinity to the double‐stranded region by a factor of 40 %. The effect of methyl substitution on the amino nitrogen atom was also observed for a thioxanthone derivative. Titration experiments, however, suggested that thioxanthone derivatives showed a more prominent tendency of multiple binding to RNA than xanthone derivatives. The selectivity index calculated from the affinity to the double‐stranded and loop regions suggested that the N,N‐dimethyl derivative of X2S would be suitable for the screening of small molecules binding to RRE.     

Catalytic hydrogen transfer over magnesia, Part XVIII. , Chemoselective reduction of formyl and acetyl derivatives of furan and thiophene

Chemoselective reduction of formyl and acetyl derivatives of furan (F) and thiophene (T) to the corresponding carbinols by 2-propanol has been performed in vapour phase over MgO as a catalyst. Formyl derivatives of (F) and (T) have been reduced to the corresponding carbinols with selectivity 96 and 71%, respectively. Above 573 K the reduction of (T)-CHO was accompanied by the formation of thiophene whose yield increased with temperature (36% at 723 K). Acetyl derivatives of (F) and (T) have been reduced to the corresponding carbinols which at higher temperatures underwent dehydration to vinyl derivatives and were further reduced to ethyl derivatives. This revised version was published online in June 2006 with corrections to the Cover Date.     

Density functional theory investigation of the reactions of isodihalomethanes (CH(2)X-X where X = Cl, Br, or I) with ethylene: substituent effects on the carbenoid behavior of the CH(2)X-X species

We investigated the chemical reactions of isodihalomethane (CH(2)X-X) and CH(2)X radical species (where X = Cl, Br, or I) with ethylene and the isomerization reactions of CH(2)X-X using density functional theory calculations. The CH(2)X-X species readily reacts with ethylene to give the cyclopropane product and an X(2) product via a one-step reaction with barrier heights of approximately 2.9 kcal/mol for CH(2)I-I, 6.8 kcal/mol for CH(2)Br-Br, and 8.9 kcal/mol for CH(2)Cl-Cl. The CH(2)X reactions with ethylene proceed via a two-step reaction mechanism to give a cyclopropane product and X atom product with much larger barriers to reaction. This suggests that photocyclopropanation reactions using ultraviolet excitation of dihalomethanes most likely occurs via the isodihalomethane species and not the CH(2)X species. The isomerization reactions of CH(2)X-X had barrier heights of approximately 14.4 kcal/mol for CH(2)I-I, 11.8 kcal/mol for CH(2)Br-Br, and 9.1 kcal/mol for CH(2)Cl-Cl. We compare our results for the CH(2)X-X carbenoids to results from previous calculations of the Simmons-Smith-type carbenoids (XCH(2)ZnX) and Li-type carbenoids (LiCH(2)X) and discuss their differences and similarities as methylene transfer agents.     

Synthesis of cavity extended cyclotriveratrylenes

Aromatic nucleophilic substitution reaction of cyclotriguaiacylene 1 with fluorobenzene derivatives bearing electron-withdrawing groups X (CHO, COCH(3), CN, NO(2)) in the para position gives a series of cyclotriveratrylene derivatives (3a-d), where the X substituents can be transformed to hydrogen-bond donor groups to afford new CTV-based heteroditopic receptors. The substituents of compounds 3a-d favor the facile demethylation reaction of the CTV derivatives. Attempts to perform alkylation reactions on derivatives (8c,d) evidenced the formation of a stereoisomeric mixture of symmetrical and unsymmetrical compounds.     

Recyclization of 2-vinylpyridinium quaternary salts

It is shown that in the reaction of 2-vinylpyridinium quaternary salts with methylammonium sulfite under isomerization recyclization conditions a water molecule adds initially to the double bond of the vinyl substituents, after which the resulting carbinols undergo recyclization to N-alkylaniline derivatives. The reaction is accompanied by a parallel process involving dealkylation of the pyridine ring.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 2, pp. 229–232, February, 1982.     

