Cyclic triureas--synthesis, crystal structures and properties

The synthesis of 24-membered macrocycles is described, in which rigid xanthene units (X) and/or diphenyl ether units (D) as flexible analogues are linked via urea groups. All four possible combinations (XXX, XXD, XDD, DDD) have been obtained with yields of 40-72% for the cyclisation step. In two cases, the respective cyclic hexamers (XXDXXD, XXXXXX) were also isolated. Two compounds have been characterised by a single crystal X-ray analysis of the free triurea (XXD, XDD) and one example (DDD) by its complex with tetrabutylammonium chloride. It shows the chloride anion in the centre of the macrocycle, held by six NH...Cl- hydrogen bonds. The interaction with various other anions has been studied by 1H NMR. Complexation constants for chloride, bromide and acetate have been measured for all trimers by UV spectrophotometry. Molecular dynamics simulations have been carried out to determine the conformation of the free receptors in chloroform and acetonitrile. They show that in chloroform, intramolecular hydrogen bonding occasionally facilitated by trans-->cis isomerisation of an amide bond dominates the conformation of the macrocycles while in acetonitrile (the solvent used for complexation measurements), the ligating urea NH protons are properly arranged for the complexation of anions, however, their strong solvation is counteractive to the complexation.     

Preparation and unique circular dichroism phenomena of urea-functionalized self-folding resorcinarenes bearing chiral termini through asymmetric hydrogen-bonding belts

Chiral macrocycles with eight (R)- and (S)-methylbenzylurea residues on the resorcinarene skeleton linked through a hexyl or dodecyl spacer having amide linkages have been prepared by the reactions of the corresponding octaamine derivative with (R)- and (S)-alpha-methylbenzylisocyanate, respectively. In chloroform, the urea-functionalized resorcinarenes with hexyl spacers form intramolecular hydrogen bonds by bundling the urea and amide residues in a cyclic fashion to give a self-folding cavitand. The urea and amide residues are cooperatively oriented in the same direction to result in asymmetric hydrogen-bonding belts. Unique circular dichroism (CD) bands are induced in the absorption wavelength ranges of the macrocyclic skeleton, caused by a chirality transmission from their chiral urea termini through hexyl spacers in the self-folded conformation. On the other hand, urea-functionalized resorcinarenes with a longer dodecyl spacer do not show such unique CD bands on the macrocycle, because of their weaker propensity for hydrogen bond formation. The characteristic CD bands of the urea-functionalized self-folding macrocycles disappeared upon complexation with anions such as chloride and bromide, reflecting breaking of the intramolecular hydrogen-bonding belts.     

Photophysical and anion sensing properties of platinum(II) terpyridyl complexes with phenolic ethynyl ligands

A series of platinum(ii) terpyridyl complexes with phenolic ethynyl ligands have been synthesized and characterized. Their photophysical and sensing properties towards anions such as fluoride, acetate and dihydrogenphosphate have been investigated. These complexes show a colorimetric response and fluorescence quenching in the presence of anions including fluoride, acetate and dihydrogenphosphate, and selective sensing towards fluoride in some cases. The sensing mechanism has been investigated by spectrophotometric and (1)H NMR titration.     

Urea-, squaramide-, and sulfonamide-based anion receptors: a thermodynamic study

In this work, we compare the anion-binding capabilities of receptors 1-5, characterized by similar structures, but possessing different hydrogen-bond-donor moieties (urea, squaramide, and sulfonamide). The presence of chromophoric substituents on the receptor's skeleton allowed the determination of association constants by performing UV/Vis titrations with the investigated anions on solutions of the receptors in pure acetonitrile. Additional quantitative studies of the anion-binding properties of receptors 1-5 were performed by isothermal titration calorimetry (ITC). The experimental results indicated that 1 and 2 formed 1:1 hydrogen-bonded complexes with most of the anions investigated. In the case of receptors 3-5, the formation of the 1:1 adduct was observed only with anions of low basicity (i.e., chloride, bromide, iodide, and hydrogen sulfate). With more basic anions (i.e., acetate and dihydrogen phosphate), both spectrophotometric and ITC titrations accounted for the deprotonation of the sulfonamide group, involving the formation of the conjugated base of the receptor.     

A ferrocene-based heteroditopic ligand for electrochemical sensing of cations and anions

A ferrocene-based heteroditopic receptor containing urea and crown ether units shows electrochemical responses to dihydrogenphosphate and fluoride anions. K+ cations can only be detected in the presence of dihydrogenphosphate.     

