Time-dependent density functional theory based Ehrenfest dynamics

Time-dependent density functional theory based Ehrenfest dynamics with atom-centered basis functions is developed in present work. The equation of motion for electrons is formulated in terms of first-order reduced density matrix and an additional term arises due to the time-dependence of basis functions through their dependence on nuclear coordinates. This time-dependence of basis functions together with the imaginary part of density matrix leads to an additional term for nuclear force. The effects of the two additional terms are examined by studying the dynamics of H(2) and C(2)H(4), and it is concluded that the inclusion of these two terms is essential for correct electronic and nuclear dynamics.     

Predicting exchange coupling constants in frustrated molecular magnets using density functional theory

We study the Heisenberg exchange couplings in polynuclear transition-metal clusters with strong spin frustration using a variety of theoretical techniques. We present results for a trinuclear Cr(III) molecule, a tetranuclear Fe(III) complex, and an octanuclear Fe(III) molecular magnet. We explore the physics of the exchange couplings in these systems using standard broken-symmetry (BS) techniques and a more recently developed constrained density functional theory (C-DFT) approach. The calculations show that the expected picture of localized spin moments on the metal centers is appropriate, and in each case C-DFT predicts coupling constant values in good agreement with experiment. Furthermore, we demonstrate that all of the C-DFT spin states for a given cluster can be reasonably described by a single Heisenberg Hamiltonian. These findings are significant in part because standard BS calculations are in conflict with the experiments on a number of key points. For example, BS-DFT predicts a doublet (rather than quartet) ground state for the Cr(III) cluster while for the Fe(III) complexes BS-DFT predicts some of the exchange couplings to be ferromagnetic whereas the experimentally derived couplings are all antiferromagnetic. Furthermore, for BS-DFT the best-fit exchange parameters can depend significantly on the set of spin configurations chosen. For example, by choosing configurations with Ms closer to Ms(max) the BS-DFT couplings can typically be made somewhat closer to the C-DFT and experimental results. Thus, in these cases, our results consistently support the experimental findings.     

Fitting properties from density functional theory based molecular dynamics simulations to parameterize a rigid water force field

In the quest towards coarse-grained potentials and new water models, we present an extension of the force matching technique to parameterize an all-atom force field for rigid water. The methodology presented here allows to improve the matching procedure by first optimizing the weighting exponents present in the objective function. A new gauge for unambiguously evaluating the quality of the fit has been introduced; it is based on the root mean square difference of the distributions of target properties between reference data and fitted potentials. Four rigid water models have been parameterized; the matching procedure has been used to assess the role of the ghost atom in TIP4P-like models and of electrostatic damping. In the former case, burying the negative charge inside the molecule allows to fit better the torques. In the latter, since short-range interactions are damped, a better fit of the forces is obtained. Overall, the best performing model is the one with a ghost atom and with electrostatic damping. The approach shown in this paper is of general validity and could be applied to any matching algorithm and to any level of coarse graining, also for non-rigid molecules.     

Calculation of Verdet constants with time-dependent density functional theory: implementation and results for small molecules

We report the implementation of a method by which to calculate Verdet constants for molecules. The method is based on gauge-including atomic orbitals (GIAOs) and density functional theory. Calculations based on this method afford magneto-optical rotations of the right magnitude for the molecules H2, N2, CO, HF, CH4, C2H2, H2O, and CS2. The results are in satisfactory agreement with experiment. We investigate the dependency of the results on the gauge origin if GIAOs are not chosen, the convergence of the results with the size of the basis set for AOs and GIAOs, and for H2O and CS2 a comparison of gas-phase and liquid phase values. For the small molecules studied here, large polarized basis sets with diffuse functions are required to obtain well converged results. The use of an asymptotically correct Kohn-Sham potential is advantageous.     

