Stabilization of a helical water chain in a metal-organic host of a trinuclear Schiff base complex

Three heterometallic trinuclear Schiff base complexes, [{CuL1(H2O)}2Ni(CN)4].4H2O (1), [{CuL2(H2O)}2Ni(CN)4] (2), and [{CuL3(H2O)}2Ni(CN)4] (3) (HL1=7-amino-4-methyl-5-azahept-3-en-2-one, HL2=7-methylamino-4-methyl-5-azahept-3-en-2-one, and HL3=7-dimethylamino-4-methyl-5-azahept-3-en-2-one), were synthesized. All three complexes were characterized by elemental analysis, IR and UV spectroscopies, and thermal analysis. Two of them (1 and 3) were also characterized by single crystal X-ray crystallography. Complex 1 forms a hydrogen-bonded one-dimensional metal-organic framework that stabilizes a helical water chain into its cavity, but when any of the amine hydrogen atoms of the Schiff base are replaced by methyl groups, as in L2 and L3, the water chain vanishes, showing explicitly the importance of the host-guest H-bonding interactions for the stabilization of a water cluster.     

Observation of entropic effect on conformation changes of complex systems under well-controlled temperature conditions

We report direct observation of an entropic effect in determining the folding of a linear dicarboxylate dianion with a flexible aliphatic chain [(-)O(2)C-(CH(2))(6)-CO(2)(-)] by photoelectron spectroscopy as a function of temperature (18-300 K) and degree of solvation from 1 to 18 water molecules. A folding transition is observed to occur at 16 solvent water molecules at room temperature and at 14 solvent molecules below 120 K due to the entropic effect. The (-)O(2)C-(CH(2))(6)-CO(2)(-)(H(2)O)(14) hydrated cluster exhibits interesting temperature-dependent behaviors, and its ratio of folded over linear conformations can be precisely controlled as a function of temperature, yielding the enthalpy and entropy differences between the two conformations. A folding barrier is observed at very low temperatures, resulting in kinetic trapping of the linear conformation. The current work provides a simple model system to study the dynamics and entropic effect in complex systems and may be important for understanding the hydration and conformation changes of biological molecules.     

Characterization of hydrated Na+(phenol) and K+(phenol) complexes using infrared spectroscopy

Hydrated alkali metal ion-phenol complexes were studied to model these species in aqueous solution for M=Na and K. IR predissociation spectroscopy in the O-H stretch region was used to analyze the structures of M+(Phenol)(H2O)n cluster ions, for n = 1-4. The onset of hydrogen bonding was observed to occur at n=4. Ab initio calculations were used to qualitatively explore the types of hydrogen-bonded structures of the M+(Phenol)(H2O)4 isomers. By combining the ab initio calculations and IR spectra, several different structures were identified for each metal ion. In contrast to benzene, detailed in a previous study of Na+(Benzene)n(H2O)m [J. Chem. Phys. 110, 8429 (1999)], phenol is able to bind directly to Na+ even in the presence of four waters. This is likely the result of the sigma-type interaction between the phenol oxygen and the ion. With K+, the dominant isomers are those in which the phenol O-H group is involved in a hydrogen bond with the water molecules, while with Na+, the dominant isomers are those in which the phenol O-H group is free and the water molecules are hydrogen-bonded to each other. Spectra and ab initio calculations for the M+(Phenol)Ar cluster ions for M=Na and K are reported to characterize the free phenol O-H stretch in the M+(Phenol) complex. While pi-type configurations were observed for binary M+(Phenol) complexes, sigma-type configurations appear to dominate the hydrated cluster ions.     

Microhydration of NO3(-): a theoretical study on structure, stability and IR spectra

A systematic study on the structure and stability of nitrate anion hydrated clusters, NO3(-) x n H2O (n = 1-8) are carried out by applying first principle electronic structure methods. Several possible initial structures are considered for each size cluster to locate equilibrium geometry by applying a correlated hybrid density functional with 6-311++G(d,p) basis function. Three different types of arrangements, namely, symmetrical double hydrogen bonding, single hydrogen bonding and inter-water hydrogen bonding are obtained in these hydrated clusters. A structure having inter-water hydrogen bonding is more stable compared to other arrangements. Surface structures are predicted to be more stable over interior structures. Up to five solvent H2O molecules can stay around solute NO3(-) anion in structures having an inter-water hydrogen-bonded cyclic network. A linear correlation is obtained for weighted average solvent stabilization energy with the size (n) of the hydrated cluster. Distinctly different shifts of IR bands are observed in these hydrated clusters for different kinds of bonding environments of O-H and N=O stretching modes compared to isolated H2O and NO3(-) anion. Weighted average IR spectra are calculated on the basis of statistical population of individual configurations of each size cluster at 150 K.     

