Neutral helium compounds: theoretical evidence for a large class of polynuclear complexes

Ab initio calculations at the MP2 and CCSD(T) levels of theory disclose the conceivable existence of neutral complexes containing up to four helium atoms. These species are formally obtained by replacing the hydrogen atoms of parent molecules such as CH(4), SiH(4), NH(3), PH(3), H(2)O, H(2)S, C(2)H(2), C(2)H(4), and C(6)H(6) with -NBeHe moieties, which behave as monovalent functional groups containing helium. The geometries and vibrational frequencies of these M(NBeHe)(n) (n>1; M=central moiety) polyhelium complexes have been investigated at the MP2(full)/6-31G(d) level of theory, and their stability with respect to the loss of helium atom(s) has been evaluated by means of single-point calculations at the CCSD(T)/6-311G(d,p) level of theory. Molecules such as H(n)C(NBeHe)(4-n) and H(n)Si(NBeHe)(4-n) (n=0-3), C(2)(NBeHe)(2), and ortho-, meta-, and para-C(6)H(4)(NBeHe)(2) were invariably characterized as energy minima, and were found to be stable with respect to the loss of helium atom(s) by approximately 4-5 kcal mol(-1). On the other hand, species such as C(2)(NBeHe)(4) and C(6)(NBeHe)(6) were characterized as high-order saddle points on the potential-energy surface, and were unstable with respect to helium atom(s) loss owing to the bending motion of the -NBeHe groups. The molecules containing N, P, O, or S as the central atom also showed a variable topology and include second-order saddle points such as S(NBeHe)(2), third-order saddle points such as HN(NBeHe)(2), but also minimum-energy structures such as O(NBeHe)(2) and HP(NBeHe)(2), which are also stable by approximately 5 kcal mol(-1) with respect to the helium atom(s) loss. These results suggest the conceivable existence of an, in principle, very large class of M(NBeHe)(n) (n>1) polyhelium complexes, whose stability may be substantially affected by the nature and the size of the central moiety M. Atoms-in-Molecules (AIM) calculations on selected species invariably suggest that, in our investigated M(NBeHe)(n) (n>1) compounds, the beryllium-helium interaction is essentially electrostatic.     

A Valence Bond Model for Electron‐Rich Hypervalent Species: Application to SFn (n=1, 2, 4), PF5, and ClF3

Some typical hypervalent molecules, SF₄, PF₅, and ClF₃, as well as precursors SF (⁴Σ^? state) and SF₂ (³B₁ state), are studied by means of the breathing‐orbital valence bond (BOVB) method, chosen for its capability of combining compactness with accuracy of energetics. A unique feature of this study is that for the first time, the method used to gain insight into the bonding modes is the same as that used to calculate the bonding energies, so as to guarantee that the qualitative picture obtained captures the essential physics of the bonding system. The ⁴Σ^? state of SF is shown to be bonded by a three‐electron σ bond assisted by strong π back‐donation of dynamic nature. The linear ³B₁ state of SF₂, as well as the ground states of SF₄, PF₅ and ClF₃, are described in terms of four VB structures that all have significant weights in the range 0.17–0.31, with exceptionally large resonance energies arising from their mixing. It is concluded that the bonding mode of these hypervalent species and isoelectronic ones complies with Coulson’s version of the Rundle–Pimentel model, but assisted by charge‐shift bonding. The conditions for hypervalence to occur are stated.     

Rationalization of the behavior of M2(CH3CS2)4I (M = Ni,Pt) chains at room temperature from periodic density functional theory and ab initio cluster calculations

The electrical conductivities and plausible charge‐ordering states in the room temperature (r.t.) phase for MMX chains [Ni₂(dta)₄I]_∞ and [Pt₂(dta)₄I]_∞ (dta = CH₃CS) have been analyzed with periodic density functional theory (DFT) and correlated ab initio calculations combined with the effective Hamiltonian theory. Periodic DFT calculations show a more delocalized nature of the ground state in [Pt₂(dta)₄I]_∞ compared to [Ni₂(dta)₄I]_∞, which features a rather large energy gap between the occupied and empty bands, and charge polarized dimer units. A larger electrical conductivity for the Pt chain can be expected, especially because the Fermi level lies within a band with contributions from Pt and I orbitals. Electronic structure parameters extracted from ab initio cluster calculations show that the large difference between the observed conductivities at 300 K for Ni and Pt compounds, of 3 orders of magnitude, cannot be explained from the parameters extracted from an embedded M₂(dta)₄I₂ dimer fragment alone. When tetramer fragments are considered, we observe that the interdimer transfer integral (t) between neighboring M₂ units connected by an iodine atom at correlated level is comparable in both chains. On the other hand, the energy to transfer an electron from a dimer to the neighboring one (Coulomb repulsion U) is three times larger in the Ni compound with respect to the Pt chain, in line with the poor conductivity of the former. The electronic structure of the M₄(dta)₈I₃ fragment points to an alternate charge‐polarization state for Ni and an average valence state for Pt when the r.t. X‐ray structure is considered. © 2012 Wiley Periodicals, Inc.     

