Adsorption and Reaction of CN + O → OCN on Cu(100) Surface: A Density Functional Theory Study

The adsorption and reaction of O + CN → OCN on Cu(100) are studied by using density functional theory and cluster model.Cu14 cluster model is used to simulate the surface.The calculated results show that the OCN species with the molecule perpendicular to the surface via N atom (N-down) is more favorable than other adsorption models, and the N-down at the bridge site is the most favorable.For N-down, calculated OCN symmetric and asymmetric stretching frequencies are all blue-shifted compared with the calculated values of free and in good agreement with the experiments.The charge transfer from the surface to the OCN species leads to that the bonding of OCN to the metal surface is largely ionic.The present studies also show that CN with the molecule perpendicular to the surface via C atom (NC-down) at the top site is the most stable.Except NC-down at the top site, the calculated CN stretching frequencies are all red-shifted.With O coadsorbed at the hollow site, the adsorption of NC-down at the next nearest bridge or top site is energetically more favorable than that at the adjacent hollow site.The reaction of O + CN → OCN on Cu(100) has no energy barrier via both Eley-Rideal and Langmuir-Hinshelwood processes.     

H2O and H2 interaction with ZnO surfaces: A MNDO,AM1, and PM3 theoretical study with large cluster models

We investigated the adsorption and heterolytic dissociation of H₂O and H₂ molecules on a (ZnO)₂₂ cluster corresponding to ZnO (0001), (000(OVERBAR)1), and (10(OVERBAR)10) surfaces using MNDO , AM 1 and PM 3 semiempirical procedures. The geometry of the adsorbed molecule has been optimized in order to analyze binding energies, charge transfer, and preferential sites of interaction. The adsorbed species interact most strongly when it is bonded to the twofold coordinated zinc atom of the cluster surface. The interaction of the H₂O molecule with the surface of ZnO has a charge transfer from H₂O to the surface ranging between 0.17 and 0.27 au. The neighboring atoms of the surface are the main receptors during the process of charge transfer. Our results indicate that there is a weak bonding of the hydrogen atom from OH with the oxygen surface atom that could produce the O(SINGLE BOND)H·O band. The interaction of the H₂ molecule with the surface is generally weak and only the PM 3 method yields a strong binding energy for this interaction. There is a charge transfer from the H₂ molecule to the surface. The chemisorption of H on oxygen atom of the surface transfer charge from the surface to the H. We also calculated the vibrational analyses for these interactions on ZnO surface and compared our results with available experimental data. © 1996 John Wiley & Sons, Inc.     

Poly[[diaquabis(μ2‐1‐oxo‐2,6,7‐trioxa‐1‐phosphabicyclo[2.2.2]octane‐4‐carboxylato)copper(II)] dihydrate]

The asymmetric unit of the title complex, {[Cu(C₅H₆O₆P)₂(H₂O)₂]·2H₂O}_n, consists of half a Cu atom, one complete 1‐oxo‐2,6,7‐trioxa‐1‐phosphabicyclo[2.2.2]octane‐4‐carboxylate anion ligand and two non‐equivalent water molecules. The Cu atom lies on a crystallographic inversion centre and has an elongated axially distorted octahedral environment. A two‐dimensional layer structure parallel to (100) is formed as a result of the connectivity brought about by each anion bonding to two different Cu atoms via a carboxylate O atom and a bridging O atom of a C—O—P group. The water molecules participate in extensive O—H...O hydrogen bonding. Neighbouring layers are linked together by intermolecular hydrogen‐bonding interactions. The crystal structure is characterized by intra‐ and interlayer motifs of a hydrogen‐bonded network. This study demonstrates the usefulness of carboxylates with caged phosphate esters in crystal engineering.     

Density Functional Theory Study on the Adsorption of HCNH and CNH2 on Cu（100） Surface

The HCNH and CNH2 adsorption on different coordination sites of Cu（100） was theoretically studied considering the cluster approach. The present calculations show that the bridge site is the most favorite for CNH2 perpendicularly adsorbed on the Cu（100） surface via the C atom. For HCNH absorbed on the Cu（100） surface, the parallel adsorption mode with the C and N atoms nearly directly above the adjacent top sites of Cu（100） surface is the most favored. Both CNH2 and HCNH are strongly bound to the Cu（100） surface with CNH2 which is lightly stable （2.51 kJ·mol^-1）, indicating that both species may be co-adsorbed on the Cu（100） surface.     

