Pharmacophore interactions analysis and prediction of inhibitory activity of 1,7-diazacarbazoles as checkpoint kinase 1 inhibitors: application of molecular docking, 3D-QSAR and RBF neural network

In the present study, we mainly focused on new synthesized 1,7-diazacarbazole derivatives (44 active molecules) as Chk1 inhibitors to build 3D-QSAR model. Comparative molecular field analysis (CoMFA) model with three principal components was developed. The relative contributions in building of CoMFA model were 64.41 % for steric field and 35.59 % for electrostatic field. R ² values for training and test sets of CoMFA model were 0.8724 and 0.7818, respectively, and squared correlation coefficient for leave-one-out cross-validation test (q ²) was 0.6753. To improve the predictive power, a new 3D-QSAR model was developed by using radial basis function network (RBFN) and score of CoMFA interactions energy values as input variables. Scores 1, 2 and 3 were used as input variables, and a RBFN model with seven centers and spread value equal to 95 was developed to create a nonlinear 3D-QSAR model. R ² values for training and test sets were 0.9613 and 0.8564, and q ² for leave-one-out cross-validation test was 0.9258. Docking of all molecules to 3DX ligand binding site of Chk1 receptor indicated six interactions as pharmacological interactions between compounds and binding site of receptors. These pharmacological interactions were hydrogen bonding with LEU-15 and GLU-85 in main chain and four van der Waals interactions with LEU-15, VAL-23, TYR-86 and LEU-137 in side chain. CoMFA contour plots were used to design new inhibitors, and inhibitory activity of each compound was predicted by using CoMFA and RBFN models.     

Copper,cobalt, and nickel complexes of azomethine compounds containing phenylazo group in the amine fragment: Syntheses,structures, and magnetic properties

The Cu, Ni, and Со complexes based on the following new azomethine compounds containing azobenzene groups in the ortho- or para-positions of the amine fragment are synthesized: 2-allyl-6-[(E)-[4-(E)-phenylazophenyl]iminomethyl]phenol (HL¹), 2-allyl-6-[(E)-[4-methyl-2-[(E)-phenylazo]-p-tolylazo] iminomethyl]phenol (HL²), 5-methoxy-2-[(E)-[4-[(E)-phenylazo]phenyl]iminoethyl]phenol (HL³), and 5-methoxy-2-[(E)-[4-methyl-2-[(E)-p-tolylazo]phenyl]iminomethyl]phenol (HL⁴). The structures of the complexes are determined by the data of IR and ¹Н NMR spectroscopy (for the azomethine compounds), X-ray absorption spectroscopy, and magnetochemistry. The coordination centers of all Cu complexes have a distorted square structure. A direct dependence of the geometry of the coordination polyhedron on the position of azobenzene groups in the amine fragments of the ligands is found for the Ni and Co complexes. The octahedral environment of the nickel and cobalt ions takes place in the case of the ortho-position of the amine fragment, whereas the square environment for the Ni complexes or the tetrahedral environment for the Co complexes is observed at the para-position. The molecular structures of two azomethines HL¹ and HL⁴ are determined by X-ray diffraction analysis (CIF files CCDC nos. 1552836 (HL¹) and 1552837 (HL⁴)).     

3D QSAR Modeling and Molecular Docking Studies on a Series of Triazole Analogues as Antibacterial Agents

The 3D QSAR analysis using the comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) techniques is performed on novel nalidixic acid based 1,2,4-triazole derivatives suggested earlier as antibacterial agents. The CoMFA and CoMSIA models employed for a training set of 28 compounds gives reliable values of Q² (0.53 and 0.52, respectively) and R² (0.79 and 0.85, respectively). The contour maps produced by the CoMFA and CoMSIA models are used to determine a three-dimensional quantitative structure-activity relationship. Based on the 3D QSAR contours new molecules with high predicted activities are designed. In addition, surflex-docking is performed to confirm the stability of predicted molecules in the receptor.     

Chloro- und Azidokomplexe des Vanadyl(IV)-Ions in Acetonitril,Propandiol-1,2-carbonat,Trimethylphosphat und Dimethylsulfoxid

The formation of chloro- and azidocomplexes of VO²⁺(IV) is investigated in acetonitrile (AN), propanediol-1,2-carbonate (PDC), trimethyl phosphate (TMP) by spectrophotometric, potentiometric and conductometric methods. The following coordination forms are indicated: [VOCl]⁺ inAN, PDC andDMSO), [VOCl₂] (inAN, PDC andTMP), [VOCl₃]^? (inPDC andTMP[?]), [VOCl₄]^2? (inAN, PDC andTMP); [VON₃]⁺ (inAN, PDC andDMSO), [VO(N₃)₂] (inAN, PDC, TMP andDMSO), [VO(N₃)_2+n]^n? (inAN, PDC, TMP andDMSO). The results are interpreted by the donor numbers and sterical properties of the solvent molecules.     