Synthesis and Reactivity of Functionalized Binary and Ternary Thiometallate Complexes [(RT)4S6], [(RSn)3S4]2−, [(RT)2(CuPPh3)6S6], and [(RSn)6(OMe)6Cu2S6]4− (R=C2H4COOH,CMe2CH2COMe; T=Ge,Sn)

Caged chalcogens : A series of novel, functionalized T_nS_m cages (T=Ge, Sn; n/m=4:6, 3:4) with terminal COO(H) or COMe groups were synthesized and show further reactivity toward Cu^I complexes (an example of which is shown here) and to hydrazines. This led to the generation of functionalized Cu/T/S clusters or the formation of Schiff bases at the C?O groups, respectively, with or without further fragmentation of the T/S core.

     

Substituent Effect on the Electronic Properties and Nature of the W≡C Bond in trans‐Cl(OC)(H3P)3W(≡C‐para‐C6H4X) (X = H,F, SiH3, CN,NO2, SiMe3, CMe3, NH2, NMe2) Complexes: A Computational Quantum Chemistry Study

In this investigation, we describe substituent effect on the dipole moment, ionization potential, electron affinity, structure, frontier orbitals energy, in the trans‐Cl(OC)(H₃P)₃W(≡C‐para‐C₆H₄X) (X = H, F, SiH₃, CN, NO₂, SiMe₃, CMe₃, NH₂, NMe₂) complexes using MPW1PW91 quantum chemical calculations. The nature of chemical bond between the [Cl(OC)(H₃P)₃W]⁻ and [C‐para‐C₆H₄X]⁺ fragments was illustrated with energy decomposition analysis (EDA). Percentage composition in terms of the defined groups of frontier orbitals for these complexes was inspected to investigate the character in metal–ligand bonds. Quantum theory of atoms in molecules (QTAIM) was used for illustration of metal–ligand bonds in these complexes.     

Prevalence of the alkyl/phenyl-folded conformation in benzylic compounds C6H5CH2-X-R (X=O,CH2, CO,S, SO,SO2): significance of the CH/pi interaction as evidenced by high-level ab initio MO calculations

Ab initio MO calculations were carried out to examine the conformational energies of various benzylic compounds C(6)H(5)CH(2)XR (X=O, CH(2), CO, S, SO, SO(2); R=CH(3), C(2)H(5), iC(3)H(7), tC(4)H(9)) at the MP2/6-311G(d,p)//MP2/6-31G(d) level. Rotamers with R/Ph in gauche relationship are generally more stable than the R/Ph anti rotamers. In these stable geometries, the interatomic distance in the interaction of alpha- or beta-CH in the alkyl group and the ipso-carbon atom of the phenyl ring is short. The computational results are consistent with experimental data from supersonic molecular jet spectroscopy on 3-n-propyltoluene and NMR and crystallographic data on structurally related ketones, sulfoxides, and sulfones. In view of this, the alkyl/phenyl-congested conformation of these compounds has been suggested to be a general phenomenon, rather than an exception. The attractive CH/pi interaction has been suggested to be a dominant factor in determining the conformation of simple aralkyl compounds.     

Synthesis of the anisobidentate compound bis(2-amino-cyclopent-1-ene-carbodithioate)diethyltin (IV). Experimental and theoretical study

The bis(2-amino-1-cyclopentenecarbodithioate)diethyltin (IV) compound (1) was synthesized by reacting diethyltin (IV) chloride with two equivalents of sodium 2-amino-1-cyclopentenecarbodithioate. The structure of (1) was determined by FT-IR and multinuclear magnetic resonance (¹H, ¹³C, ¹¹⁹Sn) spectroscopy, mass spectrometry and X-ray diffraction methods. The geometry obtained around Tin is a skewed trapezoidal bipyramid with both organic residues in mutual trans-positions. To study the coordination of Tin, theoretical calculations at Hartree-Fock (HF) level were carried out. Results for relativistic, quasi-relativistic and non-relativistic pseudopotentials are reported. The concept of local bond order is defined and applied to quantify the weak local interaction between the thiocarbonyl sulfur atom and Tin.     

