Photochemistry of pyrrole: time-dependent quantum wave-packet description of the dynamics at the 1pi sigma*-S0 conical intersections

The photoinduced hydrogen-elimination reaction in pyrrole via the conical intersections of the two (1)pi sigma(*) excited states with the electronic ground states [(1)B(1)(pi sigma(*))-S(0) and (1)A(2)(pi sigma(*))-S(0)] have been investigated by time-dependent quantum wave-packet calculations. Model potential-energy surfaces of reduced dimensionality have been constructed on the basis of accurate multireference ab initio electronic-structure calculations. For the (1)B(1)-S(0) conical intersection, the model includes the NH stretching coordinate as the tuning mode and the hydrogen out-of-plane bending coordinate as the coupling mode. For the (1)A(2)-S(0) conical intersection, the NH stretching coordinate and the screwing coordinate of the ring hydrogens are taken into account. The latter is the dominant coupling mode of this conical intersection. The electronic population-transfer processes at the conical intersections, the branching ratio between the dissociation channels, and their dependence on the initial preparation of the system have been investigated for pyrrole and deuterated pyrrole. It is shown that the excitation of the NH stretching mode strongly enhances the reaction rate, while the excitation of the coupling mode influences the branching ratio of different dissociation channels. The results suggest that laser control of the photodissociation of pyrrole via mode-specific vibrational excitation should be possible. The calculations provide insight into the microscopic details of ultrafast internal-conversion processes in pyrrole via hydrogen-detachment processes, which are aborted at the (1)pi sigma(*)-S(0) conical intersections. These mechanisms are of relevance for the photostability of the building blocks of life (e.g., the DNA bases).     

H atom elimination from the pi sigma* state in the photodissociation of phenol

Photodissociation of phenol at 248 nm was studied using multimass ion imaging techniques. Photofragment translational energy distribution of H atom elimination was measured. The results demonstrate that H atom elimination occurs on the pi sigma(*) excited state which has repulsive potential-energy functions with respect to the stretching of OH bond. It supports the recent ab initio calculation.     

Ultraviolet photolysis of adenine: dissociation via the 1pi sigma* state

High resolution total kinetic energy release (TKER) spectra of the H atom fragments resulting from photodissociation of jet-cooled adenine molecules at 17 wavelengths in the range 280>lambda(phot)>214 nm are reported. TKER spectra obtained at lambda(phot)>233 nm display broad, isotropic profiles that peak at low TKER ( approximately 1800 cm(-1)) and are largely insensitive to the choice of excitation wavelength. The bulk of these products is attributed to unintended multiphoton dissociation processes. TKER spectra recorded at lambda(phot)相似文献   

Time-dependent wave-packet dynamics with memory: the electron-HCl collision complex

Vibrational excitation by electron impact and dissociative electron attachment in HCl are described in a time-dependent picture. The calculations are based on the nonlocal resonance model of low-energy electron-HCl scattering proposed earlier by Domcke and Mündel. The space-time integrodifferential equation of motion for the time-dependent wave packet representing the electron-HCl collision complex has been solved using standard numerical techniques. The results provide insight into the nature of the pronounced threshold phenomena observed in the vibrational excitation and dissociative attachment cross sections of HCl.     

Photophysics of aromatic molecules with low-lying pi sigma* states: fluorinated benzenes

Unlike fluorinated benzenes with four or less fluorine atoms, pentafluorobenzene (PFB) and hexafluorobenzene (HFB) exhibit very small fluorescence yields and short fluorescence lifetimes. These emission anomalies suggest that the nature of the first excited singlet (S(1)) state may be different for the two classes of fluorobenzenes. Consistent with this conjecture, the time-dependent density-functional theory calculations yield S(1) state of pi pi(*) character for fluorinated benzenes with four or less F atoms, and S(1) state of pi sigma(*) character for PFB and HFB. The pi sigma(*) character of the S(1) state of PFB and HFB has been confirmed by laser-induced fluorescence, which reveal the presence of a new electronic transition to the red of the (1)pi pi(*) (L(b))<--S(0) transition, which can be identified with the predicted low-energy (1)pi sigma(*)<--S(0) absorption. The low fluorescence yields and the short fluorescence lifetimes of PFB and HFB are consistent with the small radiative decay rate of the (1)pi sigma(*) state and efficient S(1) (pi sigma(*))-->S(0) internal conversion between two electronic states of very different geometries.     