Synthesis and structure elucidation of some new azo dye from hydroxyquinolin-2(<Emphasis Type="Italic">1H</Emphasis>)-one derivatives and their antimicrobial evaluation

The aim of the work is synthesis of some novel azo dye from 1,2-dihydro-4-hydroxy-2-oxoquinoline-6-sulfonic acid (3), 4-hydroxy-6-methoxyquinolin-2(1H)-one (4), and 4-hydroxy-6-nitroquinolin-2(1H)-one (5). The prepared compounds were screened for antibacterial against Staphylococcus aureus, Escherichia coli, and antifungal activity against Candida sp., Aspergillus multi and Aspergillus niger. The structure of newly compounds was characterized by ¹H-NMR, IR and elemental analysis.     

Synthesis and characterization of half-sandwich ruthenium(II) complexes with N-alkyl pyridyl-imine ligands and their application in transfer hydrogenation of ketones

A series of new arene ruthenium(II) complexes were prepared by reaction of ruthenium(II) precursors of the general formula [(η⁶-arene)Ru(μ-Cl)Cl]₂ with N,N′-bidentate pyridyl-imine ligands to form complexes of the type [(η⁶-arene)RuCl(C₅H₄N-2-CH=N-R)]PF₆, with arene = C₆H₆, R = iso-propyl (1a), tert-butyl (1b), cyclohexyl (1c), cyclopentyl (1d) and n-butyl (1e); arene = p-cymene, R = iso-propyl (2a), tert-butyl (2b). The complexes were fully characterized by ¹H NMR and ¹³C NMR, UV–Vis and IR spectroscopies, elemental analyses, and the single-crystal X-ray structures of 2a and 2b have been determined. The single-crystal molecular structure revealed both compounds with a pseudo-octahedral geometry around the Ru(II) center, normally referred to as a piano stool conformation, with the pyridyl-imine as a bidentate N,N ligand. The activity of all complexes in the transfer hydrogenation of cyclohexanone in the presence of NaOH and iso-propanol is reported, the compounds showing turnover numbers of close to 1990 and high conversions. Complex 2b was also shown to be very effective for a range of aliphatic and cyclic ketones, giving conversions of up to 100 %.     

Chlorokomplexe von 3 d5-Ionen in nichtwäßrigen Lösungen

The chloro systems of Mn²⁺ and Fe³⁺ were investigated in acetonitrile (AN), propanediole-1,2-carbonate (PDC) and trimethylphosphate (TMP) by spectrophotometric, potentiometric and conductometric methods. The following coordination forms seem to be present: MnCl₂ (inAN, PDC andTMP), [MnCl₄]^2? (tetrahedral inAN, octahedral inTMP), [MnCl₆]^4? (octahedral inPDC andTMP); [FeCl]²⁺ (tetrahedral inAN andPDC), [FeCl₂]⁺ (tetrahedral inTMP), FeCl₃ (tetrahedral inAN andPDC), [FeCl₄]^? (tetrahedral inAN, PDC andTMP).     

Structural features of monomeric octahedral <Emphasis Type="Italic">d</Emphasis><Superscript>2</Superscript>-rhenium(V) monooxo complexes with oxygen atoms of bidentate-chelating neutral and acidic ligands (O,P)

The structural features of 38 mononuclear d ²-Re(V) octahedral monooxo complexes (I–XXXVIII) with oxygen atoms of bidentate-chelating (O, P) ligands (L ⁿ ) are considered. The atoms O(L ⁿ ) are mostly in trans positions to O(oxo) ligands. In three compounds of general formula [ReO(L_mono)(L ⁿ )₂] (XXXVI–XXXVIII), the O atoms of two L ⁿ ligands occupy both trans and cis positions to oxo ligands. In one complex, namely, in [ReO(L ⁿ )(L _tri ¹¹ )], n = 3 (XXXV), the atom O(L³) is in the cis position to the oxo ligand; the trans position to O(oxo) is occupied by the atom O(L _tri ¹¹ ).     

