Substituent effect of large conjugate groups on the DNA base pair derivatives: Density functional study

The substituent effects caused by 2‐nitro‐naphthalen (aNO₂), 2‐hydroxyl‐naphthalen (aOH), 1‐nitro‐4‐vinyl‐benzene (bNO₂), and 1‐hydroxyl‐4‐vinyl‐benzene (bOH) have been investigated in this report. The geometries of various substituted base pairs have been optimized using the B3LYP method at the 6‐31G* level with no constraints. The vertical ionization potential energy has been calculated. Natural bond orbital (NBO) and CHelp analyses have also been carried out on both the neutral and cationic systems at the same level. The outcomes show that the hydrogen bond lengths of these substituted base pairs are similar to unsubstituted bases, while the geometries of the substituted bases have an interesting aspect; i.e., the substituent and the substituted base are nonplanar when the substituted base is pyrimide, while it is coplanar when the substituted base is purine. The stabilization energies changed slightly as compared with the corresponding A:T or G:C base pairs. NBO analysis shows that charge transfer is the largest in aOH‐T:A, while it is small in the other derivatives. Population analysis shows that the NPA and Mulliken charge of H has a relationship with the H‐bond lengths, while that of Chelp does not. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Density functional theory study on electron and hole transport properties of organic pentacene derivatives with electron-withdrawing substituent

Attaching electron-withdrawing substituent to organic conjugated molecules is considered as an effective method to produce n-type and ambipolar transport materials. In this work, we use density functional theory calculations to investigate the electron and hole transport properties of pentacene (PENT) derivatives after substituent and simulate the angular resolution anisotropic mobility for both electron and hole transport. Our results show that adding electron-withdrawing substituents can lower the energy level of lowest unoccupied molecular orbital (LUMO) and increase electron affinity, which are beneficial to the electron injection and ambient stability of the material. Also the LUMO electronic couplings for electron transport in these pentacene derivatives can achieve up to a hundred meV which promises good electron transport mobility, although adding electron-withdrawing groups will introduce the increase of electron transfer reorganization energy. The final results of our angular resolution anisotropic mobility simulations show that the electron mobility of these pentacene derivatives can get to several cm(2) V(-1) s(-1), but it is important to control the orientation of the organic material relative to the device channel to obtain the highest electron mobility. Our investigation provide detailed information to assist in the design of n-type and ambipolar organic electronic materials with high mobility performance.     

Substituent effects on the photoelectron spectra of benzene derivatives

Systematics in the ionization energies corresponding to the different π orbitals of para, meta and ortho-disubstituted benzenes obtained from PES have been investigated. The data have been discussed in terms of correlations with substituents constants and such correlations are shown to provide the basis to differentiate steric from electronic effects in the case of ortho derivatives. Ionization energies from PES corresponding to the lone pair orbitals of substituents in related series of p-disubstituted benzenes are shown to vary systematically with the substituent constants.     

Substituent effects of phosphonate groups electronic repartition of π-conjugated ferrocene analogues of stilbene

The synthesis of para-substituted ferrocene analogues of stilbene was performed by using the Heck reaction, starting from vinylferrocene. The variation of the electronic density of these compounds with the electronic withdrawing strength of the substituents was studied using ¹³C NMR spectroscopy, absorption spectra and cyclic voltammetry. The correlation of Hammett constants with the redox properties of the substituted compounds using Nagy's method allowed us to revisit the determination of the Hammett constants of diethyl phosphonate ester and phosphonic acid substituents. Our measurements were in agreement with the literature except for the diethyl phosphonate group.     

Substituent effects on two-center three-electron bonds and hydrogen bonds involving unsaturated organic functional groups and an ammonia radical cation--the resonance contribution

A theoretical investigation of the substituent effects on the two-center, three-electron (2c-3e) bond involved between unsaturated functional groups and an amine nitrogen is presented. The competitive hydrogen-bonded complexes are also studied. In both cases, the bond energies are found to be in the range of 20-30 kcal mol(-1). The variation of these energies is discussed with respect to the electron-donating effect of the substitutents, as well as with respect to the alpha-bonded atom of the organic functional group (O, S, NH). For the 2c-3e bonds, the results are discussed on the basis of the differences of the ionization potential (delta IP) of the separated fragments and can be rationalized through the valence bond theory. For the hydrogen bonds, the substituent influence is discussed by using the differences of the proton affinities (delta PA) of the substrates. The resonating nature of the hydrogen bond in these cationic systems is investigated and is found to account for most of the binding energy. Marcus theory is compared with the proposed resonating model.     

Substituent effects on the proton spin-spin coupling of benzenes with side-chain interacting groups

Sixty MHz NMR proton spectra of 15 2,4-substituted benzaldehydes and 12 methylbenzenes dissolved in different solvents have been accurately analyzed. Substituent effects on the coupling constants have been determined and have been found to be additive in those trisubstituted compounds where there are neither internal hydrogen bonds or strong interacting groups present.     