Crystal Structures of Fluoride and Chloride Complexes of Tris[（2-benzimidazolyl）methyl]amine

The crystal structures of fluoride and chloride complexes of tris[（2-benzimidazolyl）methyl]amine 1 were characterized by X-ray crystallography. 1 adopts （73 symmetrical geometry and cone-like conformation so as to allow its three NHs to associate with the anions through hydrogen bonds. Despite the different sizes of the anions, the two crystals are unexpectedly isostructural. The binding ability of the anions of 1 in solution was also studied by using of UV-vis spectroscopy.     

Formation of hydrogen-bonded complexes of 3,3′,5,5′-tetrabromo-2,2′-biphenol with MTBD and triethylamine

The complexes of 3,3′,5,5′-tetrabromo-2,2′-biphenol (TBBPh) with 7-methyl-1,5,7-triazabicyclo[4.4.0]dec-5-ene (MTBD) and triethylamine (TEA) were studied by FTIR spectroscopy. In chloroform and in acetonitrile a proton transfer from TBBPh to N-bases (MTBD, TEA) occurs. In chloroform solution the protonated N-base molecules are hydrogen-bonded to the deprotonated TBBPh molecules, whereas in acetonitrile the complexes dissociate. The intra- as well as intermolecular hydrogen bonds within the chains show large proton polarizability.     

Conformational control of selectivity and stability in hybrid amide/urea macrocycles

The anion-binding properties of two similar hybrid amide/urea macrocycles containing either a 2,6-dicarboxamidophenyl or a 2,6-dicarboxamidopyridine group are compared. Significant differences in anion affinity and mode of interaction with anions are attributed to the presence of intramolecular hydrogen bonds in the pyridine system. In fact, remarkably, the phenyl macrocycle undergoes amide hydrolysis under neutral conditions in DMSO/water. The anion binding abilities of the receptors are compared to those of acyclic analogues of the macrocycles that show that the phenyl receptor behaves in a similar fashion to acyclic urea-containing receptors (i.e., showing little selectivity amongst oxo anions), whilst the pyridine-containing receptor shows a high affinity and selectivity for carboxylates.     

Anion Recognition with Hydrogen‐Bonding Cyclodiphosphazanes

Modular cyclodiphosph(V)azanes are synthesised and their affinity for chloride and actetate anions were compared to those of a bisaryl urea derivative ( 1 ). The diamidocyclodiphosph(V)azanes cis‐[{ArNHP(O)(μ‐tBu)}₂] [Ar=Ph ( 2 ) and Ar=m‐(CF₃)₂Ph ( 3 )] were synthesised by reaction of [{ClP(μ‐NtBu)}₂] ( 4 ) with the respective anilines and subsequent oxidation with H₂O₂. Phosphazanes 2 and 3 were obtained as the cis isomers and were characterised by multinuclear NMR spectroscopy, FTIR spectroscopy, HRMS and single‐crystal X‐ray diffraction. The cyclodiphosphazanes 2 and 3 readily co‐crystallise with donor solvents such as MeOH, EtOH and DMSO through bidentate hydrogen bonding, as shown in the X‐ray analyses. Cyclodiphosphazane 3 showed a remarkably high affinity (log[K]=5.42) for chloride compared with the bisaryl urea derivative 1 (log[K]=4.25). The affinities for acetate (AcO^?) are in the same range ( 3 : log[K]=6.72, 1 : log[K]=6.91). Cyclodiphosphazane 2 , which does not contain CF₃ groups, exhibits weaker binding to chloride (log[K]=3.95) and acetate (log[K]=4.49). DFT computations and X‐ray analyses indicate that a squaramide‐like hydrogen‐bond directionality and C_α?H interactions account for the efficiency of 3 as an anion receptor. The C_α?H groups stabilise the Z,Z‐ 3 conformation, which is necessary for bidentate hydrogen bonding, as well as coordinating with the anion.     

Visual detection of anions by a novel isothiourea-based chromophore.