Substituent effect on the acid-promoted hydrolysis of 2-aryloxazolin-5-one: normal vs reverse

Computational investigations on the acid-promoted hydrolysis of 2-aryl-4,4-dimethyloxazolin-5-one (AMO) and its seven para- and meta-substituted derivatives (with electron-donating groups R = OH, OCH(3), CH(3) and electron-withdrawing groups R = Cl, m-Cl, CF(3), NO(2)) were presented by the density functional theory (B3LYP) method. Two types of reaction mechanism, N-path and O-path, are taken into account, in which the attacks by water molecules at the C2 and C5 are accelerated after the protonation on N3 and carbonyl oxygen atoms, respectively. Our computational results clearly manifest that the hydrolysis of AMOs has an obvious substituent effect at the para and meta positions of the benzene ring by correlating the barrier heights with the Hammett constants of substituents. Furthermore, the N-path shows a normal substituent effect, while the favorable O-path shows a reverse substituent effect. The observed reverse substituent effect in experiment actually springs from the reverse substituent effect of the O-path, not the N-path. The substituent effect of the N-path and O-path can be explained by the electrostatic potential at nuclei (EPN) values and Fukui function, respectively. Our theoretical data provided will allow for a better understanding of the acid-promoted hydrolysis mechanism and the observed reverse substituent effect of the AMOs, in nice agreement with the available experimental conclusion.     

Effect of substituent structure on pyrimidine electrophilic substitution

In an investigation into the electrophilic nitrosation reactions of a series of 4,6-disubstituted pyrimidine derivatives, a subtle interplay between the electronic nature of the C-4 and C-6 substituents and reactivity was found where these were chloro-, mono- or disubstituted amino groups. Effects such as the presence of an aryl group or two alkyl groups on the amino moiety impede the progress of the reaction despite the presence of a second activating group.     

Selective Manganese‐Catalyzed Oxidation of Hydrosilanes to Silanols under Neutral Reaction Conditions

The first manganese‐catalyzed oxidation of organosilanes to silanols with H₂O₂ under neutral reaction conditions has been accomplished. A variety of organosilanes with alkyl, aryl, alknyl, and heterocyclic substituents were tolerated, as well as sterically hindered organosilanes. The oxidation appears to proceed by a concerted process involving a manganese hydroperoxide species. Featuring mild reaction conditions, fast oxidation, and no waste byproducts, the protocol allows a low‐cost, eco‐benign synthesis of both silanols and silanediols.     

α‐Sila‐Dipeptides: Synthesis and Characterization

The first two α‐sila‐dipeptides, 7 and cyclo‐sila‐dipeptide 8 , were synthesized and characterized by several methods, including X‐ray crystallography. Bulky t‐BuMe₂Si substituents provide some kinetic stabilization to the synthesized molecules. 7 and 8 are the first examples of a “Si for C switch” in the central α‐position of an amino acid or a peptide, in which silicon is bonded to both the amino and the carbonyl groups.     

Trans influence on the rate of reductive elimination. Reductive elimination of amines from isomeric arylpalladium amides with unsymmetrical coordination spheres

To determine the trans effect on the rates of reductive eliminations from arylpalladium(II) amido complexes, the reactions of arylpalladium amido complexes bearing symmetrical and unsymmetrical DPPF (DPPF = bis(diphenylphosphino)ferrocene) derivatives were studied. THF solutions of LPd(Ar)(NMeAr') (L = DPPF, DPPF-OMe, DPPF-CF3, DPPF-OMe,Ph, DPPF-Ph,CF3, and DPPF-OMe,CF3; Ar = C6H4-4-CF3; Ar' = C6H4-4-CH3, Ph, and C6H4-4-OMe) underwent C-N bond forming reductive elimination at -15 C to form the corresponding N-methyldiarylamine in high yield. Complexes ligated by symmetrical DPPF derivatives with electron-withdrawing substituents on the DPPF aryl groups underwent reductive elimination faster than complexes ligated by symmetrical DPPF derivatives with electron-donating substituents on the ligand aryl groups. Studies of arylpalladium amido complexes containing unsymmetrical DPPF ligands revealed several trends. First, the complex with the weaker donor trans to nitrogen and the stronger donor trans to the palladium-bound aryl group underwent reductive elimination faster than the regioisomeric complex with the stronger donor trans to nitrogen and the weaker donor trans to the palladium-bound aryl group. Second, the effect of varying the substituents on the phosphorus donor trans to the nitrogen was larger than the effect of varying the substituents on the phosphorus donor trans to the palladium-bound aryl group. Third, the difference in rate between the isomeric arylpalladium amido complexes was similar in magnitude to the differences in rates resulting from conventional variation of substituents on the symmetric phosphine ligands. This result suggests that the geometry of the complex is equal in importance to the donating ability of the dative ligands. The ratio of the differences in rates of reaction of the isomeric complexes was similar to the relative populations of the two geometric isomers. This result and consideration of transition state geometries suggest that the reaction rates are controlled more by substituent effects on ground state stability than on transition state energies. In addition, variation of the aryl group at the amido nitrogen showed systematically that complexes with more electron-donating groups at nitrogen undergo faster reductive elimination than those with less electron-donating groups at nitrogen.     

