Molecular-Recognition-Directed Self-Assembly of Supramolecular Polymers

Abstract

The first part of this paper discusses the molecular design of selected examples of structural units containing taper-shaped exo-receptors and various crown ether, oligooxyethylenic, and H-bonding-based endo-receptors, which self-assemble into cylindrical channel-like architectures via principles resembling those of tobacco mosaic virus. The ability of these structural units to self-assemble via a delicate combination of exo-and endo-recognition processes will be presented. A comparison between various supramolecular (generated via H-bonding, ionic, and electrostatic interactions) and molecular “polymer backbones” will be made. The present limitations concerning the ability to engineer the structural parameters of these supramolecular channel-like architectures and some possible novel material functions derived from them will be briefly mentioned. The second part of this paper discusses our research on the molecular design of a novel class of macrocyclics which self-assemble via intramolecular recognition processes into supramolecular “rodlike” collapsed macrocyclics which display thermotropic liquid crystalline mesophases. It is demonstrated that these macrocyclics have a higher ability to form liquid crystalline phases than the corresponding linear compounds which have identical or even higher degrees of polymerization. Therefore, they represent the ideal molecular architectures which generate mesophases.     

By-design molecular architectures via alkyne metathesis

Shape-persistent purely organic molecular architectures have attracted tremendous research interest in the past few decades. Dynamic Covalent Chemistry (DCvC), which deals with reversible covalent bond formation reactions, has emerged as an efficient synthetic approach for constructing these well-defined molecular architectures. Among various dynamic linkages, the formation of ethynylene linkages through dynamic alkyne metathesis is of particular interest due to their high chemical stability, linearity, and rigidity. In this review, we focus on the synthetic strategies of discrete molecular architectures (e.g., macrocycles, molecular cages) containing ethynylene linkages using alkyne metathesis as the key step, and their applications. We will introduce the history and challenges in the synthesis of those architectures via alkyne metathesis, the development of alkyne metathesis catalysts, the reported novel macrocycle structures, molecular cage structures, and their applications. In the end, we offer an outlook of this field and remaining challenges.

The recent synthesis of novel shape-persistent 2D and 3D molecular architectures via alkyne metathesis is reviewed and the critical role of catalysts is also highlighted.     

Anion induced capsular self-assemblies

Researchers world-wide have employed diverse strategies to achieve various anion binding hosts and anion induced supramolecular architectures due to the increasing appreciation of anion receptor chemistry. Intellectual discovery of molecular capsules for the recognition of different guest species has opened up a new field of research in the area of supramolecular chemistry. This feature article aims to provide an overview of the current status and recent achievements made by us and others in the last decade in the area of anion induced construction of supramolecular capsules and anion binding in molecular capsules.     

Organocatalysis: asymmetric cascade reactions catalysed by chiral secondary amines

The utilisation of chiral secondary amines as promoters for asymmetric cascade reactions has been subject of intensive research in asymmetric organocatalysis in the past few years. Key developments in this area are highlighted in this review. As shown, these powerful synthetic methodologies serve as efficient approaches to the construction of complex chiral molecular architectures from simple achiral materials in one-pot transformations under mild conditions with high stereocontrol.     

Capturing molecules with templated materials--analysis and rational design of molecularly imprinted polymers

The creation of synthetic tailor-made receptors capable of recognizing desired molecular targets with high affinity and selectivity is a persistent long-term goal for researchers in the fields of chemical, biological, and pharmaceutical research. Compared to biomacromolecular receptors, these synthetic receptors promise simplified production and processing, less costs, and more robust receptor architectures. During recent decades, molecularly imprinted polymers (MIPs) are widely considered mimics of natural molecular receptors suitable for a diversity of applications ranging from biomimetic sensors, to separations and biocatalysis.A remaining challenge for the next generation of MIPs is the synthesis of deliberately designed and highly efficient receptor architectures suitable for recognizing biologically relevant molecules, for which natural receptors are either not prevalent, or difficult to isolate and utilize. Hence, this review discusses recent advances in synthetic receptor technology for biomolecules (e.g. drugs, amino acids, steroids, proteins, entire cells, etc.) via molecular imprinting techniques. Surface imprinting methods and epitope imprinting approaches have been introduced for protein recognition at imprinted surfaces. Imprinting techniques in aqueous solution or organic-water co-solvents have been introduced avoiding denaturation of biomolecules during MIP synthesis. In addition, improved bioreactivity of entire enzyme or active site mimics generated by molecular imprinting will be highlighted. Finally, the emerging importance of molecular modeling and molecular dynamics studies detailing the intermolecular interactions between the template species, the porogenic solvent molecules, and the involved monomer and cross-linker in the pre-polymerization solution will be addressed yielding a rational approach toward next-generation MIP technology.     