Adsorption energy distribution from the Aranovich-Donohue lattice density functional theory

We propose a new methodology projected for the estimation of the adsorption energy distribution from the monolayer part of a single nitrogen adsorption isotherm determined at 77 K based on the lattice density functional theory (DFT) via the Aranovich-Donohue formalism. At first sight, the presented approach is computationally more difficult than a classical one. However, it is more flexible and comprehensible. Next, we developed a numerical program and used it for the estimation of the adsorption energy distribution from the experimental data on carbon black samples. The main nitrogen molecule-carbon black surface interaction energy can be estimated as approximately 7-8 kJ/mol, but the heterogeneity of the investigated materials differs significantly. Furthermore, we compare the results obtained from the lattice DFT via the Aranovich-Donohue formalism with the solution of the integral equation with the kernel represented by the classical monolayer localized Fowler-Guggenheim isotherm equation. The similarity between these two independent approaches is observed. The proposed methodology can be used for the investigation of the energetic heterogeneity of not only the carbonaceous materials but also the other "flat-surfaced" solids.     

Scaling dynamical correlation energy from density functional theory correlation functionals

The scaling of dynamical correlation energy in molecules obtained by the correlation functionals of density functional theory (DFT) is examined. The approach taken is very similar to the scaled external correlation method of Brown and Truhlar but is based on the observation that DFT correlation functionals, especially the LYP, appear to represent the dynamical portion of the correlation energy in molecules. We examine whether higher accuracy in atomization energies can be gained by scaling without significant deterioration of the structural and spectroscopic properties of the molecules using four DFT functionals (BLYP, OLYP, B3LYP, and O3LYP) on 19 molecules including the six molecule AE6 database, the latter being representative of a much larger, 109 molecule training set. We show that, with molecule specific scale factors, nearly perfect agreement with experiment can be achieved in atomization energies without increasing the average errors in other molecular properties relative to the DFT calculation. We further show that it is possible to find optimal scale factors which reduce the mean unsigned error per bond to levels comparable to those of some multilevel multicoefficient methods.     

Electronic properties of liquid water by sequential molecular dynamics/density functional theory

Electronic properties of liquid water were analysed by a sequential molecular dynamics (MD)/density functional theory approach. MD simulations are based on a polarisable model for water. Emphasis was placed on the prediction of the water dipole moment, liquid state polarisability, ionisation potential (IP), and vertical electron affinity. The dipole moment of the water molecule in liquid water is not dependent on the number of molecules included in the quantum mechanical calculations. The polarisability of the water molecule in liquid water is 4% lower than its gas phase value. The IP of liquid water (9.7 ± 0.06 eV) is in good agreement with recent experimental data.     

Time-dependent density functional theory based upon the fragment molecular orbital method

Time-dependent density functional theory (TDDFT) was combined with the two-body fragment molecular orbital method (FMO2). In this FMO2-TDDFT scheme, the system is divided into fragments, and the electron density for fragments is determined self-consistently. Consequently, only one main fragment of interest and several fragment pairs including it are calculated by TDDFT. To demonstrate the accuracy of FMO2-TDDFT, we computed several low-lying singlet and triplet excited states of solvated phenol and polyalanine using our method and the standard TDDFT for the full system. The BLYP functional with the long-range correction (LC-BLYP) was employed with the 6-31G(*) basis set (some tests were also performed with 6-311G(*), as well as with B3LYP and time-dependent Hartree-Fock). Typically, FMO2-TDDFT reproduced the full TDDFT excitation energies within 0.1 eV, and for one excited state the error was about 0.2 eV. Beside the accurate reproduction of the TDDFT excitation energies, we also automatically get an excitation energy decomposition analysis, which provides the contributions of individual fragments. Finally, the efficiency of our approach was exemplified on the LC-BLYP6-31G(*) calculation of the lowest singlet excitation of the photoactive yellow protein which consists of 1931 atoms, and the obtained value of 3.1 eV is in agreement with the experimental value of 2.8 eV.     

High magnetic exchange coupling constants: a density functional theory based study of substituted schlenk diradicals