S-Methyl-N-methyl-N'-(4-(N",N"-dimethylamino)phenyl)isothiourea, a novel isothiourea-based chromoionophore for anions, was synthesized. The reactivity for several anions was estimated by a visual method and UV-vis spectroscopy. By the addition of acetate ion, a blue shift in the absorption spectrum was observed in CHCl3, and the solvent color changed from yellow to colorless. These changes indicated that bound acetate ion interfered with the intramolecular charge transfer from the nitrogen atom of the diethylamino group to the isothiourea moiety. The addition of chloride ion caused a red shift of the chromophore and solvent color remained yellow. By the addition of dihydrogenphosphate ion, the precipitate was formed immediately. These anion-dependent natures of the chromoionophore allowed us to detect acetate and phosphate ions easily.     

Mass spectrometric study of oligourea macrocycles and their anion binding behavior

Two series, one of tris‐urea macrocycles and another of hexakis‐urea macrocycles, are examined by (tandem) Fourier‐transform ion cyclotron resonance (FTICR) mass spectrometry with respect to their fragmentation patterns and anion binding properties. All macrocycles are based on two different building blocks, one of which is a very rigid xanthene unit and the other one is a more flexible diphenyl ether. The composition and the sequence of these units thus determine their flexibility. During the fragmentation of deprotonated oligourea macrocycles in the gas phase, one urea N? CO bond is cleaved followed by a scrambling reaction within the macrocycle structure. Consequently, fragments are observed that deviate from those that would be expected from the sequence of the subunits. Interesting anion binding properties involve the simultaneous recognition of two chloride anions by one of the hexakis‐urea macrocycles, whose flexibility allows this host to form a double‐helical structure. Flexibility also determines which of the hexameric receptors bears a high sulfate affinity. The interaction energy between some of the macrocycles and sulfate is high enough to even stabilize the intrinsically unstable sulfate dianion. Copyright © 2009 John Wiley & Sons, Ltd.     

Bipyrrole- and dipyrromethane-based amido-imine hybrid macrocycles. New receptors for oxoanions

Three new amido-imine-type hybrid macrocycles based on substituted pyrrole units have been synthesized and shown to act as effective receptors for oxoanions in the solid state and in acetonitrile solution. One of the macrocycles in question, compound 15, was characterized by X-ray diffraction analysis as the free macrocycle and as a complex with sulfuric acid. A comparison of the resulting structures reveals that this receptor is capable of undergoing a conformational change and, as a consequence, varying the number of donor sites that can interact with a bound substrate. This system and the other two new receptors described in this work (macrocycles 14 and 16, respectively) display a high affinity toward oxoanions (studied as their tetrabutylammonium (TBA) salts), with association constants on the order of 10(7) M-1 being determined in acetonitrile solution using standard UV-vis spectroscopic titration methods. A competitive titration method was used to determine affinity constants in excess of ca. 10(6) M-1. Two of the receptors (14 and 15) were found to bind acetate, hydrogen sulfate, and dihydrogen phosphate anion well, and the bipyrrole-based receptor (14) was also found to bind the perrhenate anion. In contrast, the bis-dipyrromethane-derived receptor (16) was found to bind chloride anion preferentially. The unusual selectivity displayed by 16 for this spherical anion was rationalized on the basis of single-crystal X-ray diffraction data and DFT modeling calculations, which revealed a rigid structure appropriately suited for chloride anion recognition.     

Solvent-stabilized molecular capsules

Pyrrogallolarenes 2 were prepared by acid-catalyzed condensation of pyrrogallol with aldehydes. Compound 2a crystallizes from a methanol solution of quinuclidine hydrochloride to give a dimeric molecular capsule surrounding one disordered quinuclidinium cation. The molecules of 2a are connected by direct hydrogen bonds and by bridging methanol and water molecules. The chloride anion is positioned outside the capsule and is hydrogen bonded to the hydroxy groups of 2a. The shortest distance between the cation and anion was found to be 6.7 A. Crystallization of 2b from aqueous acetonitrile resulted in a dimeric capsule linked by a polar belt of 16 hydrogen bonding water molecules. Four acetonitrile molecules occupy the cavity of this dimeric capsule and assume two binding sites that differ in hydrogen bonding and electronic environment. Compounds 2 also form hydrogen-bonded dimeric molecular capsules in alcohols and aqueous acetonitrile solutions. These assemblies readily encapsulate tetramethylammonium, tetramethylphosphonium, quinuclidinium, and tropylium cations to give complexes stable on the NMR time scale at 233 K.     