Raman spectroscopic study of the molecular structure of the uranyl mineral zippeite from Jáchymov (Joachimsthal), Czech Republic

Raman spectra at 298 and 77K and infrared spectra of the uranyl sulfate mineral zippeite from Jáchymov (Joachimsthal), Czech Republic, K(0.6)(H(3)O)0.4[(UO(2))6(SO(4))3(OH)7].8H2O, were studied. Observed bands were tentatively attributed to the (UO(2))2+ and (SO(4))2- stretching and bending vibrations, the OH stretching vibrations of water molecules, hydroxyls and oxonium ions, and H(2)O, oxonium, and delta U-OH bending vibrations. Empirical relations were used for the calculation of U-O bond lengths in uranyl R (A)=f(nu(3) or nu(1)(UO(2))2+). Calculated U-O bond lengths are in agreement with U-O bond lengths from the single crystal structure analysis and those inferred for uranyl anion sheet topology of uranyl pentagonal dipyramidal coordination polyhedra. The number of observed bands supports the conclusion from single crystal structure analysis that at least two symmetrically distinct U6+ (in uranyls) and S6+ (in sulfates), water molecules and hydroxyls may be present in the crystal structure of the zippeite studied. Strong to very weak hydrogen bonds present in the crystal structure of zippeite studied were inferred from the IR spectra.     

Quantum simulation of a hydrated noradrenaline analog with the torsional path integral method

An extended version of the torsional path integral Monte Carlo (TPIMC) method is presented and shown to be useful for studying the conformation of flexible molecules in solvated clusters. The new technique is applied to the hydrated clusters of the 2-amino-1-phenyl-ethanol (APE) molecule. APE + nH2O clusters with n = 0-4 are studied at 100 and 300 K using both classical and quantum simulations. Only at the lower temperature is the hydration number n found to impact the conformational distribution of the APE molecule. This is shown to be a result of the temperature-dependent balance between the internal energy and entropy contributions to the relative conformer free energies. Furthermore, at 100 K, large quantum effects are observed in the calculated conformer populations. A particularly large quantum shift of 30% of the total population is calculated for the APE + 2H2O cluster, which is explained in terms of the relative zero point energy of the lowest-energy hydrated structures for this cluster. Finally, qualitative agreement is found between the reported calculations and recent spectroscopy experiments on the hydrated clusters of APE, including an entropically driven preference for the formation of AG-type hydrated structures and the formation of a water "droplet" in the APE + 4H2O cluster.     

Exploration on regulating factors for proton transfer along hydrogen-bonded water chains.

Proton transfer along a single-file hydrogen-bonded water chain is elucidated with a special emphasis on the investigation of chain length, side water, and solvent effects, as well as the temperature and pressure dependences. The number of water molecules in the chain varies from one to nine. The proton can be transported to the acceptor fragment through the single-file hydrogen-bonded water wire which contains at most five water molecules. If the number of water molecule is more than five, the proton is trapped by the chain in the hydroxyl-centered H(7)O(3) (+) state. The farthest water molecule involved in the formation of H(7)O(3) (+) is the fifth one away from the donor fragment. These phenomena reappear in the molecular dynamics simulations. The energy of the system is reduced along with the proton conduction. The proton transfer mechanism can be altered by excess proton. The augmentation of the solvent dielectric constant weakens the stability of the system, but favors the proton transfer. NMR spin-spin coupling constants can be used as a criterion in judging whether the proton is transferred or not. The enhancement of temperature increases the thermal motion of the molecule, augments the internal energy of the system, and favors the proton transfer. The lengthening of the water wire increases the entropy of the system, concomitantly, the temperature dependence of the Gibbs free energy increases. The most favorable condition for the proton transfer along the H-bonded water wire is the four-water contained chain with side water attached near to the acceptor fragment in polar solvent under higher temperature.     