The Schlenk diradical has been known since 1915. After a detailed experimental work by Rajca, its magnetic nature has remained more or less unexplored. We have investigated by quantum chemical calculations the nature of magnetic coupling in 11 substituted Schlenk diradicals. Substitution has been considered at the fifth carbon atom of the meta-phenylene moiety. The UB3LYP method has been used to study 12 diradicals including the original one. The 6-311G(d,p) basis set has been employed for optimization of molecular geometry in both singlet and triplet states for each species. The singlet optimization has led to the optimization of the broken-symmetry structure for 10 species including the unsubstituted one. This development makes it possible to carry out further broken symmetry calculations in two ways. The triplet calculation has been done using 6-311++G(d,p) basis set and the optimized triplet geometry in both procedures. The broken symmetry calculations have used the optimized geometries of either the triplet states or the broken symmetry solutions. The first method leads to the prediction of electron paramagnetic resonance (EPR) compatible magnetic exchange coupling constant (J) in the range 517-617 cm(-1). A direct optimization of the broken symmetry geometry gives rise to a lower estimate of J, in the range of 411-525 cm(-1) and compatible with macroscopic Curie studies. The calculated J for the unsubstituted Schlenk diradical is 512 cm(-1) that can be compared with 455 cm(-1) estimated by Rajca. In both cases, introduction of groups with +M and +I effects (Ingold's notation) decreases the J value from that for the unsubstituted Schlenk diradical while -I and -M groups at the same position increases J. These trends have been explained in terms of Hammett constants, atomic spin densities, and dihedral angles.     

Lattice density functional theory of molecular diffusion

A density functional theory of diffusion is developed for lattice fluids with molecular flux as a functional of the density distribution. The formalism coincides exactly with the generalized Ono-Kondo density functional theory when there is no gradient of chemical potential, i.e., at equilibrium. Away from equilibrium, it gives Fick's first law in the absence of a potential energy gradient, and it departs from Fickian behavior consistently with the Maxwell-Stefan formulation. The theory is applied to model a nanopore, predicting nonequilibrium phase transitions and the role of surface diffusion in the transport of capillary condensate.     

Solvent effect on stabilization energy: An approach based on density functional reactivity theory

In the present article a formalism and the corresponding computational method is developed to take care of the variation of stabilization energy with solvent polarity in the process of adduct formation. For this purpose, a simple but physically insightful definition of “net desolvation energy” is proposed keeping in mind the sequence of events taking place in the process of adduct formation in a solvent. The approach used here is based on density functional reactivity theory (DFRT) and the representative samples chosen are adduct formation between (a) methyltrioxorhenium (MTO) and pyridine and (b) (azidomethyl)benzene and methylpropiolate. The generated data in case (a) is correlated with already known experimental parameter that is, formation constant (K_f). The observed trends claim that with the increase in solvent polarity interaction (or stabilization) energy becomes less negative which means that on increasing the solvent polarity the chances of adduct formation are less. This is further supported by calculating hardness values of adducts in different solvents which goes on decreasing with the increase in solvent polarity. Here, the computed data show that on increasing the polarity (i.e., dielectric constant) of the solvent, the “net desolvation energy” increases. Finally, when “net desolvation energy” is added to the stabilization energy obtained from DFRT the predicted trends are achieved.     

Spherical polymer brushes under good solvent conditions: molecular dynamics results compared to density functional theory

A coarse grained model for flexible polymers end-grafted to repulsive spherical nanoparticles is studied for various chain lengths and grafting densities under good solvent conditions by molecular dynamics methods and density functional theory. With increasing chain length, the monomer density profile exhibits a crossover to the star polymer limit. The distribution of polymer ends and the linear dimensions of individual polymer chains are obtained, while the inhomogeneous stretching of the chains is characterized by the local persistence lengths. The results on the structure factor of both single chain and full spherical brush as well as the range of applicability of the different theoretical tools are presented. Finally, a brief discussion of the experiment is given.     

Real-time, local basis-set implementation of time-dependent density functional theory for excited state dynamics simulations

We present a method suitable for large-scale accurate simulations of excited state dynamics within the framework of time-dependent density functional theory (DFT). This is achieved by employing a local atomic basis-set representation and real-time propagation of excited state wave functions. We implement the method within SIESTA, a standard ground-state DFT package with local atomic basis, and demonstrate its potential for realistic and accurate excited state dynamics simulations using small and medium-sized molecules as examples (H(2), CO, O(3), and indolequinone). The method can be readily applied to problems involving nanostructures and large biomolecules.     

Effective optimized energy functional in molecular theory

M. V. Lomonosov Technological Institute, Odessa. Translated from Zhurnal Strukturnoi Khimii, Vol. 31, No. 1, pp. 11–15, January–February, 1990.     