Chlorokomplexe von Ti(III), V(III) und Cr(III) in Propandiol-1,2-carbonat und Trimethylphosphat

Addition of chloride ions to the hexasolvated ions of Ti(III), V(III) and Cr(III) in propandiol-1,2-carbonate (PDC) and trimethylphosphate (TMP) may lead to the following complexes: [TiCl]²⁺ (inPDC), [TiCl₂]⁺ (inTMP), TiCl₃ (inPDC andTMP, low solubility inTMP), [TiCl₄]^? (inPDC andTMP?), [TiCl₆]^3? (inPDC); [VCl]²⁺ (inPDC andTMP), VCl₃ (inPDC andTMP, low solubility inTMP), [VCl₄]^? (inPDC); [CrCl]²⁺ (inTMP), [CrCl₂]⁺ (inPDC), CrCl₃ (inPDC andTMP), [CrCl₄]^? (inPDC).     

3D QSAR Studies on Benzyl Phenyl Ether Diamidine Derivatives with Antiprotozoal Activities

Human African trypanosomiasis (HAT) is a neglected tropical disease, and some drugs treating HAT have been used for even more than 60 years. Currently, a series of benzyl phenyl ether diamidine derivatives are discovered, which exhibit high antiprotozoal activities and low cytotoxicity, leading to good development prospects. The comparative molecular field analysis (CoMFA) and the comparative molecular similarity indices analysis (CoMSIA) are used to study the relationship between the structure and antiprotozoal activities. The established 3D QSAR model shows not only significant statistical quality, but also satisfies predictive ability: the best CoMFA model had r² = 0.958 and q² = 0.766, the best CoMSIA model had r² = 0.957 and q² = 0.812, the predictive ability of CoMFA and CoMSIA model were further confirmed by a test set which had 11 compounds, giving the correlation coefficient Q_ext² of 0.792, 0.873, respectively. The contour maps and contribution maps show important features that can improve the antiprotozoal activity: position 3 from substituent R4 should be a low electronegativity group, position 4 from substituent R₄ should have higher electronegativity, substituent R₂ should be selected to a low electronegativity and small bulk group. Together these results may offer some useful theoretical information in designing potential inhibitors.     

Synthesis,biological evaluation,quantitative-SAR and docking studies of novel chalcone derivatives as antibacterial and antioxidant agents

In the present study, a series of chalcone derivatives including 17 new compounds were synthesised; their antibacterial activities against eleven bacteria, and their free radical-scavenging activities using DPPH were evaluated. All compounds showed significant antibacterial activities against both Gram-positive and Gram-negative bacteria. In particular, compound IIIf strongly inhibited Staphylococcus aureus (JMC 2151) and Enterococcus faecalis (CARS 2011-012) with MIC values of 6.25 µg mL^?1 and 12.5 µg mL^?1, respectively, which are comparable to that of the standard antibiotic, nalidixic acid. Compound IIIg also inhibited S. aureus with a MIC value similar to that of nalidixic acid (6.25 µg mL^?1). Furthermore, like nalidixic acid (MIC value of 25 µg mL^?1), compounds IIIa, IIIc and IIId inhibited Listeria monocytogenes (ATCC 43256) with MIC values of 25 µg mL^?1, 12.5 µg mL^?1 and 25 µg mL^?1, respectively. Quantitative structure-activity relationship (Q-SAR) studies using physicochemical calculations indicated that the antibacterial activities of chalcone derivatives correlated well with predicted physicochemical parameters (logP and PSA). Docking simulation by positioning the most active compound IIIf in the active site of the penicillin-binding protein (PBP-1b) of S. aureus was performed to explore the feasible binding mode. Furthermore, most of the compounds synthesised exhibited significant DPPH radical-scavenging activity, although compounds IIc and IIIc exhibited the greatest antioxidant activity with IC₅₀ values of 1.68 µM and 1.44 µM, respectively, comparable to that of the standard antioxidant, ascorbic acid (1.03 µM).     

Azidokomplexe in nichtwäßrigen Lösungsmitteln, 3. Mitt.: Ti(III), V(III) und Cr(III) in Acetonitril,Propandiol-1,2-carbonat und Trimethylphosphat

Ions of Ti(III), V(III) and Cr(III) seem to be converted to the following azido complexes in acetonitrile, propanediol-1,2-carbonate and trimethylphosphate: [Ti(N₃)₂]⁺ (inTMP), Ti(N₃)₃ (probably distorted octahedral inAN, PDC andTMP, low solubility inTMP), [Ti(N₃)₄]^? (probably tetragonal inAN, probably octahedral inTMP), [Ti(N₃)₆ ^3? (probably distorted octahedral inAN andPDC); [V(N₃)]²⁺ (inAN, PDC andTMP), V(N₃)₃ (octahedral inAN, PDC andTMP, low solubility inTMP), [V(N₃)₄]^? (inPDC), [V(N₃)₆]^3? (octahedral inAN andPDC); [Cr(N₃)]²⁺ (inTMP), [Cr(N₃)₂]⁺ (octahedral inAN andPDC), Cr(N₃)₃ (octahedral inAN, PDC andTMP), [Cr(N₃)₆]^3? (octahedral inAN andPDC).     