High resolution photofragment translational spectroscopy of the near UV photolysis of indole: dissociation via the 1pi sigma* state

The fragmentation dynamics of indole molecules following excitation at 193.3 nm, and at a number of different wavelengths in the range 240 < or = lambda(phot) < or = 286 nm, have been investigated by H Rydberg atom photofragment translational spectroscopy. The longer wavelength measurements have been complemented by measurements of excitation spectra for forming parent and fragment ions by two (or more) photon ionisation processes. Analysis identifies at least three distinct contributions to the observed H atom yield, two of which are attributable to dissociation of indole following radiationless transfer from the 1pi pi* excited states (traditionally labelled 1L(b) and 1L(a)) prepared by UV single photon absorption. The structured channel evident in total kinetic energy release (TKER) spectra recorded at lambda(phot) < or = 263 nm is rationalised in terms of N-H bond fission following initial pi* <-- pi excitation and subsequent coupling to the 1pi sigma* potential energy surface via a conical intersection between the respective surfaces--thereby validating recent theoretical predictions regarding the importance of this process (Sobolewski et al., Phys. Chem. Chem. Phys., 2002, 4, 1093). Analysis provides an upper limit for the N-H bond strength in indole: D0(H-indolyl) < or = 31,900 cm(-1). Unimolecular decay of highly vibrationally excited ground state molecules formed by internal conversion from the initially prepared 1pi pi* states is a source of (slow) H atoms but their contribution to the TKER spectra measured in the present work is dwarfed by that from H atoms generated by one or more (unintended but unavoidable) multiphoton processes.     

Separation of sigma and pi energies

This work presents an all-electron density functional theory implementation of the separation of sigma and pi energies. On the basis of the separation of the electronic density, rho, into sigma and pi parts, an ansatz for the separation of the exchange-correlation energy is proposed. The behavior of the sigma and pi energy parts in benzene is investigated under different distortions. The effect of local and nonlocal functionals on the separation of the exchange-correlation energy is studied, too.     

The role of pi sigma* state in intramolecular electron-transfer dynamics of 4-dimethylaminobenzonitrile and related molecules

Evidence is presented which indicates that the photoinduced intramolecular charge transfer (ICT) in 4-dimethylaminobenzonitrile proceeds by a new mechanism in which pi sigma(C triple bond N) (*) state is the intermediate of a consecutive process that takes the initially excited pi pi(*) state to the fully charge-separated ICT state. The absence of the ICT-state formation in 4-aminobenzonitrile is attributed to the smaller electron-donor strength of the amino group relative to the dimethylamino group, which hinders the pi sigma(*)-->ICT charge-shift reaction.     

Relevance of pi sigma* states in the photoinduced processes of adenine, adenine dimer, and adenine-water complexes

Ab initio calculations and time-resolved photoionization spectroscopy were carried out to characterize the role of the lowest two pi sigma* excited states for the photoinduced processes in the adenine monomer, adenine dimer, and adenine-water clusters. The calculations show--with respect to the monomer--a stabilization of 0.11-0.14 eV for the pi sigma* states in different isomers of adenine dimer and an even bigger stabilization of 0.14-0.36 eV for isomers of adenine-(H2O)1 and adenine-(H2O)3. Hence, the stabilized pi sigma* states should play an important role in the excited-state relaxation of partially or fully solvated adenine. This conclusion is supported by experimental results: In the adenine monomer, strong n pi* state signals are observed. Those signals are reduced in adenine dimer and vanish in water clusters due to the competing relaxation via the pi sigma* states.     

Understanding the participation of quadricyclane as nucleophile in polar [2sigma + 2sigma + 2pi] cycloadditions toward electrophilic pi molecules

The formal [2sigma + 2sigma + 2pi] cycloaddition of quadricyclane, 1, with dimethyl azodicarboxylate, 2, in water has been studied using DFT methods at the B3LYP/6-31G** and MPWB1K/6-31G** levels. In the gas phase, the reaction of 1 with 2 has a two-stage mechanism with a large polar character and an activation barrier of 23.2 kcal/mol. Inclusion of water through a combined discrete-continuum model changes the mechanism to a two-step model where the first nucleophilic attack of 1 to 2 is the rate-limiting step with an activation barrier of 14.7 kcal/mol. Analysis of the electronic structure of the transition state structures points out the large zwitterionic character of these species. A DFT analysis of the global electrophilicity and nucleophilicity of the reagents provides a sound explanation about the participation of 1 as a nucleophile in these cycloadditions. This behavior is reinforced by a further study of the reaction of 1 with 1,1-dicyanoethylene.     