Molecular Recognition Directed Self-Assembly of Supramolecular Architectures

This paper reviews some of our research on three classes of supra-molecular architectures which are generated via various combinations of molecular, macromolecular, and supramolecular chemistry. The ability of these supramolecular architectures to form liquid crystalline phases is determined by the shape of the self-assembled architecture and will be used to visualize it via various characterization techniques. The molecular design of selected examples of structural units containing taper-shaped exo-receptors and crown ether, oligooxyethylenic, and H-bonding based endo-receptors which self-assemble into cylindrical channel-like architectures via principles resembling those of tobacco mosaic virus (TMV), of macrocyclics which self-assemble into supramolecular rigid “rodlike” architectures and of hyperbranched polymers which self-assemble.into a willowlike architecture will be discussed. In the case of TMV-like supramolecular architectures, a comparison between various supramolecular(generated via H-bonding, ionic, and electrostatic interactions) and molecular “polymer backbones” will be made. The present state of the art of the engineering of these supramolecular architectures and some possible novel material functions derived from them will be briefly mentioned.     

Coordination Molecular Architectures Based on Ag-HMT Nets

As self-assembly of the supramolecular architectures of coordination polymers is influenced by the many different factors, it is usually difficult to predict the structure of the product of self-assembly. As sequel work of our previous reports on coordination polymers with variable cavities or channels^[1], we attempt to develop rational synthesis of desired molecular architectures and describe our design and construction of supramolecular architectures based on Ag-HMT (hmt=hexamethylenetetramine) nets. HMT is a potential tetradendate ligand, and Ag¹ is flexible in coordination. We obtained a number of Ag-HMT nets in different dimension-alities, some of the Ag-HMT networks are stable, and may be further tailored to generate designed 3-D molecular architectures^[2]. In particular, the lateral positions of the hexagonal 2-D[Ag(μ₃-hmt)X] nets are occupied by small and labile ligands (X=NO₃^- or NO₂^-, which are align-ed in an alternative up/down fashion. The lateral ligands may be replaced by other functional ligands to provide new routes (see scheme below) in organising the 2-D layers into 3-D nets via linear dicarboxylates as molecular pillars or interlayer intercalation between the lateral aromatic mono-carboxylates, giving the designed 3-D molecular architectures with variable porous sizes. In this report, we will show a series of 3-D molecular architectures based on the hexagonal nets. On the other hand, when non-linear dicarboxylates are used, some other 3-D polymeric architectures can be isolated, including some of nanometer-sized channels. Study of gas absorption of the pore materials is under progress.     

Molecular dipole engineering: new aspects of molecular dipoles in molecular architecture and their functions

The assembly of molecular architectures on the basis of molecular dipoles is proposed here to be a promising tool for construction of nanomaterials and nanodevices. Three kinds of building blocks having dipoles are discussed; helical peptides, cyclic beta-peptides, and oligo(phenylene ethynylene)s having donor and acceptor substituents. Secondary interactions involving molecular dipoles are shown to be effective to control precise molecular shapes and to assemble the building blocks in a regular manner. Furthermore, molecular dipoles can generate a strong electric field at the nanoscale, which is useful for the promotion or suppression of electron transfer processes. Organic molecules with strong dipoles will therefore be applicable to various fields, such as molecular electronics and medical chemistry, as functional nanomaterials. It is expected that the chemistry of dipolar molecules will lay a firm foundation for a new interdisciplinary field, that of "molecular dipole engineering".     