ChemInform Abstract: Metal-Metal Bonding and Charge Localization in (Ru2X9)n-, X: Cl or Br; n = 1, 2, 3, 4. A Spectroelectrochemical Study

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.     

Interactions with ATP, DNA Cleavage and Anti-tumor Activities of Complexes with Anions [Mo（V）O2（O2CeH4）2]^3-, [Mo（Ⅴ）0.5W（Ⅵ）0.5O2（O2C6H4）2]^2.5- and [W（Ⅵ）O2（O2C6H4）2]^2-

(NH3CH2CH2NH2)3[Mo(Ⅴ)O2(O2C6H4)2] (1), (NH3CH2CH2NH2)2.5[Mo(Ⅴ)o.sW(Ⅵ)o.502(O2C6H4)2] (2) and(NH3CH2CH2NH2)2[VC(Ⅵ)O2(O2C6H4)2] (3) were synthesized, structurally characterized by X-ray diffraction analysis, and studied on their interactions with ATP, their DNA cleavage activities and antitumor properties. The redox state of molybdenum was not changed on going from crystal to aqueous solutions in complexes 1 and 2, while tungsten underwent reduction from W(VI) to W(V) in complexes 2 and 3. ATP promoted the oxidation of both molybdenum and tungsten from M(Ⅴ) to M(Ⅵ) and the hydrolysis of catecholate ligands in solution consisting of ATP and the complexes. Complex 1 possesses fairly good activity to DNA cleavage and against tumor S180 in mice, and is more effective than the control drug cyclophosphamide under the identical conditions. However, complexes 2 and 3 exhibited marginal effectiveness. The effectiveness of anti-tumor of the complexes was related positively to their DNA cleavage activities and their hydrolysis of catecholate ligands.     

Optical spectroscopy of (C2H5NH3)2CdCl4:Cu2+ under pressure: Study of Cu2+ local structure from theoretical calculations

The variations experienced by the energy E_u(π) of the e_u(π)→b_1g (～x²–y²) charge‐transfer transition of (C₂H₅NH₃)₂CdCl₄:Cu²⁺ upon pressure in the 0‐ to 40‐kbar range have been measured at room temperature by means of a sapphire anvil cell. These data reveal that E_u(π) undergoes a red shift of 1400 cm^?1 on passing from ambient pressure to 40 kbars. To understand this puzzling result theoretical calculations of ?E_u(π)/?R_eq and ?E_u(π)/?R_ax have been performed where R_eq and R_ax mean the equatorial and axial Cu²⁺–Cl^? distances of the elongated CuCl₆^4? complex, respectively. All results indicate that ?E_u(π)/?R_eq and ?E_u(π)/?R_ax for R_eq=228 pm and R_ax=297 pm are indeed negative. Moreover ab initio complete active space self‐consistent field (CASSCF/CASPT2) and density functional calculations lead to ?E_u(π)/?R_ax values, which are about 10 times smaller than those of ?E_u(π)/?R_eq. From the ensemble of experimental and theoretical results, it is concluded that a pressure of 40 kbars gives rise to a decrement of ≈25 pm of the axial distance and at the same time to an increase of ≈7 pm of the equatorial one. It is stressed that the present study on a diluted Jahn–Teller impurity lies far beyond the current possibilities of X‐ray absorption structure techniques. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Theoretical study on structures and vibrational spectra of M+(H2O)Ar (M = Cu,Ag, Au)

A theoretical study on the structures and vibrational spectra of M⁺(H₂O)Ar_0‐1 (M = Cu, Ag, Au) complexes was performed using ab initio method. Geometrical structures, binding energies (BEs), OH stretching vibrational frequencies, and infrared (IR) absorption intensities are investigated in detail for various isomers with Ar atom bound to different binding sites of M⁺(H₂O). CCSD(T) calculations predict that BEs are 14.5, 7.5, and 14.4 kcal/mol for Ar atom bound to the noble metal ion in M⁺(H₂O)Ar (M = Cu, Ag, Au) complexes, respectively, and the corresponding values have been computed to be 1.5, 1.3, and 2.1 kcal/mol when Ar atom attaches to a H atom of water molecule. The former structure is predicted to be more stable than the latter structure. Moreover, when compared with the M⁺(H₂O) species, tagging Ar atom to metal cation yields a minor perturbation on the IR spectra, whereas binding Ar atom to an OH site leads to a large redshift in OH stretching vibrations. The relationships between isomers and vibrational spectra are discussed. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

ChemInform Abstract: Spectroscopic and Structural Studies of Difluorophosphoryl Azide F2P(O)N3, Difluorophosphoryl Isocyanate F2P(O)NCO,and Difluorophosphoric Acid Anhydride,F2(O)POP(O)F2.