Spectroscopic and semiempirical studies of a proton channel formed by the methyl ester of monensin A

Monensin A is an ionophore able to carry protons and cations through the cell membrane. Its methyl ester (MON1) and its hydrates have been studied in acetonitrile, and its deuterated analogue by Fourier transform infrared (FTIR) and (1)H and (13)C NMR spectroscopies as well as by vapor pressure osmotic and PM5 semiempirical methods. Interestingly, these hydrates show new and unexpected biophysical and biochemical properties. The formation of the hydrates starts with a transfer of a proton from the O(IV)-H hydroxyl group of MON1 to an oxygen atom of a water molecule, which is subsequently hydrated by other water molecules forming the (MON1 + 3H(2)O) species. This hydrate exhibits a ringlike structure in which the water molecules form an almost linear hydrogen-bonded chain. Within this chain, the excess proton fluctuates very fast inside the water cluster as indicated by a continuous absorption in the FTIR spectra. The formation of the (MON1 + 3H(2)O) species is accompanied by a self-assembly process, leading to the formation of a proton channel made up of eight (MON1 + 3H(2)O) units with a length of 60 A, in which the proton can fluctuate over the whole distance. Semiempirical calculations suggest that due to the hydrophobic surface the channel can be incorporated readily in a lipid bilayer. This hypothetical new channel is thought to be able to transport protons through the cell membrane. Thus it is a suitable model for studying proton-transfer processes, and in addition, it may open interesting new fields of application.     

Microhydration shell structure in Cl2*-.nH2O clusters: A theoretical study

We present the results of a detailed study on structure and electronic properties of hydrated cluster Cl2*-.nH2O (n = 1-7) based on a nonlocal density functional, namely, Becke's [J. Chem. Phys. 98, 1372 (1993)] half and half hybrid exchange-correlation functional with a split valence 6-311++G(d,p) basis function. Geometry optimizations for all the clusters are carried out with various possible initial guess structures without any symmetry restriction. Several minimum energy structures (conformers) are predicted with a small difference in total energy. There is a competition between the binding of solvent H2O units with Cl2*- dimer radical anion directly through ion-molecule interaction and forming interwater hydrogen-bonding network in Cl2*-.nH2O (n > or = 2) hydrated cluster. Structure having interwater H-bonded network is more stable over the structure where H2O units are connected to the solute dimer radical anion Cl2*- rather independently either by single or double H bonding in a particular size (n) of hydrated cluster Cl2*-.nH2O. At the maximum four solvent H2O units reside in interwater H-bonding network present in these hydrated clusters. It is observed that up to six H2O units are independently linked to the anion having four double H bondings and two single H bondings suggesting the primary hydration number of Cl2*- to be 6. In all these clusters, the odd electron is found to be mostly localized over the two Cl atoms and these two atoms are bound by a three-electron hemibond. Calculated interaction (between solute and different water clusters) and vertical detachment energy profiles show saturation at n = 6 in the hydrated cluster Cl2*-.nH2O (n = 1-7). However, calculated solvation energy increases with the increase in number of solvent H2O molecules in the cluster. Interaction energy varies linearly with vertical detachment energy for the hydrated clusters Cl2*-.nH2O (n < or = 6). Calculation of the vibration frequencies show that the formation of Cl2*(-)-water clusters induces significant shifts from the normal stretching modes of isolated water. A clear difference in the pattern of IR spectra is observed in the O-H stretching region of water from hexa- to heptahydrated cluster.     

Quantum proton transfer in hydrated sulfuric acid clusters: a perspective from semiempirical path integral simulations

We have carried out path-integral molecular dynamics simulations for hydrated sulfuric acid clusters to understand acid-dissociation and hydrogen-bonded structural rearrangement processes in these clusters from a quantum mechanical viewpoint. The simulations were performed using the PM6 semiempirical electronic structure level whose parameters were modified on the basis of the specific reaction parameters strategy so that relative energies of optimized structures, as well as water binding energies reproduce ab initio and density-functional theory calculations. We have found that the acid dissociation processes, first and second deprotonation, effectively occur in a hydrated cluster with a specific cluster size. The mechanisms of the proton-transfer processes were analyzed in detail and it was found that the distance between O in sulfuric acid and O in the proton-accepting water is playing an important role. We also found that the water coordination number of the poton-accepting water is important in the proton-transfer processes.     

Water superstructures within organic arrays; hydrogen-bonded water sheets, chains and clusters