The different photoisomerization efficiency of azobenzene in the lowest n pi* and pi pi* singlets: the role of a phantom state

Azobenzene E<==>Z photoisomerization, following excitation to the bright S(pi pi*) state, is investigated by means of ab initio CASSCF optimizations and perturbative CASPT2 corrections. Specifically, by elucidating the S(pi pi*) deactivation paths, we explain the mechanism responsible for azobenzene photoisomerization, the lower isomerization quantum yields observed for the S(pi pi*) excitation than for the S1(n pi*) excitation in the isolated molecule, and the recovery of the Kasha rule observed in sterically hindered azobenzenes. We find that a doubly excited state is a photoreaction intermediate that plays a very important role in the decay of the bright S(pi pi*). We show that this doubly excited state, which is immediately populated by molecules excited to S(pi pi*), drives the photoisomerization along the torsion path and also induces a fast internal conversion to the S1(n pi*) at a variety of geometries, thus shaping (all the most important features of) the S(pi pi*) decay pathway and photoreactivity. We reach this conclusion by determining the critical structures, the minimum energy paths originating on the bright S(pi pi*) state and on other relevant excited states including S1(n pi*), and by characterizing the conical intersection seams that are important in deciding the photochemical outcome. The model is consistent with the most recent time-resolved spectroscopic and photochemical data.     

Photophysics of aromatic molecules with low-lying pi sigma* states: excitation-energy dependence of fluorescence in jet-cooled aromatic nitriles

Excitation-energy dependence of fluorescence intensity and fluorescence lifetime has been measured for 4-dimethylaminobenzonitrile (DMABN), 4-aminobenzonitrile (ABN), 4-diisopropylaminobenzonitrile (DIABN), and 1-naphthonitrile (NN) in a supersonic free jet. In all cases, the fluorescence yield decreases rather dramatically, whereas the fluorescence lifetime decreases only moderately for S1 (pi pi*, L(b)) excess vibrational energy exceeding about 1000 cm(-1). This is confirmed by comparison of the normalized fluorescence excitation spectrum with the absorption spectrum of the compound in the vapor phase. The result indicates that the strong decrease in the relative fluorescence yield at higher energies is due mostly to a decrease in the radiative decay rate of the emitting state. Comparison of the experimental results with the TDDFT potential energy curves for excited states strongly suggests that the decrease in the radiative decay rate of the aminobenzonitriles at higher energies is due to the crossing of the pi pi* singlet state by the lower-lying pi sigma*(C[triple bond]N) singlet state of very small radiative decay rate. The threshold energy for the fluorescence "break-off" is in good agreement with the computed energy barrier for the pi pi*/pi sigma* crossing. For NN, on the other hand, the observed decrease is in fluorescence yield at higher excitation energies can best be attributed to the crossing of the pi pi* singlet state by the pi sigma* triplet state.     

Radiative lifetimes for the B1sigma(u)+ and C1pi states of the H2 molecule

With RKR electronic potentials for the B1sigma(u)+, C1pi(u) and X1sigma(u)+ states in conjunction with Huffaker's correction and appropriate asymptotic functions, the unperturbed radiative lifetimes of rovibrational levels of the B1sigma(u)+ and C1pi(u) states of H2 are calculated. Comparison with previous calculations is presented. Better lifetimes for B1sigma(u)+ are obtained in present work.     

Distinguishing the early and late transition states and exploring the validity of sigma --> sigma*#, sigma# --> sigma*, and sigma --> pi*(C=O) concepts in diastereoselection from NBO analysis

Natural bond orbital (NBO) analysis of several early TSs does not support the sigma --> sigma*# hypothesis. The sigma --> pi*(C=O) interaction controls the carbonyl pyramidalization that, in turn, controls the pi-selectivity of a nucleophilic addition. In contrast, late TSs are devoid of sigma --> pi*(C=O) interactions, and they benefit from sigma --> sigma*# interactions that control pi-selectivity. The evidence in favor of Anh-Felkin's sigma# --> sigma* hypothesis is weak. The electron-withdrawing sigma(C-F) in the 2-fluoropropanal-LiCN TS did not align anti to the incipient bond even though there was complete conformational freedom. The initial guess for the TS in which sigma(C-F) was held anti to sigma# optimized to what had lost the said geometrical relationship. Furthermore, in the TS for axial addition of LiCN to 2-ax-F-cyclohexanone, the net sigma --> sigma*# interaction was considerably larger than the net sigma# --> sigma* interaction. The relative TS energies require that the equatorial addition of LiCN to 2-ax-F-cyclohexanone be favored over the axial addition in good compliance with the available experimental results.     