Molecular Architectonics-guided Design of Biomaterials

The quest for mastering the controlled engineering of dynamic molecular assemblies is the basis of molecular architectonics. The rational use of noncovalent interactions to programme the molecular assemblies allow the construction of diverse molecular and material architectures with novel functional properties and applications. Understanding and controlling the assembly of molecular systems are daunting tasks owing to the complex factors that govern at the molecular level. Molecular architectures depend on the design of functional molecular modules through the judicious selection of functional core and auxiliary units to guide the precise molecular assembly and co-assembly patterns. Biomolecules with built-in information for molecular recognition are the ultimate examples of evolutionary guided molecular recognition systems that define the structure and functions of living organisms. Explicit use of biomolecules as auxiliary units to command the molecular assemblies of functional molecules is an intriguing exercise in the scheme of molecular architectonics. In this minireview, we discuss the implementation of the principles of molecular architectonics for the development of novel biomaterials with functional properties and applications ranging from sensing, drug delivery to neurogeneration and tissue engineering. We present the molecular designs pioneered by our group owing to the requirement and scope of the article while acknowledging the designs pursued by several research groups that befit the concept.     

Dynamic Covalent Self-sorting in Molecular and Polymeric Architectures Enabled by Spiroborate Bond Exchange

Self-sorting is commonly observed in complex reaction systems, which has been utilized to guide the formation of single major by-design molecules. However, most studies have been focused on non-covalent systems, and using self-sorting to achieve covalently bonded architectures is still relatively less explored. Herein, we first demonstrated the dynamic nature of spiroborate linkage and systematically studied the self-sorting behavior observed in the transformation between spiroborate-linked well-defined polymeric and molecular architectures, which is enabled by spiroborate bond exchange. The scrambling between a macrocycle and a 1D helical covalent polymer led to the formation of a molecular cage, whose structures are all unambiguously elucidated by single-crystal X-ray diffraction. The results indicate that the molecular cage is the thermodynamically favored product in this multi-component reaction system. This work represents the first example of a 1D polymeric architecture transforming into a shape-persistent molecular cage, driven by dynamic covalent self-sorting. This study will further guide the design of spiroborate-based materials and open the possibilities for the development of novel complex yet responsive dynamic covalent molecular or polymeric systems.     

Bioinspired molecular design of light-harvesting multiporphyrin arrays

Recent progress in fundamental studies on multiporphyrin arrays has provided structural parameters for the molecular design of artificial light-harvesting antennae which mimic the wheel-like antenna complexes of photosynthetic purple bacteria. Covalent and noncovalent approaches have been employed for the construction of artificial light-harvesting multiporphyrin arrays. Such arrays are categorized into ring-shaped, windmill-shaped, star-shaped, and dendritic architectures. In particular, dendritic multiporphyrin arrays have been proven to be promising candidates for both providing a large absorption cross-section and enabling the vectorial transfer of energy over a long distance to a designated point. Such molecular and supramolecular systems are also expected to be potent components for molecular electronics and photonic devices.     

Design of Bioinorganic Materials at the Interface of Coordination and Biosupramolecular Chemistry

Protein assemblies have recently become known as potential molecular scaffolds for applications in materials science and bio‐nanotechnology. Efforts to design protein assemblies for construction of protein‐based hybrid materials with metal ions, metal complexes, nanomaterials and proteins now represent a growing field with a common aim of providing novel functions and mimicking natural functions. However, the important roles of protein assemblies in coordination and biosupramolecular chemistry have not been systematically investigated and characterized. In this personal account, we focus on our recent progress in rational design of protein assemblies using bioinorganic chemistry for (1) exploration of unnatural reactions, (2) construction of functional protein architectures, and (3) in vivo applications.     

The chemistry of the polycyclic polyprenylated acylphloroglucinols

With their fascinating biological profiles and stunningly complex molecular architectures, the polycyclic polyprenylated acylphloroglucinols (PPAPs) have long provided a fertile playing field for synthetic organic chemists. In particular, the recent advent of innovative synthetic methods and strategies together with C-C bond-forming reactions and asymmetric catalysis have revitalized this field tremendously. Consequently, PPAP targets which once seemed beyond reach have now been synthesized. This Review aims to highlight the recent achievements in the total synthesis of PPAPs, as well as notable methods developed for the construction of the bicyclo[3.3.1] core of these chemically and biologically intriguing molecules.     

The stepwise supramolecular organisation of guanosine derivatives

Several supramolecular architectures generated by guanosine derivatives are described. The research started from the fortuitous observation of a lyotropic behavior exhibited by a guanylic nucleotide in water. This observation stimulated extensive research on several natural and lipophilic guanosine derivatives which self-assemble in different architectures (discs, ribbons, helices...), according to their structure and environment. These ordered structures can be used as scaffolds for photo- or electro-active moieties and for the fabrication of molecular electronic devices.     