Protolytic properties of cyanic and thiocyanic acids and their isoforms

The electronic structure of HOCN, HSCN, HNCO, and HNCS molecules and [OCN]^? and [SCN]^? anions has been studied by ab initio calculations at HF/6-31G(d), HF/6-31G(d, p), MP2/6-31G(d)//HF/6-31G(d), and MP2/6-31G(d, p)//HF/6-31G(d, p) levels of theory. The HNCO and HNCS molecules are shown to have higher thermodynamic stability than HOCN and HSCN, respectively. The protolyte strength series are substantiated: HSCN > HOCN, HNCS > HNCO, HOCN > HNCO, HSCN > HNCS. Computations including electron correlation [MP2/6-31G(d)//HF/6-31G(d) and MP2/6-31G(d, p)//HF/6-31G (d, p)] reproduce the general sequence of proton-donor properties: HSCN > HOCN > HNCS > HNCO, which coincides with the hydrophobicity series for the compounds. The relative proton-donor capacity of these acids in water solutions is generally governed by the electronic structure and by the size of their molecules and [OCN]^? and [SCN]^? anions, but not by medium effects.     

Synthesis,crystal structure,and antibacterial activity of oxovanadium(V) complexes derived from <Emphasis Type="Italic">N</Emphasis>'-[1-(5-fluoro-2-hydroxyphenyl)methylidene]nicotinohydrazide and <Emphasis Type="Italic">N</Emphasis>'-(5-fluoro-2-hydroxybenzylidene)-2-hydroxynaphthylhydrazide

Two new oxovanadium(V) complexes, [VOL¹(OCH₃)(CH₃OH)] (I) and [VOL²(OCH₃)] (II), where L¹ and L² are the di-anionic form of N'-[1-(5-fluoro-2-hydroxyphenyl)methylidene]nicotinohydrazide and N'-(5-fluoro-2-hydroxybenzylidene)-2-hydroxynaphthylhydrazide, respectively, have been synthesized and characterized by elemental analysis, FT-IR spectra, and single crystal X-ray determination (CIF files CCDC nos. 891852 (I), 891853 (II)). The crystal of I is monoclinic: space group P2₁/c, a = 8.061(1), b = 15.293(2), c = 13.471(2) Å, ß = 92.595(2)°, V = 1658.8(4) ų, Z = 4. The crystal of II is monoclinic: space group P2₁/n, a = 7.4454(9), b = 8.0833(9), c = 28.906(2) Å, ß = 92.644(2)°, V = 1737.8(3) ų, Z = 4. The V atom in I is in an octahedral coordination, and that in II is in a square-pyramidal coordination. The antibacterial activity of the compounds against various bacteria was assayed.     

Synthesis,X-ray crystal structures,and antibacterial activities of Schiff base nickel(II) complexes with similar tetradentate Schiff bases

Two new mononuclear complexes, [NiL¹] · CH₃OH (I) and [NiL²] (II), have been prepared from the tetradentate Schiff bases N,N'-bis(5-methylsalicylidene)ethylenediamine (H₂L¹) and N,N'-bis(5-methylsalicylidene)- o-phenylenediamine (H₂L₂), respectively. The complexes have been characterized by physico-chemical and spectroscopic methods, as well as single-crystal X-ray determination (CIF files nos. 1428969 (I), 1428968 (II)). Complex I crystallizes in the triclinic space group P1 with a = 6.7387(14), b = 10.7010(17), c = 12.681(2) Å, α = 87.059(2)°, β = 88.828(2)°, γ = 89.901(2)°, V = 913.0(3) ų, Z = 2. Complex II crystallizes in the monoclinic space group P2₁/n with a = 12.1437(11), b = 8.0537(8), c = 18.4545(18) Å, β = 105.088(2)°, V = 1742.7(3) ų, Z = 4. The nickel atoms in the complexes are coordinated by two phenolate O and two imine N atoms of the tetradentate Schiff base ligands, forming square planar coordination. The complexes and the Schiff base compounds were assayed for antibacterial activities against three Gram-positive bacterial strains (B. subtilis, S. aureus, and St. faecalis) and three Gram-negative bacterial strains (E. coli, P. aeruginosa, and E. cloacae) by MTT method. As a result, the complexes showed effective antimicrobial activity against the microorganisms tested.     