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.     

Reaction of the Pincer‐type Ligand {2, 6‐[P(O)(OEt)2]2‐4‐tert‐Bu‐C6H2}— with [Ph3C]+[PF6]—. Unprecedented Rearrangement and Carbon‐Carbon Bond Formation

The reaction of the organolithium derivative {2, 6‐[P(O)(OEt)₂]₂‐4‐tert‐Bu‐C₆H₂}Li ( 1 ‐Li) with [Ph₃C]⁺[PF₆]^— gave the substituted biphenyl derivative 4‐[(C₆H₅)₂CH]‐4′‐[tert‐Bu]‐2′, 6′‐[P(O)(OEt)₂]₂‐1, 1′‐biphenyl ( 5 ) which was characterized by ¹H, ¹³C and ³¹P NMR spectroscopy and single crystal X‐ray analysis. Ab initio MO‐calculations reveal the intramolecular O···C distances in 5 of 2.952(4) and 2.988(5)Å being shorter than the sum of the van der Waals radii of oxygen and carbon to be the result of crystal packing effects. Also reported are the synthesis and structure of the bromine‐substituted derivative {2, 6‐[P(O)(OEt)₂]₂‐4‐tert‐Bu]C₆H₂}Br ( 9 ) and the structure of the protonated ligand 5‐tert‐Bu‐1, 3‐[P(O)(OEt)₂]₂C₆H₃ ( 1 ‐H). The structures of 1 ‐H, 5 , and 9 are compared with those of related metal‐substituted derivatives.     

A quarter of a century after its synthesis and with >200 papers based on its use, `Co(CO3)0.5(OH)·0.11H2O′ proves to be Co6(CO3)2(OH)8·H2O from synchrotron powder diffraction data

The successful attempt to solve the crystal structure of Co(CO₃)_0.5(OH)·0.11H₂O (denoted CCH ), based on synchrotron powder diffraction data, leads to a drastic revision of the chemical formula to Co₆(CO₃)₂(OH)₈·H₂O [hexacobalt(II) bis(carbonate) octahydroxide monohydrate] and to a hexagonal cell instead of the orthorhombic cell suggested previously [Porta et al. (1992). J. Chem. Soc. Faraday Trans. 88 , 311–319]. This results in a new structure‐type related to malachite involving infinite chains of [CoO₆] octahedra sharing edges along a short c axis, delimiting tunnels having a three‐branched star section. All reports discussing cobalt hydroxycarbonates ( CCH ) without any structural knowledge and especially its topotactic decomposition into Co₃O₄ have, as a result, to be reconsidered.     

Application in the cyclohexane oxidation of a scorpionate oxovanadium(IV) complex: synthesis,structure, and properties of VO(C5H7O2)(BC9H7N6I3)

An oxovanadium(IV) complex, VO(C₅H₇O₂)(BC₉H₇N₆I₃), derived from hydrotris(4-iodinpyrazolyl)borate was designed and synthesized at room temperature in methanol. The complex was characterized by elemental analysis, IR spectra, UV-Vis spectroscopy, and single-crystal X-ray diffraction. The structural analysis shows that the vanadium(IV) center possesses a distorted-octahedral geometry with a N₃O₃ core, containing a tridentate hydrotris(4-iodinpyrazolyl)borate with nitrogen as three donors. The complex is the first structurally characterized example of a vanadium(IV) complex with hydrotris(4-iodinpyrazolyl)borate. It was used as a catalyst for cyclohexane oxidation under mild conditions and the effects of a variety of factors such as amount of acid and H₂O₂, the kind of solvent, as well as temperatures were evaluated; the maximum turnover number value reaches 321.     

