Questioning the photophysical model for the indole chromophore in the light of evidence obtained by controlling the non-specific effect of the medium with 1-chlorobutane as solvent

In this work, we substantiate the change in the emitting state of indole caused by the dipolarity increase in the solvent 1-chlorobutane, observed on lowering the temperature from 293 to 133 K, accompanied by no significant changes in the corresponding excitation and absorption spectra. No similar changes in indole emission were observed over the temperature range 293-133 K for solutions of indole in 2-methylbutane in the presence and absence of 0.5 M 1-chlorobutane. The solvatochromism of indole in 1-chlorobutane at temperatures from 293 to 133 K allowed us to estimate the dipole moment and polarizability of the emission state of the chromophore and to detect two states (S(1) and ): one, the S(1), involving no significant change and the other, the , exhibiting a substantial change in the dipole moment of the chromophore upon electronic excitation (viz. μ(S(1)) = 2.5 and vs. μ(S(0)) = 2.13 D). The former state, S(1), is the major contributor to the structured emission of indole at temperatures from 293 to 193 K, as is the latter, S'(1) , to its structureless, red-shifted emission over the range 193-133 K. Although the emission changes of indole, dissolved in 1-chlorobutane at temperatures from 293 to 133 K, are seemingly consistent with the widely accepted photophysical model for inversion of its (1)L(b) and (1)L(a) states as the polarity of the medium is increased, below 133 K the emission becomes structured and blue-shifted, two typical features of indole above 193 K. Also, below 123 K is not feasible to photo-select the (1)L(a) state in spite of this state being the first excited electronic state of indole under large dipolarity conditions. Therefore, the established photophysical model cannot hold under these conditions and a new one accounting for these experimental facts is proposed instead.     

Effect of the alkyl chloride-to-aluminum molar ratio in the catalysts of dec-1-ene oligomerization on the product distribution and the chlorine content in the products

Dec-1-ene oligomerization in the presence of an aluminum—1-dodecyl chloride system was studied. A mixture of low-molecular-weight oligodecenes containing 25–40 wt.% dimers and 30–52 wt.% dec-1-ene trimers is formed at the molar ratios RCl/A1 = 0.5–1.5. The oligomerization was assumed to occur under the action of cationic active sites, which are formed during the reaction of 1-chlorodedecane with aluminum. At temperatures of 120–130°C and molar ratios RCl/A1 = 0.5–1.5 metallic aluminum completely dechlorinates 1-chlorododecane in a dec-1-ene medium. The character of the effect of highly dispersed Al and the RCl/A1 molar rato on the fractional composition and chlorine content in oligodecenes was revealed. The latter are formed by an aluminum—tert-butyl chloride system used in the industrial oligomerization of dec-1-ene. A mechanism of Al dissolution by alkyl chlorides with the simultaneous dechlorination of alkyl chloride and formation of cationic active sites in A1-RCl systems was proposed to explain the results obtained. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 661–665, March, 2008.     

Influence of the pH on the Formation of the Catanionic n-Tetradecylammonium Cholate Surfactant Salt

The catanionic n-tetradecylammonium cholates, with the 1:1 and 1:2 cationic:anionic surfactant molar ratio, have been synthesized by reaction of tetradecylammonium chloride and sodium cholate. The stoichiometry of the compounds formed is strongly dependent on pH of the aqueous reaction solution. In the neutral and slightly acidic medium the isolated surfactant was detected as 1:1, at acidic medium (pH ≈ 3) as 1:2, while the cholic acid alone precipitated from the strong acidic solution (pH ≈ 2). The catanionic surfactants have been characterized by elemental and spectroscopic (IR, ¹H, and ¹³C NMR) analyses, and microscopic observations. The mole fractions of individual components in precipitate present in the heterogeneous aqueous system have been determined as a function of pH. The data interpretation in the pH regions where two different kinds of precipitates coexist pointed to the complex equilibrium in the examined systems. The evaluation of the relevant equilibrium constants was solved by the nonlinear regression analysis. In the acidic region where cholic acid and 1:2 precipitate coexisted the equilibrium constants of dissolution were K ₁ = 8.4 × 10^?10 and K ₄ = 3.7 × 10^?27, respectively. In the region where 1:2 and 1:1 precipitate coexisted the equilibrium constant of dissolution of 1:1 tetradecylammonium cholate was K ₂ = 4.2 × 10^?20.     