Triangular Halogen Bond and Hydrogen Bond Supramolecular Complex Consisting of Carbon Tetrabromide,Halide, and Solvent Molecule： A Theoretical and Spectroscopic Study

The theoretical calculation and spectroscopic experiments indicate a kind of triangular three bonding supramolecular complexes CBr4…X^-…-H-C, which consist of carbon tetrabromide, halide, and protic solvent molecule （referring to dichloromethane, chloroform and acetonitrile）, can be formed in solution. The strength of halogen and hydrogen bonds in the triangular complexes using halide as common acceptor obeys the order of iodide〉bromide〉chloride. The halogen and hydrogen bonds work weak-cooperatively. Charge transfer bands of halogen bonding complexes between CBra and halide are observed in UV-Vis absorption spectroscopy in three solvents, and then the stoichiometry of 1：1, formation constants K and molar extinction coefficients ε of the halogen bonding complexes are obtained by Benesi-Hildebrand method. The K and ε show a dependence on the solvent dielectric constant and, on the whole, obey an order of iodide〉bromide〉chloride in the same solvents. Furthermore, the C-H vibrational frequencies of solvent molecules vary obviously with the addition of halide, which indicates the C-H…X- interaction. The experimental data indicate that the halogen bond and hydrogen bond coexist by sharing a common halide acceptor as predicted by calculation.     

Anion-induced switching of the helical orientation of a chiral indolocarbazole dimer

An indolocarbazole dimer, containing chiral urea appendages, that adopts a helically folded conformation by intramolecular hydrogen bonds as proven by ¹H NMR and circular dichroism (CD) spectroscopy has been prepared. Owing to the preferential formation of one helical conformer, strong CD signals appear in relatively non-polar solvents such as chloroform (CHCl₃) and dichloromethane (CH₂Cl₂) but the signal is negligible in dimethyl sulfoxide (DMSO). In addition, the optical rotation of the dimer is highly sensitive to the polarity of solvents. For example, the magnitude of the specific rotation ([α]_D) is ? 934° in CH₂Cl₂ and ? 657° in CHCl₃ but it is only ? 75° in DMSO. These observations suggest that the dimer folds to a helical structure by intramolecular hydrogen bonds in relatively non-polar solvents but exists in an unfolded extended conformation in polar solvents such as DMSO. The dimer strongly binds anions such as chloride, acetate and sulfate by multiple hydrogen bonds. In addition, anion binding leads to considerable CD spectral changes with the different pattern and degree of Cotton effects depending on the kind of anions. The dimer may be therefore utilised for the construction of an anion-responsive chiroptical sensor or switch.     

Cooperative effect of hydrogen bonds in the complexes of aliphatic alcohols with proton acceptors in chloroform

Effect of solvation on the frequency of stretching vibrations of O-H groups of aliphatic alcohols in complexes with acetonitrile, dimethyl sulfoxide, diethyl ether, pyridine, tetrahydrofuran, and triethylamine in various media was studied by IR spectroscopy. We found that the strength of hydrogen bonds in the studied complexes increased considerably at the interaction with chloroform as a solvent. The contribution of cooperative effect was estimated. The enthalpies of cooperative effect in the complexes consisting of three different molecules are estimated for the first time.     

Diorganotin(IV) dithiocarbamate complexes as chromogenic sensors of anion binding

One dinuclear chlorodiphenyltin (IV) dithiocarbamate complex (1) and four mononuclear complexes of general formula Ph₂Sn(S₂CNR)Cl (2, 3, 5, and 6) have been synthesized and characterized both in solid-state and solution. X-ray structures for complexes 1, 3 and 6 demonstrated a five-coordination geometry around of tin atoms, in which dithiocarbamate ligand chelates asymmetrically the metal center. As shown by ¹¹⁹Sn NMR spectroscopy, five-coordination geometry observed in the solid-state remains in solution. The stability of these chlorodiphenyltin(IV) dithiocarbamate complexes in the presence of biologically relevant anions such as acetate, dicarboxylates of general formula ^?OOC-(CH₂)_n-COO^? (n = 2–8), dihydrogenphosphate, hydrogensulfate, and halides has been examined in acetonitrile solutions. For all of these organotin(IV) complexes the displacement of the coordinated ligands (i.e., chloride and dithiocarbamate) from the organotin(IV) moiety occurred in the presence of monoanions like acetate, dihydrogenphosphate, hydrogensulfate and fluoride. A stepwise mechanism for ligand exchange is proposed based on UV–Vis, ¹H, ¹³C and ¹¹⁹Sn spectroscopic data, as well as mass spectrometry. From UV–Vis titration experiments it was found that dicarboxylates with small spacers like malonate and succinate, acted differently in the exchange of the dithiocarbamate group in comparison to other monoanionic O donor ligands or dicarboxylates with longer chains, perhaps by following an intramolecular displacement of the coordinated ligand.The lability of these organotin(IV) dithiocarbamate compounds in solution hampers their use as stably host for anions, however, by taking advantage of the intrinsic chromogenic properties of free dithiocarbamate anions, or by attaching dithiocarbamate groups to well-known fluorescent moieties such as antracene, these complexes can sense the presence of O-donor anions at very low concentrations by displacement of the metal-coordinated dithiocarbamate.     