Cycloaromatization of 1,4-pentadiynes: a viable possibility?

[structure: see text] The effects of several mostly sigma-withdrawing, pi-donating substituents X on the hitherto unknown Bergman-like cyclizations of 3-substituted 1,4-pentadiynes were studied at the BLYP/6-311+G//BLYP/6-31G level of theory. As the cyclization with X = OH(+) has the lowest barrier and is about thermoneutral, we predict that the title reaction is viable, for instance, through activation of derivatives with X = O with Lewis acids.     

Enthalpies of formation of monoderivatives of hydrocarbons: Interaction of polar groups with an alkyl group

Energies of hydrocarbon monoderivatives CH(3)X, C(2)H(5)X, n-C(4)H(9)X, and n-C(5)H(11)X with 16 different substituents X were calculated at the levels B3LYP/6-311+G(d,p) and B3LYP/AUG-cc-pVTZ//B3LYP/6-311+G(d,p). The results were used to test the validity of the additive rule that has served commonly for estimating the enthalpies of formation Delta(f)H(T). The exact additivity corresponds to zero reaction energy DeltaE of the isodesmic reaction, in which the substituent X is transferred from one alkyl group R to another. Additivity is approximately fulfilled for butyl and pentyl derivatives with the differences less than 0.3 kJ mol(-1) (except charged groups X). Methyl derivatives deviated from the additive rule up to 22 kJ mol(-1) for dipolar groups X and 45 kJ mol(-1) for charged group, in agreement with the available experiments and with the anticipation of all suggested empirical schemes. In addition, smaller deviations of ethyl derivatives (3 or 20 kJ mol(-1), respectively) were observed here for the first time. There is no correlation between the deviations of methyl and ethyl derivatives; they are also not related to steric effects, and only partly to polarization. Deviations of methyl derivatives are proportional to the electronegativity of the first atom of the substituent; even when the definition of electronegativity is somewhat questionable, one can say in any case that it is controlled by the first atom.     

Quantum-chemical Simulation of Migration of Proton and Methoxycarbonyl Group in Amidinylcyclopentadiene Derivatives

A quantum-chemical simulation by MNDO method of probable migration mechanisms of proton and methoxycarbonyl group in a series of amidinylcyclopentadiene derivatives taking in consideration methoxycarbonyl and aryl substituents attached respectively to the cyclopentadienyl and amidine moieties provided a theoretical confirmation of 1,4-shift occurrence for the methoxycarbonyl group in quantitative agreement with the experimental evaluation of the barrier in this reaction.     

Donor-acceptor interaction and intramolecular proton transfer in aminopolyenes

The influence of donor and acceptor substituents at chain termini on the geometry of the chain and charge distribution on atoms was studied for the ground and lower triplet electronically excited state of model ω-dimethylaminopolyene molecules (CH₃)₂N(CH=CH) _n CH=C(CN)₂, n = 1–3. Calculations were performed by the B3LYP/6-31+G** method. The influence of substituents on bond lengths and the amplitude of deviations from the equilibrium carbon-carbon bond length in unsubstituted polyenes increased as the conjugation chain grew longer. The deviations of the effects of both donor and acceptor groups from additivity, however, decreased. In the lower triplet electronically excited state of the molecule, the effect of substituents on changes in C-C bond lengths along the chain was not damped. The section of the potential energy surface for intramolecular proton shift from the donor amino to the acceptor nitrile group in “cyclic” (cis) conformers of the H₂N-CH=CH-CN and H₂N-CH=CH-CH=CH-CN molecules was analyzed. The structure of the reaction transition state and the height of the barrier to proton transfer were calculated.     