On the relationship between the luminescence of heterometallic terbium-copper-podand complexes and the ligand structure

The formation conditions and luminescence of heterometallic Tb-Cu complexes with structurally similar podands containing different numbers of oxymethylene fragments were studied (n = 2?7). The component ratio in mono- and different-metal complexes were 1: 1 and 1: 1: 1, respectively. The possibility of complex formation for the carbonyl and enol forms was estimated by molecular mechanics. The results were in good agreement with experimental data. The most pronounced enhancement of luminescence intensity of Tb(III) ions in heterometallic Tb-Cu complexes was observed for podands containing two and three oxymethylene fragments (L1 and L2, respectively) and the probability of complex formation with these podands is higher than with the podands containing four to seven oxymethylene fragments (L3–L5).     

Assembly of a tetrathiafulvalene-anthracene dyad on the surfaces of gold nanoparticles: tuning the excited-state properties of the anthracene unit in the dyad

Due to the unique features of the tetrathiafulvalene (TTF) unit, such as the electron-donating ability and presence of methylthio groups, dyad 1 can be assembled on the surfaces of gold nanoparticles, as indicated by absorption, electrochemical, and fluorescent-spectral studies. Dyad 1 can also be disassembled by the addition of thiols. Assembly of dyad 1 on the surfaces of gold nanoparticles leads to the formation of a triad (A1-D-A2), which in turn modulates the photoinduced electron-transfer process within dyad 1. Accordingly, the fluorescence intensity of dyad 1, after assembly with gold nanoparticles, increases, and the fluorescence lifetime is prolonged. Furthermore, the assembly of dyad 1 on gold nanoparticles facilitates photodimerization of the anthracene units of dyad 1. Both fluorescence and photodimerization are associated with the excited-state behavior of the anthracene unit, thus it may be concluded that the excited-state properties of the anthracene unit can be tuned upon complexation with gold nanoparticles.     

Photoinitiated predissociation of the NO dimer in the region of the second and third NO stretch overtones

Photofragment yield spectra and NO(X(2)Pi(1/2,3/2); v = 1, 2, 3) product vibrational, rotational, and spin-orbit state distributions were measured following NO dimer excitation in the 4000-7400 cm(-1) region in a molecular beam. Photofragment yield spectra were obtained by monitoring NO(X(2)Pi; v = 1, 2, 3) dissociation products via resonance-enhanced multiphoton ionization. New bands that include the symmetric nu(1) and asymmetric nu(5) NO stretch modes were observed and assigned as 3nu(5), 2nu(1) + nu(5), nu(1) + 3nu(5), and 3nu(1) + nu(5). Dissociation occurs primarily via Deltav = -1 processes with vibrational energy confined preferentially to one of the two NO fragments. The vibrationally excited fragments are born with less rotational energy than predicted statistically, and fragments formed via Deltav = -2 processes have a higher rotational temperature than those produced via Deltav = -1 processes. The rotational excitation likely derives from the transformation of low-lying bending and torsional vibrational levels in the dimer into product rotational states. The NO spin-orbit state distribution reveals a slight preference for the ground (2)Pi(1/2) state, and in analogy with previous results, it is suggested that the predominant channel is X(2)Pi(1/2) + X(2)Pi(3/2). It is suggested that the long-range potential in the N-N coordinate is the locus of nonadiabatic transitions to electronic states correlating with excited product spin-orbit states. No evidence of direct excitation to electronic states whose vertical energies lie in the investigated energy region is obtained.     

On the minimization of the global variance in the 1-Reduced local-energy matrix

By minimizing the global variance in the 1-reduced local-energy matrix E₁( X ₁; X ₁′), subject to the normalization of the 1-reduced density matrix ρ₁( X ₁; X ₁′), one derives an integral matrix equation for E₁( X ₁; X ₁′) as a functional of ρ₁( X ₁; X ₁′) at the location ( X ₁; X ₁′) of an arbitrary member of an N (≥ 2)-particle system. The implications for the possible local improvement in the accuracy of approximate wave functions through the imposition of global constraints are briefly discussed.     