Quinoxaline-bridged porphyrinoids

Quinoxaline-bridged porphyrinoids (3), the first macrocycles containing dipyrrolylquinoxaline (DPQ, 1) subunits, were synthesized from the condensation of the diformyl-substituted DPQ derivatives (2) and 1,8-diaminoanthracene. The resulting structures were confirmed by X-ray analyses, which showed encapsulation of CHCl(3) molecules within the columnar channels established by the stacked arrangement of the individual macrocycles. The solution phase interactions with fluoride and dihydrogenphosphate anions were studied in the case of the unsubstituted system 3a in CH(2)Cl(2). The binding affinities for these anions, studied at the tetrabutylammonium salts, were found to be enhanced relative to those of the simple, unsubstituted monomeric DPQ "parent" system (1a), presumably as the result of the combined effects of preorganization and cooperative binding permitted by the pyrrole NH donor groups. Positive homotropic allosteric anion binding was observed and is ascribed to the structurally coupled nature of the two binding cavities present in the macrocycles. Support for this latter contention came from energy minimization studies.     

Synthesis and characterization of two intensely colored tris(benzoylcyanoxime)iron(II) anionic complexes

Two intensely blue-colored complexes, P(C 6H 5) 4[Fe(BCO) 3] ( 1) and Na[Fe(BCO) 3] ( 2), where BCO (-) is the benzoylcyanoxime anion, have been prepared and characterized in solution and in the solid state. The crystal structure of 1 has been determined at several temperatures (100, 155, 225, and 293 K) and consists of layers of P(C 6H 5) 4 (+) cations and [Fe(BCO) 3] (-) anions. The latter exist as a pair of fac-Delta and Lambda enantiomers in a monoclinic unit cell in the P2(1)/ n space group. Iron(II) has a trigonal-prismatic N 3O 3 coordination environment with average Fe-N and Fe-O bond distances of 1.866 and 1.956 A, respectively, bonds that are unusually short and indicate a (1)A 1g low-spin ground state for iron(II). A sample of 1 prepared with iron-57 has been studied by Mossbauer spectroscopy between 4.2 and 430 K and found to be low-spin iron(II) in studied temperature range. The stepwise formation constants for 1 in aqueous solution at 296 K and pH of 7 are log beta 1 = 0.85 +/- 0.1, log beta 2 = 3.55 +/- 0.15, and log beta 3 = 6.36 +/- 0.15. Both 1 and 2 exhibit irreversible oxidation of iron(II) at approximately 1.0 V, indicating a significant degree of the ligand-to-iron charge transfer. Thus, 1 and 2 are rare examples of highly colored iron(II) anionic complexes that do not contain aromatic heterocyclic amine ligands, such as bipyridine or phenanthroline.     

Capillary electrophoresis of methyl-substituted phenols in acetonitrile

The separation of mono- and dimethylphenols by capillary electrophoresis in pure acetonitrile was investigated. In acetonitrile, uncharged phenols interact with background electrolyte anions forming negatively charged complexes, which can be separated from each other by capillary electrophoresis. The background electrolyte anions tested were acetate, bromide and chloride. The calculated formation constants for phenol–anion complexes were highest with acetate and smallest with bromide. Complex formation was found to be sensitive to traces of water in the background electrolyte. The separation of methylphenols was also carried out in acetonitrile at high pH using background electrolytes prepared from diprotic acids and tetrabutylammonium hydroxide. At high pH the phenols were partly dissociated, providing an additional mechanism for the separation. All methylphenols were separated with the use of malonate background electrolyte. However, this approach was prone to interference from methanol resulting from the tetrabutylammonium hydroxide solution.