Pd(Cu)在MgO(100)表面吸附CO和O2的理论研究

采用固体镶嵌势能模型和DFT/B3LYP方法研究了在Pd/MgO和Cu/MgO表面吸附CO和O₂分子的电子性质. 计算结果表明, 在完美MgO(100)表面Pd原子对CO和O₂的吸附能分别为206.5和84.8 kJ/mol, 因此可知Pd原子更容易吸附CO分子; 而当Pd原子附着于有氧缺陷的MgO表面时, 它对两种分子的吸附都非常弱. 相反, 附着于MgO表面的Cu原子对O₂分子的吸附更为有利, 其吸附能在140～155 kJ/mol之间. 研究结果还表明, 对于双分子吸附体系, 即CO＋CO, CO＋O₂, O₂＋O₂体系, 双分子之间的结合力可减小完美MgO表面上Pd原子与被吸附分子的相互作用, 使吸附能减少了46～96 kJ/mol. 而对于在MgO表面上的Cu原子, 只有O₂＋O₂ 体系使吸附能减少了大约50～71 kJ/mol.     

洁净和氧吸附的Cu(100)表面重构的理论研究

The interaction of atomic oxygen with the clean Cu(100) surface has been studied by means of cluster and periodic slab models density functional theory in the present paper. The Cu(4,9,4) cluster and a three-layer slab with c(2×2) structure are used to model the perfect Cu(100) surface. Three possible adsorption sites,top, bridge and hollow site, were considered in the calculations. The predicted results show that the hollow site is the prefer site for atomic oxygen adsorbed on Cu(100) surface energetically. This is in good agreement with the experiment. The calculated binding energies are respective 2.014, 3.154 and 3.942 eV for top, bridge and hollow sites at mPW1PW91/LanL2dz level for the cluster model. The geometry of Cu(100) surface has also been optimized theoretically with various density functional methods and the results show that the prediction from the B3PW91/LanL2dz and mPW1PW91/LanL2dz reproduce the experimental observation.The frontier molecular orbitals and partial density of states analysis show that the electron transfer from the d orbital of substrate to the p orbital of the surface oxygen atom.     

H2O在Cu(100)表面吸附的从头算研究

用量子化学从头计算方法,以原子簇Cu₅为模拟表面,研究了水在Cu(100)面上不同吸附位的吸附情况,结果表明:水分子通过氧原子与表面成键,顶位是其最佳吸附位,吸附能约为70kJ/mol,平衡距离为0.213nm,氢原子远离表面.在氧原子不加极化函数时,水分子的二次轴垂直于表面时能量最低,但倾斜至50°所需能量仅在10kJ/mol以内.当考虑O原子d轨道的影响时,水分子倾斜时能量较低,得到了与实验相符的吸附构型.另外还研究了表面电荷对吸附体系的影响,结果表明:表面带正电荷时,水与表面间的相互作用增强,水上所转移电荷增多,Cu-O间平衡距离减小;表面带负电荷时,情况与之相反,且氢原子靠近表面时,势能曲线有最低点.     

Density Functional Theory Studies on the Adsorption of NH2NO2 on Al13 Cluster

Density functional theory method with full geometry optimization was used to study the adsorption of nitroamine (NH₂NO₂) on Al₁₃ cluster. Both dissociative and nondissociative adsorption structures were predicted with different NH₂NO₂ molecule orientations on Al₁₃ cluster surfaces. In dissociative chemisorption, the main decomposition products of NH₂NO₂ are O atom(s) and NH₂NO or NH₂N species. The O atoms being ruptured from the N?CO bond form strong Al?CO bonds with the neighboring Al around the adsorbed sites. In addition, the species obtained as a result of O atom elimination remains bonded to the surface. The largest adsorption energy is ?737.66?kJ/mol when the NH₂NO₂ molecule decomposes into two O atoms and a NH₂N fragment. For nondissociative adsorption, the seriously deformed nitroamine forms various N?CO?CAl bonding configurations with Al. The significant charge transfer occurs for all adsorption configurations. The most charge transfer is 2.068 e from the Al cluster surface to the fragments of the decomposed NH₂NO₂. The change of the electronic structures is obvious due to the adsorption or dissociation of NH₂NO₂ molecule. Nitroamine readily oxidizes the aluminum surface of the Al₁₃ cluster.     