Synthesis of fragments of the glycocalyx glycan of the parasite Schistosoma mansoni

The chemical synthesis of alpha-L-Fucp-(1 --> 3)-beta-D-GalpNAc-(1 --> 4)-beta-D-GlcpNAc-(1 --> 3)-alpha-D-GalpO(CH2)5NH2, beta-D-GalpNAc-(1 --> 4)-[alpha-L-Fucp-(1 --> 3)-]beta-D-GlcpNAc-(1 --> 3)-alpha-D-GalpO(CH2)5NH2, and alpha-L-Fucp-(1 --> 3)-beta-D-GalpNAc-(1 --> 4)-[alpha-L-Fucp-(1 --> 3)-]beta-D-GlcpNAc-(1 --> 3)-alpha-D-GalpO(CH2)5NH2 is described. These structures represent fucosylated oligosaccharide fragments of the glycocalyx glycan of the cercarial stage of the parasite Schistosoma mansoni, and in protein-conjugated form they are potential diagnostics in the search for antibodies raised against the glycan in the serum of infected humans.     

Characteristic changes in the fluorescence spectra of 1-naphthol at the gelation point during the sol-gel-xerogel transitions

The fluorescence spectra of 1-naphthol were observed during the sol-gel-xerogel transitions of two different systems as a function of time; one is in the silicon and titanium (Si:Ti = 4500:1) binary systems involving no catalysts and the silicon and lithium (Si:Li = 99:1) binary systems involving HC1 as the catalyst. During the first stage of the sol-gel reaction of the 1-naphthol system, the fluorescence spectra mainly originated from the broad ’L₂ state. The fluorescence spectrum originating from the anionic species at around 470 nm increased as the reaction proceeded. It was found that the fluorescence spectra originating from the anionic species of 1-naphthol drastically decreased in both systems just after gelation. These findings indicate that it becomes difficult for the dissociation of the excited state of 1-naphthol to give a dissociative proton to the surrounding matrix. The fluorescence-excitation spectra for the Si/Ti system indicated that the main route for the excited state of 1-naphthol to form a dissociative proton is through the excited state of the contact ion pair, while the main route in the Si/Li system is via the direct excitation of the neutral 1-naphthol and its dissociation. The observed changes in the fluorescence spectra of 1-naphthol in these sol-gel systems provide a sensitive means to monitor changes during the sol-gel transition process.     

Distribution of the cationic state over the chlorophyll pair of the photosystem II reaction center

The reaction center chlorophylls a (Chla) of photosystem II (PSII) are composed of six Chla molecules including the special pair Chla P(D1)/P(D2) harbored by the D1/D2 heterodimer. They serve as the ultimate electron abstractors for water oxidation in the oxygen-evolving Mn(4)CaO(5) cluster. Using the PSII crystal structure analyzed at 1.9 ? resolution, the redox potentials of P(D1)/P(D2) for one-electron oxidation (E(m)) were calculated by considering all PSII subunits and the protonation pattern of all titratable residues. The E(m)(Chla) values were calculated to be 1015-1132 mV for P(D1) and 1141-1201 mV for P(D2), depending on the protonation state of the Mn(4)CaO(5) cluster. The results showed that E(m)(P(D1)) was lower than E(m)(P(D2)), favoring localization of the charge of the cationic state more on P(D1). The P(D1)(?+)/P(D2)(?+) charge ratio determined by the large-scale QM/MM calculations with the explicit PSII protein environment yielded a P(D1)(?+)/P(D2)(?+) ratio of ~80/~20, which was found to be due to the asymmetry in electrostatic characters of several conserved D1/D2 residue pairs that cause the E(m)(P(D1))/E(m)(P(D2)) difference, e.g., D1-Asn181/D2-Arg180, D1-Asn298/D2-Arg294, D1-Asp61/D2-His61, D1-Glu189/D2-Phe188, and D1-Asp170/D2-Phe169. The larger P(D1)(?+) population than P(D2)(?+) appears to be an inevitable fate of the intact PSII that possesses water oxidation activity.     

Rerouting the folding pathway of the Notch ankyrin domain by reshaping the energy landscape

The modular nature of repeat proteins has made them a successful target for protein design. Ankyrin repeat, TPR, and leucine rich repeat domains that have been designed solely on consensus information have been shown to have higher thermostability than their biological counterparts. We have previously shown that we can reshape the energy landscape of a repeat protein by adding multiple C-terminal consensus ankyrin repeats to the five N-terminal repeats of the Notch ankyrin domain. Here we explore how the folding mechanism responds to reshaping of the energy landscape. We have used analogous substitutions of a conserved alanine with glycine in each repeat to determine the distribution of structure in the transition state ensembles of constructs containing one (Nank1-5C1) and two consensus (Nank1-5C2) ankyrin repeats. Whereas folding of the wild-type Notch ankyrin domain is slowed by substitutions in its central repeats, (1) folding of Nank1-5C1 and Nank1-5C2 is slowed by substitutions in the C-terminal repeats. Thus, the addition of C-terminal stabilizing repeats shifts the transition state ensemble toward the C-terminal repeats, rerouting the folding pathway of the ankyrin repeat domain. These findings indicate that, for the Notch ankyrin domain, folding pathways are selected based on local energetics.     