Self‐Assembly of Functional Discrete Three‐Dimensional Architectures in Water

Construction of discrete, self‐assembled architectures in water has gained significant interest in recent years as a wide range of applications arises from their defined 3D structure. In this review we jointly discuss the efforts of supramolecular chemists and biotechnologists who previously worked independently, to tackle discipline‐specific challenges associated with construction of assemblies from synthetic and bio‐derived components, respectively. Going forward, a more interdisciplinary research approach will expedite development of complexes with real‐world applications that exploit the benefits of compartmentalisation. In support of this, we summarise advances made in the development of discrete, water‐soluble assemblies, with particular focus on their current and prospective applications. Areas where understanding and methodologies can be transferred from one sector to the adjacent field are highlighted in anticipation this will yield advances not possible from either field alone.     

Covalent Assembly and Characterization of Nonsymmetrical Single‐Molecule Nodes

The covalent linking of molecular building blocks on surfaces enables the construction of specific molecular nanostructures of well‐defined shape. Molecular nodes linked to various entities play a key role in such networks, but represent a particular challenge because they require a well‐defined arrangement of different building blocks. Herein, we describe the construction of a chemically and geometrically well defined covalent architecture made of one central node and three molecular wires arranged in a nonsymmetrical way and thus encoding different conjugation pathways. Very different architectures of either very limited or rather extended size were obtained depending on the building blocks used for the covalent linking process on the Au(111) surface. Electrical measurements were carried out by pulling individual molecular nodes with the tip of a scanning tunneling microscope. The results of this challenging procedure indicate subtle differences if the nodes are contacted at inequivalent termini.     

Development of photoresponsive supramolecular machines inspired by biological molecular systems

In the growing research area on molecular machinery, light is one of the attractive and useful stimuli source to operate synthetic molecular machines, since light allows selective operation of photoresponsive moieties without additives. We have proposed a new approach to design of photoresponsive molecular machines by interlocking mechanical motions between photoresponsive and movable units through covalent and non-covalent bonds. This approach is inspired by biological molecular machines consisting of multiple protein subunits, and potentially useful for construction of giant mechanical systems. In this review, we will introduce our concepts of the molecular design with several successful examples as well as their applications for controlling chemical events, and also glance at a semi-biological molecular machine controllable by light, which reveals a potential of biological systems for development of elaborate molecular devices.     

Tricyanometalate molecular chemistry: A type of versatile building blocks for the construction of cyano-bridged molecular architectures

Cyano-bridged molecule-based magnetic materials with reduced dimensionality, such as single-molecule magnets (SMMs) and single-chain magnets (SCMs), have attracted great research interest during the last decade. Among the cyano-based molecular precursors with ample coordinating capability, we note the ability of the tricyanometalate to link various metal ions lead to a wide diversity of structural architectures ranging from discrete polynuclear complexes to various one-dimensional (1D) assemblies. Some of them are promising cyano-bridged SMMs and SCMs. The use of capping tridentate organic ligands results in a number of clusters containing di-, tri-, tetra-, penta-, hexa-, octa-, fourteen-nuclear and various 1D metal-cyanide molecular architectures. Here we review the structural topologies of these complexes and their related magnetic properties, highlight typical examples, and point out the main possible directions that remain to be developed in this field. From the crystal engineering point of view, the compounds reviewed here should provide useful information for further design and investigation on this elusive class of cyano-bridged SMMs and SCMs.     

Pyrroloquinolines,a New Platform for Developing Organic Photosensitizers: When Synthetic Methodology Meets Photophysics†

New molecular architectures with triplet sensitization properties can have a big impact on photochemistry and photobiology. In their recent work, de Bonfils et al. have tackled this challenge in a very systematic way using a powerful synthetic strategy. This consists of an elegant yet practical organocatalyzed cyclization/oxidation rearrangement sequence which they now apply to the synthesis of pyrroloquinolines, a new scaffold for photosensitizers. However, beyond this new class of compounds, the strategy has potential to produce a myriad of compact organic chromophores with promising photoinduced intersystem crossing properties. The study therefore provides interesting clues to serve the rational design of biocompatible molecular photosensitizers but also raises puzzling questions on the intriguing excited state reactivity of these molecular architectures.