ZSM-5分子筛氮化的密度泛函理论研究

利用量子化学中的密度泛函理论,基于ZSM-5分子筛的8T簇模型,在Gaussian 98程序中采用B3LYP方法和6-311G(d,p)基组计算了ZSM-5分子筛中氮的最佳取代位置.计算结果表明,分子筛骨架中氧原子被氮原子取代的最佳位置为O11和O21位.由于位于B酸位上的O11原子是氮原子的最佳取代位置之一,所以氮化可以减弱分子筛表面的B酸强度.     

乙腈、苯基氰在Cu(111)与Pd(100)表面上的吸附与反应

用高分辨电子能量损失谱(HREELS~*)对CH_3CN(乙腈)及C_6H_5CN(苯基氰)在清洁与氧覆盖的Cu(111)及Pd(100)表面上的吸附及其反应进行了研究。从198 K时CH_3CN吸附在Cu(111)及Pd(100)表面上的高分辨电子能量损失谱(HREELS)中观察到v(C≡N)几乎消失, 并在195 meV处出现一个较弱的v(C=N)谱带, 表明CH_3CN在吸附过程中C≡N再杂化为C=N,C,N原子分别与金属表面原子键合并C=N平行于表面。从198 K时C_6H_5CN在Pd(100)及Cu(111)上的HREELS表明C_6H_5CN的环平面与CN平行于金属表面。在185K时C_6H_5CN在氧覆盖的Pd(100)表面上的HREELS与其在清洁表面上的相似。并未观察到覆盖氧增强了C_6H_5CN在Pd(100)上的吸附及其它效应。C_6H_5CN吸附在氧覆盖的Cu(111)表面上产生了C_6H_5CNO的特征谱带。     

A density-functional-theory study of atomic nitrogen abstraction from Si(100)-(2 x 1) by a gaseous O(3P) atom

We have employed density-functional theory (DFT) to investigate the abstraction of a nitrogen atom from the Si(100)-(2 x 1) surface by a gas-phase O(3P) atom for different initial bonding configurations of nitrogen at the surface. For the N-Si(100) structures investigated, nitrogen abstraction by an O(3P) atom is predicted to be exothermic by at least 1.9 eV. Abstraction in a single elementary step is found only for the interaction of an O(3P) atom with nitrogen bound in a coordinatively saturated configuration, and an energy barrier of 0.20 eV is computed for this reaction. For nitrogen bound in coordinatively unsaturated configurations, abstraction is predicted to occur by precursor-mediated pathways in which the initial O-surface collision results in the formation of a N-O bond and the concomitant release of between 2.7 and 4.8 eV of energy into the surface, depending on the initial N-Si(100) structure. This initial step produces different surface structures containing an adsorbed NO species, which can then undergo a series of elementary steps leading to NO desorption. Since the barriers for these steps are found to be less than 1 eV in all cases, a significant excess of energy is available from initial N-O bond formation that could activate NO desorption within no more than a few vibrational periods after the initial gas-surface collision. Nitrogen abstraction by such a pathway is essentially an Eley-Rideal process since NO desorption occurs rapidly after the initial gas-surface collision, without the reactants thermally accommodating with the surface. These computational results indicate that nitrogen abstraction by gaseous O(3P) atoms should be facile, even at low surface temperatures, if nitrogen is bound to the Si(100) surface in coordinatively unsaturated configurations.     