On the volume-dependence of the index of refraction from the viewpoint of the complex dielectric function and the Kramers-Kronig relation

How indices of refraction n(omega) of insulating solids are affected by the volume dilution of an optical entity and the mixing of different, noninteracting simple solid components was examined on the basis of the dielectric function epsilon(1)(omega) + iepsilon(2)(omega). For closely related insulating solids with an identical composition and the formula unit volume V, the relation [epsilon(1)(omega) - 1]V = constant was found by combining the relation epsilon(2)(omega)V = constant with the Kramers-Kronig relation. This relation becomes [n(2)(omega) - 1]V = constant for the index of refraction n(omega) determined for the incident light with energy less than the band gap (i.e., h omega < E(g)). For a narrow range of change in the formula unit volume, the latter relation is well approximated by a linear relation between n and 1/V.     

液晶HpBAB的相变和熔化熵的同系规律性的热力学研究

在260～380 K范围内, 用DSC法研究液晶HpBAB的相变。实验查明HpBAB在室温还以玻璃性晶体状态存在。它的玻璃转变、熔化和清亮过程的热力学参数准确地被测到。提出对-正烷氧基亚苄基-对-氨基苯腈同系列中熔化熵和烷基碳原子数的线性关系; 改进Aranow统计模型并估算直线斜率为Rln(3/g)(1相似文献   

Concerning the deprotonation of the trimethylsulfonium ion by the dimethylsulfinyl anion

As shown by deuterium labelling experiments, the deprotonation of the trimethylsulfonium ion (1) by the dimsyl anion (8) is accompanied by extensive hydrogen exchange. This cannot be explained by an acid-base equilibrium between the trimethylsulfonium ion (1) and the dimsyl anion (8) on one side and dimethylsulfonium methylide (2) and DMSO on the other side, because for thermodynamic reasons this process is irreversible due to the limited life-time of 2. Therefore, the isotopic exchange that accompanies the deprotonation is an indicator of a more complex deprotonation process. It is suggested that in a kinetically controlled reaction, a proton of 1 is transferred to the O-atom of 8 rather than to the carbanionic centre. This means that instead of DMSO, its tautomer, hydroxy-methylsulfonium methylide (10), is obtained in the deprotonation process. Similarly, in the acid-base interaction between DMSO and its conjugate base 8, the formation of the DMSO tautomer 10 is kinetically favoured. The intermediate 10 produced in this way transfers a DMSO-derived proton to 1 when it intervenes in the back reaction 10 + 2→8 + 1. An alternative mechanism based on methyl group exchange between 1 and 8 could be excluded by a (13)C-labelling experiment. The hydrogen exchange according to the suggested scenario is taking place in competition with the reaction of dimethylsulfonium methylide (2) with electrophilic substrates. This explains the different degrees of isotopic exchange when compounds of different electrophilicities are used to scavenge 2 from the deprotonation-hydrogen distribution equilibria.     

Synthesis of the enantiomer of the antidepressant tranylcypromine

Both enantiomers of the antidepressant tranylcypromine, trans 2-phenyl-cyclopropy-lamine 1, were prepared in enantiomerically pure form by a chemoenzymatic approach starting from racemic (±)-(1RS, 2RS)-trans ethyl 2-phenyl-cyclopropane carboxylate (±)-3.     