The Analysis of Electronic Structures,NBO, EDA,and QTAIM of trans‐(H3P)2(η2‐BH4 )W(≡C‐para‐C6H4X)(CO) Complexes

In the present research, the impact of substitution on the dipole moment, electronic structure, and frontier orbital energy in trans ‐(H₃P )₂(η²‐BH₄ )W(≡C‐para ‐C₆H₄X )(CO ) complexes (X = H, F, SiH₃ , CN , NO₂ , SiMe₃ , CMe₃ , NH₂ , NMe₂ ) was studied with mpw1pw91 quantum chemical computations. The nature of the chemical bond between the trans‐[Cl(η²‐BH₄ )(H₃P ) ₂W ]⁻ and [C‐para ‐C₆H₄X ]⁺ fragments was demonstrated through energy decomposition analysis (EDA ). The percentage composition in terms of the specified groups of frontier orbitals was examined for these complexes to investigate the feature in metal–ligand bonds. Quantum theory of atoms in molecules (QTAIM ) and natural bond orbital (NBO ) analysis were applied to elucidate these complexes’ metal–ligand bonds.     

Syntheses and Properties of Tetrakis(pentafluorophenyl)tellurium,Te(C6F5)4, and Related Compounds — Single Crystal Structures of Tris(pentafluorophenyl)tellurium Bromide,Te(C6F5)3Br,Tris(pentafluorophenyl)tellurium Trifluoromethanesulfonate, [Te(C6F5)3][OSO2CF3], and Bis(pentafluorophenyl)tellurium Oxide,Te(C6F5)2O

Te(C₆F₅)₄ was prepared from the reactions of TeCl₄ or Te(C₆F₅)₂Cl₂ with Grignard reagents or AgC₆F₅ in moderate to good yields. Substitution reactions with Me₃SiX (X = Cl, Br, OSO₂CF₃), with equimolar amounts of Br₂, with AgNO₃ and with H[BF₄] or BF₃·OEt₂ yielded the Te(C₆F₅)₃X derivatives (X = Cl, Br, OSO₂CF₃, NO₃, BF₄). Oxidation reactions of Cd, Hg, and Pd⁰ complexes led to Te(C₆F₅)₂ and the corresponding bis(pentafluorophenyl) derivatives M(C₆F₅)₂ (M = Cd, Hg, Pd) and with InBr to In(C₆F₅)₂Br. From very slow hydrolysis of Te(C₆F₅)₄ the oxide Te(C₆F₅)₂O was prepared. The thermal decomposition, the NMR and mass spectra of the partially new compounds are discussed. The crystal structures of Te(C₆F₅)₃Br (monoclinic, P2₁/a, Z = 4), [Te(C₆F₅)₃][OSO₂CF₃] (monoclinic, P2₁/n, Z = 16) and [Te(C₆F₅)₂O]₂ (triclinic, P1¯, Z = 2) were determined.     

(2‐Aminopyrimidine‐κN1)aqua(pyridine‐2,6‐dicarboxylato‐κ3O2,N,O6)copper(II): X‐ray and DFT calculated structure

In the title compound, [Cu(C₇H₃N₂O₄)(C₄H₅N₂)(H₂O)], (I), pyridine‐2,6‐dicarboxylate (pydc²⁻), 2‐aminopyrimidine and aqua ligands coordinate the Cu^II centre through two N atoms, two carboxylate O atoms and one water O atom, respectively, to give a nominally distorted square‐pyramidal coordination geometry, a common arrangement for copper complexes containing the pydc²⁻ ligand. Because of the presence of Cu...X_bridged contacts (X = N or O) between adjacent molecules in the crystal structures of (I) and three analogous previously reported compounds, and the corresponding uncertainty about the effective coordination number of the Cu^II centre, density functional theory (DFT) calculations were used to elucidate the degree of covalency in these contacts. The calculated Wiberg and Mayer bond‐order indices reveal that the Cu...O contact can be considered as a coordination bond, whereas the amine group forming a Cu...N contact is not an effective participant in the coordination environment.     

Existence of dynamic tautomerism and divalent N(I) character in N‐(pyridin‐2‐yl)thiazol‐2‐amine

N‐(Pyridin‐2‐yl)thiazol‐2‐amine is a versatile chemical functional unit present in many therapeutically important species. Quantum chemical analysis shows that there are six competitive isomeric structures possible for this class of compounds within a relative energy difference of ～4 kcal/mol. Some of the isomeric structures possess divalent N(I) character. There appears to be a competition between the thiazole and pyridine groups to accommodate the tautomeric hydrogen, and consequently show electron donating property in the structure with R‐N←L representation. Details of electron distribution, tautomeric preferences, protonation energy, and divalent N(I) character, and so on, of this class of compounds are presented in this article. Subsequently, upon protonation, (L→N←L)^⊕ character is clearly evident in these moieties as molecular orbital analysis clearly shows two lone pairs of electrons on the central nitrogen, in this system. © 2013 Wiley Periodicals, Inc.