A strategy for encouraging the formation of extended water arrays is presented, in which molecules that contain a 1,4-dihydroquinoxaline-2,3-dione core are used as supramolecular hosts for the accommodation of guest water molecules and arrays. These molecules were selected as they contain a hydrophilic oxalamide-based "terminus" that allows water molecules to hydrogen-bond to the host organic molecules as well as to each other. The host molecules also contain a hydrophobic "end" based upon an aromatic ring, which serves to encourage the formation of discrete water clusters in preference to three-dimensional networks, as the water molecules cannot form strong hydrogen bonds with this part of the molecule. A systematic study of several hydrated structures of four organic molecules based on 1,4-dihydroquinoxaline-2,3-dione (qd) is discussed. The organic molecules, qd, 6-methyl-1,4-dihydroquinoxaline-2,3-dione (mqd), 6,7-dimethyl-1,4-dihydroquinoxaline-2,3-dione (dmqd) and 1,4-dihydrobenzo[g]quinoxaline-2,3-dione (Phqd), act as supramolecular crystal hosts for the clusters of water, with zero-, one- and two-dimensional arrays of water being observed. The hydrogen bonding in the structures, both within the water clusters and between the clusters and organic molecules, is examined. In particular, the structure of dmqd6 H2O contains a two-dimensional water sheet composed of pentagonal and octagonal units. Phqd3 H2O forms a hydrophilic extended structure encouraging the formation of one-dimensional chains consisting entirely of water. Both qd2 H2O and dmqd2 H2O can be considered to form one-dimensional chains, but only by utilising bridging carbonyl groups of the oxalamide moieties to form the extended array; if only the water is considered, zero-dimensional water tetramers are observed. The remaining hydrated structures, [Na+dmqd-]dmqdH2O, dmqd1/3H2O and mqd1/2H2O, all contain discrete water molecules but do not form extended water structures.     

One and Two-dimensional Structures of a New Oxamido Copper(Ⅱ) Complex with Phthalato Bridged

A new o-phthalato-bridged oxamide copper(Ⅱ) complex 1, {[Cu2(oxap)](pht)4H2O}n (oxap = N, N'-bis(2-aminopropyl)oxamide, pht = phthalate dianion), has been prepared and structurally characterized. It crystallizes in monoclinic, space group C2/c with a = 23.424(4), b = 7.9696(14), c = 15.727(3) (A), β = 129.617(2)°, C16H28Cu2N4O10, Mr = 563.50, V = 2261.6(7) (A)3, Z = 4, Dc = 1.655 g/cm3,μ(MoKα) = 1.939 mm 1, F(000) = 1160, the final R = 0.0393 and wR = 0.0928 for 1707 observed reflections with I ＞ 2σ(Ⅰ). Single-crystal X-ray analysis reveals that 1 displays a one-dimensional zigzag chain structure, in which each Cu(oxap) moiety adopting trans-conformation is connected by μ1,6-phthalate anion bridges, and these zigzag chains are further linked by anotherμ1,6-phthalate anion bridge to form a 2D sheet structure. The polar guest water molecules reside in the inter- and intrasheets to stabilize the whole crystal structure.     

黄连素-染料木素有机盐水合物的制备、晶体结构及溶解性

合成了黄连素和染料木素的有机盐水合物[C₂₀H₁₈NO₄]⁺·[C₁₅H₉O₅]^-·2.5H₂O·0.5(C₂H₅OH),并测定了其晶体结构。 解析结果表明,该有机盐水合物属于单斜晶系,P2₁/c空间群。 染料木素7取代位的羟基失去了质子变成了染料木素阴离子。 羟基阴离子与4'取代位上的羟基形成了O—H••••O^-氢键,产生了一维的氢键链状结构。 两个水分子通过氢键作用形成了链状结构,并与染料木素阴离子形成二维的氢键结构。 加热失去水分子后,有机盐水合物变成无定型状态。 在乙醇水溶液中悬浮后,无定型可以转变成结晶的水合物结构。 形成黄连素-染料木素有机盐水合物后,染料木素在水中的溶解度略有增加。     

One and Two-dimensional Structures of a New Oxamido Copper(II) Complex with Phthalato Bridged

1 INTRODUCTION Coordination polymers are a family of materials composed of 1D chains, 2D sheets, and 3D networks of metal-organic building blocks connected via co- valent and hydrogen bonds. Recently, they have re- ceived increasing attention for their fascinating struc- tures and topological features[1～4]. The complex as ligands approach is one of the best strategies to de- sign and synthesize polynuclear species, and a good example of ‘complex ligand’ is represented by mono- nuclear…     

Photochemical control of dielectric properties based on intermolecular proton transfer in a hydrogen-bonded diarylethene crystal

The photochromic reaction of a diarylethene derivative having imidazoline rings reversibly modulates the dielectric properties of the crystal, which is based on the intermolecular proton transfer in one-dimensional (1D) hydrogen-bonded chains.     