Cheletropic decomposition of cyclic nitrosoamines revisited: the nature of the transition states and a critical role of the ring strain

The cheletropic decompositions of 1-nitrosoaziridine (1), 1-nitroso-Delta(3)-pyrroline (2), 7-nitroso-7-azabicyclo[2.2. 1]hepta-2,5-diene (3), and 6-nitroso-6-azabicyclo[2.1.1]hexa-4-ene (4) have been studied theoretically using high level ab initio computations. Activation parameters of the decomposition of nitrosoaziridine 1 were obtained experimentally in heptane (DeltaH()(298) = 18.6 kcal mol(-)(1), DeltaS()(298) = -7.6 cal mol(-)(1) K(-)(1)) and methanol (20.3 kcal mol(-)(1), 0.3 cal mol(-)(1) K(-)(1)). Among employed theoretical methods (B3LYP, MP2, CCD, CCSD(T)//CCD), the B3LYP method in conjunction with 6-31+G, 6-311+G, and 6-311++G(3df,2pd) basis sets gives the best agreement with experimental data. It was found that typical N-nitrosoheterocycles 2-4 which have high N-N bond rotation barriers (>16 kcal mol(-)(1)) extrude nitrous oxide via a highly asynchronous transition state with a planar ring nitrogen atom. Nitrosoaziridine 1, with a low rotation barrier (<9 kcal mol(-)(1)) represents a special case. This compound can eliminate N(2)O via a low energy linear synperiplanar transition state (DeltaH()(298) = 20.6 kcal mol(-)(1), DeltaS()(298) = 2.5 cal mol(-)(1) K(-)(1)). Two higher energy transition states are also available. The B3LYP activation barriers of the cheletropic fragmentation of nitrosoheterocycles 2-4 decrease in the series: 2 (58 kcal mol(-)(1)) > 3 (18 kcal mol(-)(1)) > 4 (12) kcal mol(-)(1). The relative strain energies increase in the same order: 2 (0 kcal mol(-)(1)) < 3 (39 kcal mol(-)(1)) < 4 (52 kcal mol(-)(1)). Comparison of the relative energies of 2-4 and their transition states on a common scale where the energy of nitrosopyrroline 2 is assumed as reference indicates that the thermal stability of the cyclic nitrosoamines toward cheletropic decomposition is almost entirely determined by the ring strain.     

Origin of the diastereoselection in the indium-mediated addition of haloallylic sulfones to aldehydes

[reaction: see text] The R(1) substituents at C(2) of the haloallylic sulfones 1 play a pivotal role in controlling the diastereoselectivity of the indium-mediated addition reaction to benzaldehyde to produce the homoallylic alcohols 3. The R(1) Me group of 1 prefers the chair form in the In-coordinated six-membered cyclic transition state to give anti-3a, and the R(1) Ph group of 1 favors the twist boat form to give syn-3n, both in a high 13:1 selectivity.     

Synthesis of the core structure of the lipoteichoic acid of Streptococcus pneumoniae

Streptococcus pneumoniae LTA is a highly complex glycophospholipid that consists of nine carbohydrate residues: three glucose, two galactosamine and two 2‐acetamino‐4‐amino‐2,4,6‐trideoxygalactose (AATDgal) residues that are each differently linked, one ribitol and one diacylated glycerol (DAG) residue. Suitable building blocks for the glucose and the AATDgal residues were designed and their synthesis is described in this paper. These building blocks permitted the successful synthesis of the core structure Glcβ(1‐3)AATDgalβ(1‐3)Glcα(1‐O)DAG in a suitably protected form for further chain extension ( 1 b , 1 c ) and as unprotected glycolipid ( 1 a ) that was employed in biological studies. These studies revealed that 1 a as well as 1 lead to interleukin‐8 release, however not via TLR2 or TLR4 as receptor.     

Changing the volume of a giant macrocycle: the swelling of the macrocycle with organic solvents

The novel tetrahedral macrocycles 1a-1c have been synthesized. Macrocycles 1a and 1c were revealed to have the property to increase in volume in solution by complexation between the macrocycle and the solvent molecules.     

Spectra and photolysis of the 1-oxides of the pyridinecarboxylic acids and pyridinecarboxamides

The ultraviolet absorption spectra of aqueous and alcoholic solutions of the pyridinemono-carboxylic acids and amides, of the vicinal pyridinedicarboxylic acids, and of the 1-oxides of these compounds, were measured and qualitatively interpreted. The photolysis of the 1-oxides in aqueous solution resulted principally in their deoxygenation. Photolysis of picolinamide 1-oxide also gave a rearrangement product, 1-formyl-2-pyrrolecarboxamide. The photolyses of the 2- and 4-monosubstituted 1-oxides were somewhat faster than those of the 3-substituted 1-oxides. The experimental results are discussed in terms of possible hydrogen-bonding effects.