Synthesis of bifunctional thieno[3,2-c]pyrazole,pyrazolothieno[2,3-d]pyrimidin derivatives and their antimicrobial activities

A simple and convenient route was performed for the synthesis of some new heterocyclic compounds based on thieno[3,2-c]pyrazole derivative for antimicrobial evaluation. The key intermediate, 5-amino-3-methyl-1-phenyl-1H-thieno[3,2-c]pyrazole-6-carbohydrazide 3, was prepared by Gewald’s synthesis of Ethyl 5-amino-3-methyl-1-phenyl-1H-thieno[3,2-c]pyrazole-6-carboxylate 2. This intermediate reacted with various reagents to afford different fused and polyfunctional substituted. The structures of these compounds were confirmed by elemental analysis, IR, ¹H NMR, ¹³C NMR and mass spectral data. All the new synthesized compounds were screened for various microorganisms such as Aspergillus fumigatus; Geotrichum candidum; Syncephalastrum racemosum (Fungus); Candida albicans (Yeast fungus); Staphylococcus aureus; Bacillus subtilis (as Gram-positive bacteria); Pseudomonas aeruginosa and Escherichia coli (as Gram-negative bacteria) by the disc diffusion method. In general, the novel synthesized compounds possessed moderate to high antimicrobial activity against the previously mentioned microorganisms.     

Solution Thermodynamics of <Emphasis Type="Italic">N</Emphasis>,<Emphasis Type="Italic">N</Emphasis><Superscript>/</Superscript>-Ethylenebis-(salicylideneiminato)-diaquochromium(III) Chloride in Aqueous Dimethylsulphoxide

The densities, viscosities and refractive indices of N,N ^/-ethylene-bis(salicylideneiminato)-diaquochromium(III) chloride, [Cr(salen)(H₂O)₂]Cl, in aqueous dimethylsulfoxide (DMSO) with different mass fractions (w ₂ = 0.20, 0.40, 0.60, 0.80 and 1.00) of DMSO were determined at 298.15, 308.15 and 318.15 K under atmospheric pressure. From measured densities, viscosities and refractive indices the apparent molar volumes (V _φ ), standard partial molar volume (V _φ ⁰ ), the slope (S _V ^* ), standard isobaric partial molar expansibility (φ _E ⁰ ) and its temperature dependence (?φ _E ⁰ /?T) _p , the viscosity B-coefficient, its temperature dependence (?B/?T), solvation number (S _n ) and apparent molar refractivity (R _D ^φ ), etc., were calculated and discussed on the basis of ion–ion and ion–solvent interactions. These results revealed that the solutions are characterized by ion–solvent interactions rather than by ion–ion interactions and the complex behaves as a long range structure maker. Thermodynamics of viscous flow was discussed in terms of transition state theory.     

Lanthanide complexes with the Schiff base containing sterically hindered phenol: Synthesis,structure, and luminescence properties

The syntheses of the 2,6-di-tert-butyl-4-(2-hydroxybenzylideneamino)phenolate (L) complexes of Gd (I), Nd (II), Er (III), Yb (IV), Tm (V), Sm (VI), and Tb (VII) are described. The structures of the Gd and Er complexes are determined by X-ray diffraction analysis (CIF files CCDC nos. 1558820 (I) and 1558819 (III)). All synthesized compounds exhibit ligand-centered photoluminescence in a range of 405–485 nm. In addition, the luminescence spectra of solid samples of the neodymium and ytterbium complexes contain narrow bands of f–f transitions characteristic of Nd³⁺ and Yb³⁺ ions.     

Synthesis and sorption properties of layered hydrous manganese dioxide saturated with <Emphasis Type="Italic">s</Emphasis>-, <Emphasis Type="Italic">p</Emphasis>-, and <Emphasis Type="Italic">d</Emphasis>-metal cations

Layered compounds based on hydrous manganese dioxide (hereafter, Mn-phases) saturated with s-metal (Ba²⁺), p-metal (Pb²⁺), and d-metal (Mn²⁺, Co²⁺, Ni²⁺, Cu²⁺, Zn²⁺, and Cd²⁺) cations, analogues of manganese minerals of oceanic ferromanganese formations (vernadite, birnessite, buserite-I, and asbolan), were prepared at 4–6°C. All Mn-phases have poorly ordered structures. The sorption properties of phase compounds were studied in relation to alkali-metal (Na⁺ and K⁺) and other s-, p-, and d-metal cations. The exchange capacities of Mn-phases for alkali cations are very low, within 0.02–0.10 mg-equiv/g; for the other cations, the exchange capacities are 0.13–4.20 mg-equiv/g. The sorption of divalent metal cations depends on the phase and chemical composition of the Mn-phase.