Ketene-ketenimine rearrangements in the gas phase and in polar media. 1,3-Migration intermediates and sequential transition states

[reaction: see text] Calculations of the activation barrier for the 1,3-shifts of substituents X in alpha-imidoylketenes 1 (HN=C(X)-CH=C=O), which interconverts them with alpha-oxoketenimines 3 (HN=C=CH-C(X)=O) via a four-membered cyclic transition state TS2 have been performed at the B3LYP/6-311+G(3df,2p)//B3LYP/6-31G* level. Substituents with accessible lone pairs have the lowest activation barriers for the 1,3-shift (halogens, OR, NR2). The corresponding activation barriers for the alpha-oxoketene-alpha-oxoketene rearrangement of 4 via TS5 are generally lower by 1-30 kJ/mol. A polar medium (acetonitrile, epsilon = 36.64) was simulated using the polarizable continuum (PCM) solvation model. The effect of the solvent field is a reduction of the activation barrier by an average of 12 kJ/mol. In the cases of 1,3-shifts of amino and dimethylamino groups, the stabilization of the transition state TS2 in a solvent field is so large that it becomes an intermediate, Int2, flanked by transition states (TS2' and TS2') that are due primarily to internal rotation of the amine functions, and secondarily to the 1,3-bonding interaction. In the case of the alpha-oxoketene-alpha-oxoketene rearrangement of 4, there is a corresponding intermediate Int5 for the 1,3-amine shift already in the gas phase.     

Conformational energies, rotational barrier heights and molecular structures in C(CH2X)4 molecules (X=F, Cl, Br)

The conformational energies, rotational barrier heights and molecular structures in C(CH₂X)₄ molecules (X=F, Cl, Br) based on molecular-mechanics calculations have been obtained. The results from these calculations are compared with the experimental gas-phase results.     

Stereoelectronic Properties of Tetrahedral Species derived from Carbonyl Groups. Ab initio study of the hydroxymethanes

Analysis of the electronic structure of the hydroxymethanes provides a consistent picture of stereoelectronic effects in such molecules: The average C? O bond length decreases in the series methanol, methanediol, methanetriol. An oxygen (O′) lone pair, which is trans-anti-periplanar (app) to another oxygen (O″), shortens and strengthens the C? O′ bond and simultaneously lengthens and weakens the C? O′ bond. This is consistent with solid state structural evidence and with the reactivity patterns of tetrahedral species resulting from nucleophilic addition to a carbonyl group.     

Facile synthesis and characterization of phosphorescent Pt(N(∧)C(∧)N)X complexes

In order to investigate the ground state and excited state properties of Pt(N(∧)C(∧)N)X, we have prepared a series of Pt complexes, where N(∧)C(∧)N aromatic chelates are derivatives of m-di(2-pyridinyl)benzene (dpb) and X are monoanionic and monodentate ancillary ligands including halide and phenoxide. Facile synthesis of platinum m-di(2-pyridinyl)benzene chloride and its derivatives, using controlled microwave heating, was reported. This method not only shortened the reaction time but also improved the reaction yield for most of the Pt complexes. Two Pt(N(∧)C(∧)N)X complexes have been structurally characterized by X-ray crystallography. The change of functional group does not affect the structure of the core Pt(N(∧)C(∧)N)Cl fragment. Both molecules pack as head-to-tail dimers, each molecule of the dimer related to the other by a center of inversion. The electrochemical studies of all Pt complexes demonstrate that the oxidation process occurs on the metal-phenyl fragment and the reduction process is associated with the electron accepting groups like pyridinyl groups and their derivatives. The maximum emission wavelength of the Pt(N(∧)C(∧)N)X complexes ranges between 471 and 610 nm, crossing the spectrum of visible light. Most of the Pt complexes are strongly luminescent (Φ = 0.32-0.63) and have short luminescence lifetimes (τ = 4-7 μs) at room temperature. The lowest excited state of the Pt(N(∧)C(∧)N)X complexes is identified as a dominant ligand-centered (3)π-π* state with some (1)MLCT/(3)MLCT character, which appears to have a larger (1)MLCT component than their bidentate and tridentate analogs. This results in a high radiative decay rate and high quantum yield for Pt(dpb)Cl and its analogs. However, the excited state properties of the Pt(N(∧)C(∧)N)X complexes are strongly dependent on the nature of the electron-accepting groups and substituents to the metal-phenyl fragment. A rational design will be needed to tune the emission energies of the Pt(N(∧)C(∧)N)X complexes over a wide range while maintaining their high luminescent efficiency.