Substituent effects on benzdiyne: a density functional theory study

Density functional theory (DFT) studies were performed to investigate the effect of substituents on the properties of benzdiyne derivatives. Twelve substituted benzdiynes-C(6)X(2), where X = F, Cl, Br, Me, CF(3), CN, OH, NO(2), NH(2), OMe, NMe(2), and Ph-were considered along with the unsubstituted 1,4-benzdiyne. The structures, vibrational frequencies, and IR intensities of these benzdiynes were studied with a popular three-parameter hybrid density functional (B3LYP) combined with the split-valence 6-31G(d) basis set and Dunning's correlation-consistent polarized triple-zeta (cc-pVTZ) basis set. The relative stabilities of the substituted benzdiynes were studied with the help of reaction energies of isodesmic reactions, which showed that the electron-withdrawing groups destabilized the benzdiynes more than they did the corresponding benzenes, whereas the electron-donating groups stabilized the benzdiynes more than they did their benzene counterparts. Correlation analyses revealed that field/inductive effects played a more important role than did resonance effects. The changes in atomic charges and spin populations due to the substituents were also studied. The asymmetric nu(Ctbd1;C) stretching modes obtained were close to the 1500-cm(-)(1) mark. Reinvestigation of the experimental results supported these results; a weak IR band at 1486 cm(-)(1) was assigned to this asymmetric stretching mode in C(6)(CF(3))(2) F. Some other benzdiynes also had large IR intensity values for their asymmetric nu(Ctbd1;C) vibrational modes due to the coupling with other vibrational modes. Heats of formation for the substituted benzdiynes were obtained from the reaction energies calculated at the B3LYP/cc-pVTZ level of theory.     

Substituent effects in chemical carcinogenesis: Methyl derivatives of the benzacridines

An explanation for the different carcinogenic potencies observed among methyl derivatives of the angular benzacridines is given in terms of the tendencies of these compounds to undergo specific metabolic activating reactions analogous to those of polycyclic aromatic hydrocarbons. Theoretical reactivity indices representing these reactions correlate with the carcinogenic activities of these compounds.     

Steric and electronic effects on the conformations of n-butane derivatives with trichlorosilyl, silyl and trichloromethyl groups

The molecular structure and conformation of 1,1,1,4,4,4-hexachloro-1,4-disilabutane in the gas-phase have been determined by electron diffraction and computational methods. The lowest-energy conformation has the trichlorosilyl groups anti to one another. The gauche conformation also has a shallow potential minimum, but lies about 19 kJ mol-1 above the anti form. Calculations on related butane derivatives, in which terminal methyl groups have been replaced by CCl3, SiH3 and SiCl3 groups, reveal that the conformational preferences are primarily caused by steric interactions between the terminal groups, and that it is the presence of chlorine atoms that destabilises gauche conformations. The electronegativity of the chlorine atoms has only small effects, mainly limited to the SiCl bond lengths.     

Substituent effects on the molecular and electronic structure of β-lactams

Calculations have been made of the molecular geometry and electron distribution for each of eight unfused β-lactams and thirteen fused β-Iactams, using MINDO/3: electron distributions for unfused β-lactams have been determined by ab initio calculations. Systematic variations with substituent are found in d(C-N) and d(C-O), and in the net atomic charges. The geometrical and electronic effects of imposed non-planarity at nitrogen have been investigated for the parent β-Iactam, azetidin-2-one.     

Substituent effects on the ring-chain tautomerism of some 1,3-oxazolidine derivatives

The 14 and 70 eV electron ionization mass spectra of five sets (R1 = Me, Et, i-Pr, t-Bu and Ph) of seven 2-aryl-4-R1-substituted (Ar = C6H4X; X = p-NO2, m-Br, p-Cl, H, p-Me, p-OMe and p-NMe2) (1-5) and of seven 2-aryl-5-phenyl-substituted 1,3-oxazolidines (6; for Ar, see above) were recorded to study their ring-chain equilibria in the gas phase. These equilibria were also studied by 1H NMR spectroscopy in CDCl3 for compounds 5 and 6. A few 2,4- and 2,5-dimethyl-2-aryl derivatives (7, 8: Ar = C6H4X; X = m-Br, H and p-OMe) were studied both in CDCl3 and in the gas phase. The main characteristics of the ring-chain equilibria expressed by the variable SigmaRA% of the ring and of the chain form proved to be a strong dependence on the nature of the substituents on C-2 and C-4. The results in the gas phase are compared with those in CDCl3.     

Substituent effects in the one-electron reduction of anthraquinone derivatives

Polarographic reduction against (C₂H₅)₄NBr as background in dimenthyformamide has been applied to 17 anthraquinones with - and -substituents. There are two pronounced half-waves, which correspond to two one-electron degrees of reduction, a semiquinone anion being formed as intermediate. An ESR signal is produced when this radical is formed by electrolysis with a cathode potential equal to E_1/2. The observed E_1/2 fit Hammett's equation closely. The relation E_1/2 to donor-acceptor aspects of the substituents is discussed.     