An ab initio molecular dynamics and density functional theory study of the formation of phosphate chains from metathiophosphates

The reactions that occur between metathiophosphate (MTP) molecules are identified and examined through ab initio molecular dynamics simulations and static quantum chemical calculations at the density functional level of theory. The simulations show that certain types of MTPs can react to yield phosphate chains, while others only dimerize. These differences are rationalized in terms of reaction energies and the electronic structures of these molecules. In the reaction leading to the formation of phosphate chains, the reactive center, a tri-coordinate phosphorus atom, is continually regenerated. A polymerization mechanism linking MTPs to phosphate chains is developed on the basis of these results. This information sheds light on the underlying processes that may be responsible for the formation of phosphates under high-temperature conditions and may prove useful in the development of protocols for the rational synthesis of complex phosphate structures.     

Exchange and correlation energy in density functional theory

Several different versions of density functional theory (DFT) that satisfy Hohenberg–Kohn theorems are characterized by different definitions of a reference or model state determined by an N‐electron ground state. A common formalism is developed in which exact Kohn–Sham equations are derived for standard Kohn–Sham theory, for reference‐state density functional theory, and for unrestricted Hartree–Fock (UHF) theory considered as an exactly soluble model Hohenberg–Kohn theory. A natural definition of exchange and correlation energy functionals is shown to be valid for all such theories. An easily computed necessary condition for the locality of exchange and correlation potentials is derived. While it is shown that in the UHF model of DFT the optimized effective potential (OEP) exchange satisfies this condition by construction, the derivation shows that this condition is not, in general, sufficient to define an exact local exchange potential. It serves as a test to eliminate proposed local potentials that are not exact for ground states. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 77: 521–525, 2000     

The local orbital energy and density functional theory

From the viewpoint of density functional theory, an expression is derived which improves the average energy of a trial density. Applications to atoms and molecules are made using wave function methods and are based on properties of the variance, which is defined as $ (\overline {\varepsilon ^2 } - (\overline \varepsilon)^2)^{1/2} $, where ? is the local orbital energy. Calculated results for both Hartree-Fock and correlated wave functions are quite encouraging.     

Reaction dynamics following electron capture of chlorofluorocarbon adsorbed on water cluster: a direct density functional theory molecular dynamics study

The electron capture dynamics of halocarbon and its water complex have been investigated by means of the full dimensional direct density functional theory molecular dynamics method in order to shed light on the mechanism of electron capture of a halocarbon adsorbed on the ice surface. The CF(2)Cl(2) molecule and a cyclic water trimer (H(2)O)(3) were used as halocarbon and water cluster, respectively. The dynamics calculation of CF(2)Cl(2) showed that both C-Cl bonds are largely elongated after the electron capture, while one of the Cl atoms is dissociated from CF(2)Cl(2) (-) as a Cl(-) ion. Almost all total available energy was transferred into the internal modes of the parent CF(2)Cl radical on the product state, while the relative translational energy of Cl(-) was significantly low due to the elongation of two C-Cl bonds. In the case of a halocarbon-water cluster system, the geometry optimization of neutral complex CF(2)Cl(2)(H(2)O)(3) showed that one of the Cl atoms interacts with n orbital of water molecules of trimer and the other Cl atom existed as a dangling Cl atom. After the electron capture, only one C-Cl bond (dangling Cl atom) was rapidly elongated, whereas the other C-Cl bond is silent during the reaction. The dangling Cl atom was directly dissociated from CF(2)Cl(2) (-)(H(2)O)(3) as Cl(-). The fast Cl(-) ion was generated from CF(2)Cl(2) (-)(H(2)O)(3) on the water cluster. The mechanism of the electron capture of halocarbon on water ice was discussed on the basis of the theoretical results.     

Dynamic behavior of chemical reactivity indices in density functional theory: A Bohn-Oppenheimer quantum molecular dynamics study

Dynamic behaviors of chemical concepts in density functional theory such as frontier orbitals (HOMO/LUMO), chemical potential, hardness, and electrophilicity index have been investigated in this work in the context of Bohn-Oppenheimer quantum molecular dynamics in association with molecular conformation changes. Exemplary molecular systems like CH ₅ ⁺ , Cl⁻ (H₂O)₃₀ and Ca²⁺ (H₂O)1₅ are studied at 300 K in the gas phase, demonstrating that HOMO is more dynamic than LUMO, chemical potential and hardness often fluctuate concurrently. It is argued that DFT concepts and indices may serve as a good framework to understand molecular conformation changes as well as other dynamic phenomena.