Effects of coverage and solvent on H2S adsorption on the Cu(100) surface: A DFT study

Density functional theory is used to investigate the effects of coverage and solvent on the adsorption of H₂S on the Cu(100) surface. In this work, the adsorption energies, structural parameters and Mulliken charges of the adsorbed H₂S are calculated. The results show that when the coverage of H₂S is high (1 ML), H₂S molecule cannot adsorb on the Cu(100) surface spontaneously, and the decomposition of H₂S preferentially occurs at the bridge site. When the coverage decreases to 1/4 ML coverage, H₂S molecule does not exhibit the decomposition, but bonds to the top Cu atom with the tilted adsorption. Furthermore, when the coverage is 1/9, 1/16 and 1/25 ML, H₂S adsorption remains stable. In addition, the stability of H₂S adsorption on the Cu(100) surface improves rapidly when the solvent dielectric constant (ε) increases from 1 to 12.3 corresponding to the vacuum and pyridine, respectively. For the higher ε (≥24.3), the effect of the solvent on the H₂S adsorption was greatly reduced. In this work, both coverage and solvent are shown to have an important effect on the H₂S adsorption on the Cu(100) surface, which might be useful to improve the future similar simulations. Copyright © 2015 John Wiley & Sons, Ltd.     

Cu_4簇合物“元件组装”合成及其结构与电催化作用

以元件组装方法合成了Cu4(HL)4·2H2O簇合物(H2L=N-乙氧羰基-N′-o-硝基苯基硫脲)。用X射线单晶衍射技术、核磁共振谱、红外光谱和元素分析等确定了簇合物及其相应组装元件的晶体结构和化学组成,并对簇合物的电催化性质进行了检测。结果表明,该簇合物由4个Cu(I)以M-M键构成簇核,4个硫脲配体分别以硫羰基硫原子和氮原子配位于Cu(I)构成簇合物配位结构,DPV分析显示该簇合物对O2具有较高催化活性。     

A density functional molecular dynamics study of the bonding and stability of Mg n clusters (n=2−13)

A study of the structure and the bonding nature of Mg clusters having 2 to 13 atoms has been made using the density functional molecular dynamics method within the local density approximation. The calculated lowest energy structures can be described in terms of a tetrahedron and a trigonal prism. Mg₄ and Mg₁₀ are magic clusters and Mg₁₃ is neither an icosahedron nor a cuboctahedron. The bonding nature varies from atom to atom in a cluster and the transition from weakly bonded dimer to bulk like metallic behaviour is oscillatory and slow.     

单原子Ge助剂修饰Cu(111)晶面上CO2加氢制甲醇的机理研究

针对CO₂热催化转化制甲醇过程中CO₂吸附、活化较困难及副产物较多的问题,提出采用单原子Ge助剂修饰Cu(111)晶面的解决思路,通过密度泛函理论(DFT)计算研究了CO₂在Ge-Cu(111)晶面上加氢合成甲醇的反应机理。结果表明,单原子Ge助剂的电子调控增加了与其相邻的 Cu 原子的电子云密度,使 CO₂分子在含 Ge 活性界面上的吸附能力显著增强:CO₂在 Ge-Cu(111)晶面上的吸附能约为Cu(111)晶面的1.5倍,约为Pd改性Cu(111)晶面的2.4倍,进而使逆水煤气变换(RWGS)反应路径速控步骤的活化能降低了近 20 kJ·mol^-1,同时衍生出 3条生成甲醇的 RWGS新路径;此外,Ge-Cu(111)晶面上甲酸盐路径由于速控步骤活化能大幅上升而被禁阻,进而CO及烃类等副产物选择性大幅降低,Ge-Cu(111)晶面上CO₂加氢制甲醇选择性升高。     

单原子Ge助剂修饰Cu(111)晶面上CO2加氢制甲醇的机理研究

针对CO₂热催化转化制甲醇过程中CO₂吸附、活化较困难及副产物较多的问题,提出采用单原子Ge助剂修饰Cu (111)晶面的解决思路,通过密度泛函理论(DFT)计算研究了CO₂在Ge-Cu(111)晶面上加氢合成甲醇的反应机理。结果表明,单原子Ge助剂的电子调控增加了与其相邻的Cu原子的电子云密度,使CO₂分子在含Ge活性界面上的吸附能力显著增强：CO₂在Ge-Cu(111)晶面上的吸附能约为Cu (111)晶面的1.5倍,约为Pd改性Cu(111)晶面的2.4倍,进而使逆水煤气变换(RWGS)反应路径速控步骤的活化能降低了近20 kJ·mol^-1,同时衍生出3条生成甲醇的RWGS新路径;此外,Ge-Cu(111)晶面上甲酸盐路径由于速控步骤活化能大幅上升而被禁阻,进而CO及烃类等副产物选择性大幅降低,Ge-Cu(111)晶面上CO₂加氢制甲醇选择性升高。     