Methodologies for the synthesis of pentacene and its derivatives

In recent years, due to its high hole-mobility, high on/off current ratio and low threshold voltage, pentacene and its derivatives have found increasing application in the fabrication of light-emitting diodes, field-effect transistors and photovoltaic cells. It has also emerged as an alternative to silicon due to its similar performance to inorganic semiconductors. Pentacene cannot be isolated from the petroleum fractions like other acenes such as anthracene or tetracene, and therefore it needs to be chemically synthesized. The first successful synthesis of pentacene was reported in early 19th century where pentacene was obtained via dehydrogenation of 6,14-dihydropentacene. Since then a number of methods have been reported for the synthesis of pentacene. This review describes various strategies used for the synthesis of pentacene and its derivatives reported since 2005.     

Substituent group effects on the NQR frequency of Cl in certain chloromethane derivatives

An empirical method is suggested for estimating the NQR frequencies of substituted chloromethanes. The frequencies are given by the equation ν_Cl = ν_o + ∑_im_i, where the parameters m_i are characteristic of the substituent groups, with additive properties in the case of multiple substitution for substituted chloromethanes. The calculations reveal that (i) as in chlorobenzenes, the effect of substituent groups on the NQR frequencies is additive to a first order of approximation, (ii)the effect is much larger in chloromethanes than in chlorobenzenes, (iii) the relative effects of different substituent groups are similar in the two sets, (iv) where there is more than one substituent group their mutual interaction is of the same order of magnitude as the crystal field effects.     

Substituent and solvent effects on electronic spectra of some substituted phenoxyacetic acids

The effects of substituents and solvents have been studied through the absorption spectra of nearly 19 para- and ortho-substituted phenoxyacetic acids in the range of 200-400 nm. The effects of substituent on the absorption spectra of compounds under present investigation are interpreted by correlation of absorption frequencies with simple and extended Hammett equations. Effect of solvent polarity and hydrogen bonding on the absorption spectra are interpreted by means of Kamlet equation and the results are discussed.     

Interplay of structural dynamics and electronic effects in an engineered assembly of pentacene in a metal–organic framework

Charge carrier mobility is an important figure of merit to evaluate organic semiconductor (OSC) materials. In aggregated OSCs, this quantity is determined by inter-chromophoric electronic and vibrational coupling. These key parameters sensitively depend on structural properties, including the density of defects. We have employed a new type of crystalline assembly strategy to engineer the arrangement of the OSC pentacene in a structure not realized as crystals to date. Our approach is based on metal–organic frameworks (MOFs), in which suitably substituted pentacenes act as ditopic linkers and assemble into highly ordered π-stacks with long-range order. Layer-by-layer fabrication of the MOF yields arrays of electronically coupled pentacene chains, running parallel to the substrate surface. Detailed photophysical studies reveal strong, anisotropic inter-pentacene electronic coupling, leading to efficient charge delocalization. Despite a high degree of structural order and pronounced dispersion of the 1D-bands for the static arrangement, our experimental results demonstrate hopping-like charge transport with an activation energy of 64 meV dominating the band transport over a wide range of temperatures. A thorough combined quantum mechanical and molecular dynamics investigation identifies frustrated localized rotations of the pentacene cores as the reason for the breakdown of band transport and paves the way for a crystal engineering strategy of molecular OSCs that independently varies the arrangement of the molecular cores and their vibrational degrees of freedom.

Pentacene assembled into 1D arrays using a metal–organic framework (MOF) approach. This cofacial packing motif, which is not present in pentacene bulk, shows an interesting interplay of band-like and hopping-type transport.     

Polyrotaxane derivatives. I. Preparation of modified polyrotaxanes with nonionic functional groups and their solubility in organic solvents

Various polyrotaxane modification reactions, such as methylation, hydroxy propylation, tritylation, acetylation, trimethylsilylation, phenylcarbamation, dansylation, and nitration, were examined to obtain polyrotaxane derivatives, in which various functional groups were attached to cyclodextrin moieties. Although the nitrate could not be obtained because of significant degradation of the polyrotaxane under the conditions examined, other derivatives were successfully prepared under moderate conditions. The introduction of these functional groups and their degree of substitution were assessed with Fourier transform infrared and NMR spectroscopy. The polyrotaxane derivatives thus obtained were soluble in various organic solvents other than the conventional solvents (dimethyl sulfoxide and aqueous NaOH) used for the unmodified polyrotaxane. That is, the solubility of the polyrotaxane was drastically changed by the examined modification reactions. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 6312–6323, 2006     

The impact of regiochemistry of conjugated molecules on the performance of organic electronic devices

Organic photovoltaics and field-effect transistors have attracted considerable attention due to the easy fabrication,low cost,light weight,and flexibility.Unsymmetrical conjugated building blocks are widely utilized for the design of new organic π-functional materials in order to achieve high-performance electronic devices,which has become a hot research topic in recent years.In this review,we summarized some typical organic π-functional materials with regioregular conjugated backbones with unsymmetrical electron-deficiency moieties and focused on the influence of regiochemistry on the final device performance.