Ultrafast decay of electronically excited singlet cytosine via a pi,pi* to n(O),pi* state switch

Singlet fluorescence lifetimes of adenosine, cytidine, guanosine, and thymidine, determined by femtosecond pump-probe spectroscopy (Pecourt, J.-M. L.; Peon, J.; Kohler, B. J. Am. Chem. Soc. 2000, 122, 9348. Pecourt, J.-M. L.; Peon, J.; Kohler, B. J. Am. Chem. Soc. 2001, 123, 10370), show that the excited states produced by 263 nm light in these nucleosides decay in the subpicosecond range (290-720 fs). Ultrafast radiationless decay to the ground state greatly reduces the probability of photochemical damage. In this work we present a theoretical study of isolated cytosine, the chromophore of cytidine. The experimental lifetime of 720 fs indicates that there must be an ultrafast decay channel for this species. We have documented the possible decay channels and approximate energetics, using a valence-bond derived analysis to rationalize the structural details of the paths. The mechanism favored by our calculations and the experimental data involves (1) a two-mode decay coordinate composed of initial bond length inversion followed by internal vibrational energy redistribution (IVR) to populate a carbon pyramidalization mode, (2) a state switch between the pi,pi* and nO,pi* (excitation from oxygen lone pair) excited states, and (3) decay to the ground state through a conical intersention. A second decay path through the nN,pi* state (excitation from the nitrogen lone pair), with a higher barrier, involves out-of-plane bending of the amino substituent.     

Fluorescence quantum yield and photochemistry of bacteriophytochrome constructs

Bacteriophytochromes (Bphs) are red-light photoreceptor proteins with a photosensory core that consists of three distinct domains, PAS, GAF and PHY, and covalently binds biliverdin (BV) to a conserved cysteine in the PAS domain. In a recent development, PAS-GAF variants were engineered for use as a near-infrared fluorescent marker in mammalian tissues (Tsien and co-workers, Science, 2009, 324, 804-807). Here, we report the fluorescence quantum yield and photochemistry of two highly-related Bphs from Rps. palustris, RpBphP2 (P2) and RpBphP3 (P3) with distinct photoconversion and fluorescence properties. We applied ultrafast spectroscopy to wild type P3 and P2 PAS-GAF proteins and their P3 D216A, Y272F and P2 D202A PAS-GAF-PHY mutant proteins. In these mutants hydrogen-bond interactions between a conserved aspartate (Asp) which connects the BV chromophore with the PHY domains are disrupted. The excited-state lifetime of the truncated P3 and P2 PAS-GAF proteins was significantly longer than in their PAS-GAF-PHY counterparts that constitute the full photosensory core. Mutation of the conserved Asp to Ala in the PAS-GAF-PHY protein had a similar but larger effect. The fluorescence quantum yields of the P3 D216A and Y272F mutants were 0.066, higher than that of wild type P3 (0.043) and similar to the engineered Bph of Tsien and co-workers. We conclude that elimination of a key hydrogen-bond interaction between Asp and a conserved Arg in the PHY domain is responsible for the excited-state lifetime increase in all Bph variants studied here. H/D exchange resulted in a 1.4-1.7 fold increase of excited-state lifetime. The results support a reaction model in which deactivation of the BV chromophore proceeds via excited-state proton transfer from the BV pyrrole nitrogens to the backbone of the conserved Asp or to a bound water. This work may aid in rational structure- and mechanism-based conversion of constructs based on P3 and other BPhs into efficient near-IR, deep tissue, fluorescent markers.     

An unusual pi* shape resonance in the near-threshold photoionization of S1 para-difluorobenzene

Previously reported dramatic changes in photoelectron angular distributions (PADs) as a function of photoelectron kinetic energy following the ionization of S1 p-difluorobenzene are shown to be explained by a shape resonance in the b(2g) symmetry continuum. The characteristics of this resonance are clearly demonstrated by a theoretical multiple-scattering treatment of the photoionization dynamics. New experimental data are presented which demonstrate an apparent insensitivity of the PADs to both vibrational motion and prepared molecular alignment, however, the calculations suggest that strong alignment effects may nevertheless be recognized in the detail of the comparison with experimental data. The apparent, but unexpected, indifference to vibrational excitation is rationalized by considering the nature of the resonance. The correlation of this shape resonance in the continuum with a virtual pi* antibonding orbital is considered. Because this orbital is characteristic of the benzene ring, the existence of similar resonances in related substituted benzenes is discussed.     

Time-dependent quantum Monte Carlo and the stochastic quantization

We examine the relation between the recently proposed time-dependent quantum Monte Carlo (TDQMC) method and the principles of stochastic quantization. In both TDQMC and stochastic quantization, particle motion obeys stochastic guidance equations to preserve quantum equilibrium. In this way the probability density of the Monte Carlo particles corresponds to the modulus square of the many-body wave function at all times. However, in TDQMC, the motion of particles and guide waves occurs in physical space unlike in stochastic quantization where it occurs in configuration space. Hence, the practical calculation of time evolution of many-body fully correlated quantum systems becomes feasible within the TDQMC methodology. We illustrate the TDQMC technique by calculating the symmetric and antisymmetric ground state of a model one-dimensional helium atom, and the time evolution of the dipole moment when the atom is irradiated by a strong ultrashort laser pulse.