Structure of valence band in cluster model for cytochrome-<Emphasis Type="Italic">c</Emphasis>-oxidase active centers

The electron structure of cluster model for active centers of cytochrome-c-oxidase has been calculated by DFT (PBE) method in 6-31G basis. The cluster model was constructed on the basis of experimental PDB-structure and included 1105 hemoprotein atoms. The valence band ceiling of cytochromeoxidase active centers is shown to be formed by the atoms of carbon and nitrogen from porphyrin ring of cytochrome heme a₃ and atoms of carbon and nitrogen from imidazol moieties of histidine connected with Cu atom in cytochrome a₃. D-orbitals of Cu and Fe atoms from heme a₃ and d-orbital of Fe atom from heme a contribute mainly to the orbital group. A conclusion is made that the catalytic activity of the structure is determined by these two types of orbitals. Cu d-orbitals of cytochrome a are substantially low in energy. It is suggested that Cu atoms of cytochrome a shift the chemical potential of d-orbitals belonging to the active center that results in their easier electron accepting and releasing. This can be a decisive factor in the electron transport process.     

甲硫醇在Cu(111)表面的解离吸附: 密度泛函理论研究

采用基于密度泛函理论的第一性原理方法和平板模型研究了CH₃SH分子在Cu(111)表面的吸附反应.系统地计算了S原子在不同位置以不同方式吸附的一系列构型, 第一次得到未解离的CH₃SH分子在Cu(111)表面顶位上的稳定吸附构型,该构型吸附属于弱的化学吸附, 吸附能为0.39 eV. 计算同时发现在热力学上解离结构比未解离结构更加稳定. 解离的CH₃S吸附在桥位和中空位之间, 吸附能为0.75-0.77 eV. 计算分析了未解离吸附到解离吸附的两条反应路径, 最小能量路径的能垒为0.57 eV. 计算结果还表明S―H键断裂后的H原子并不是以H₂分子的形式从表面解吸附而是以与表面成键的形式存在. 通过比较S原子在独立的CH₃SH分子和吸附状态下的局域态密度, 发现S―H键断裂后S原子和表面的键合强于未断裂时S原子和表面的键合.     

Theoretical Study on Adsorption and Diffusion of N Atoms on Cu Low-index Surface

The adsorption and diffusion of N atoms on the three low-index Cu planes were studied using 5-parameter Morse potential (5-MP) method, and the best theory-experiment agreement was obtained. N atoms of Cu(100) surface sit on the fourfold hollow site with the vertical height of 0.018 nm closely coplanar with the topmost copper layer, and the four Cu-N bond lengths are 0.182 nm and the fifth Cu-N distance is 0.199 nm. For Cu(111) system, the existence of aberrant Cu(100) reconstructed structure is approved at higher coverage, and at low coverage the structure is almost an ideal Cu(111) surface structure. With respect to Cu(110) system, the N atoms are adsorbed at LB and H3 sites, not at SB site. The diffusion passage and diffusion barrier of adsorbed N atoms were also studied.     

Binding interactions and Raman spectral properties of pyridine interacting with bimetallic silver-gold clusters.

The binding interactions between pyridine and bimetallic silver-gold clusters are investigated using density functional theory (DFT). The binding energies of pyridine-bimetallic cluster complexes indicate that the bonding depends strongly on the binding site (Au or Ag atom) and bonding molecular orbitals in a given configuration. The donation of the lone-pair electrons of the nitrogen of pyridine to an appropriate unoccupied orbital of each metal cluster plays an important role. The low-lying excited states and charge-transfer states of four stable complexes of interest are calculated on the basis of a time-dependent DFT method. In nonresonance Raman scattering processes, the influence of binding interactions on the relative Raman intensity of totally symmetric pyridine vibrational modes is discussed. These calculated relative Raman intensities are compared with observed surface-enhanced Raman spectra of pyridine adsorbed on silver-gold alloy surfaces.