Structure of hydrated clusters of dibenzo-18-crown-6-ether in a supersonic jet--encapsulation of water molecules in the crown cavity

The structure of dibenzo-18-crown-6-ether (DB18C6) and its hydrated clusters has been investigated in a supersonic jet. Two conformers of bare DB18C6 and six hydrated clusters (DB18C6-(H(2)O)(n)) were identified by laser-induced fluorescence, fluorescence-detected UV-UV hole-burning and IR-UV double-resonance spectroscopy. The IR-UV double resonance spectra were compared with the IR spectra obtained by quantum chemical calculations at the B3LYP/6-31+G* level. The two conformers of bare DB18C6 are assigned to "boat" and "chair I" forms, respectively, among which the boat form is dominant. All the six DB18C6-(H(2)O)(n) clusters with n = 1-4 have a boat conformation in the DB18C6 part. The water molecules form a variety of hydration networks in the boat-DB18C6 cavity. In DB18C6-(H(2)O)(1), a water molecule forms the bidentate hydrogen bond with the O atoms adjacent to the benzene rings. In this cluster, the water molecule is preferentially hydrogen bonded from the bottom of boat-DB18C6. In the larger clusters, the hydration networks are developed on the basis of the DB18C6-(H(2)O)(1) cluster.     

Hydrogen bonding in 3-azetidinol—3. Ab initio and experimental spectra of the hydrogen-bonded species

The IR and Raman spectra in the range 4000-10 cm⁻ of 3-azetidinol and the O,N-dideuterated derivative have been recorded in the solid state and in aqueous solution. The interpretation of the vibrational spectra has been based upon ab initio calculations in the STO-3G approximation. A model structure for the calculations has been adopted in which 3-azetidinol binds two molecules of water and two molecules of ammonia. The results obtained for the aqueous solution are in accordance with the occurrence of 3-azetidinol as a hydrated, stacked, intermolecularly hydrogen-bonded chain.     

Evidence for a tilted smectic phase in Anopore membranes by dielectric spectroscopy

Collective relaxation processes are completely undetectable in a ferroelectric liquid crystal confined in porous Anopore membranes, as a result of perfect orientation of the smectic layers perpendicular both to the long axis of the pores and the direction of the measuring electric field. In the ferroelectric liquid crystal – Anopore composite only one relaxation process, assigned to rotation of the molecule around the molecular short axis, appears throughout all smectic phases. The temperature dependence of the relaxation frequency and of the dielectric strength of this process also shows no irregularity at the point of polarization sign reversal. The temperature dependence of the relaxation frequency follows the Arrhenius law with an activation energy slightly higher in the ferroelectric SmC* phase. Analysis of the non‐linear changes of temperature dependence of the dielectric strength at the SmA–SmC* phase transition enables one to obtain the temperature dependence of the tilt angle of the molecules in the SmC* phase in the Anopore membrane. Dielectric measurements confirm the existence of the tilted smectic phase in Anopore cylindrical channels with no tilt anomaly at the point of polarization sign reversal.     

Evidence for a tilted smectic phase in Anopore membranes by dielectric spectroscopy

Collective relaxation processes are completely undetectable in a ferroelectric liquid crystal confined in porous Anopore membranes, as a result of perfect orientation of the smectic layers perpendicular both to the long axis of the pores and the direction of the measuring electric field. In the ferroelectric liquid crystal - Anopore composite only one relaxation process, assigned to rotation of the molecule around the molecular short axis, appears throughout all smectic phases. The temperature dependence of the relaxation frequency and of the dielectric strength of this process also shows no irregularity at the point of polarization sign reversal. The temperature dependence of the relaxation frequency follows the Arrhenius law with an activation energy slightly higher in the ferroelectric SmC* phase. Analysis of the non-linear changes of temperature dependence of the dielectric strength at the SmA-SmC* phase transition enables one to obtain the temperature dependence of the tilt angle of the molecules in the SmC* phase in the Anopore membrane. Dielectric measurements confirm the existence of the tilted smectic phase in Anopore cylindrical channels with no tilt anomaly at the point of polarization sign reversal.     

一维梯子型链状有机双膦酸铜Cu_3{(C_5NH_(11))C(OH)(PO_3)_2}_2(H_2O)_4·4H_2O的合成和表征(英文)

本文报道了一个新的有机双膦酸铜化合物Cu3{(C5NH11)C(OH)(PO3)2}2(H2O)4·4H2O(1)的合成及结构。该化合物呈梯子型双链结构,由Cu(1)O5四方锥体和Cu(2)O6八面体通过{PO3C}四面体以共顶点方式连接而成。相邻的双链以几乎相互垂直的方式堆积,通过氢键作用形成了具有孔道的三维超分子网络结构,晶格水分子填充其中。磁性研究表明在铜离子间存在反铁磁相互作用。