A microwave and quantum chemical study of (trifluoromethyl)thiolacetic acid, CF3COSH, a compound with an unusual double-minimum potential

The microwave spectra of CF3COSH and one deuterated species, CF3COSD, have been investigated by Stark spectroscopy in the 40-80 GHz spectral range at -78 degrees C and by quantum chemical calculations using the HF, MP2, and B3LYP procedures with the aug-cc-pVTZ basis set. The microwave spectrum of one conformer was assigned. The conformations of the COSH and CF3 groups determine the overall conformation of this rotamer. It was not possible experimentally to find precise values for the associated dihedral angles, but it appears that the COSH group is distorted somewhat from an exact synperiplanar arrangement, while the CF3 group is rotated several degrees from a position where one of the C-F bonds eclipses the C-S bond. This rotamer tunnels through a transition state that has an exact Cs symmetry, where one C-F bond eclipses the C-S bond and the COSH group is synperiplanar. Relative intensity measurements yielded 28(15) cm-1 for the tunneling frequency. Two additional vibrationally excited states were assigned and their frequencies determined to be 94(30) and 184(40) cm-1, respectively. The theoretical calculations predict conflicting conformational properties for the identified rotamer. The B3LYP calculations find an exact synperiplanar arrangement for the COSH group, whereas the MP2 and HF calculations predict that this group is distorted slightly form this conformation. One of the C-F bonds is found to eclipse the C-S bond in the B3LYP calculations, while the MP2 calculations predict a slight deviation and the HF calculations a large deviation from the eclipsed position, as the corresponding F-C-C-S dihedral angle is calculated to be 0.9 degrees (MP2) and 27.6 degrees (HF). All three methods of calculations predict that a second rotamer coexists with the identified form but is several kJ/mol less stable. The spectrum of this form, which has overall Cs symmetry and is predicted to have an antiperiplanar conformation for the COSH group with one of the C-F bonds eclipsing the C=O bond, was not identified.     

Microwave and quantum chemical study of propa-1,2-dienyl thiocyanate (H2C=C=CHSC triple bond N)

The microwave spectrum of propa-1,2-dienyl thiocyanate (H2C=C=CHSC triple bond N) has been investigated in the 24-40 and 50-80 GHz spectral regions. The spectrum of one conformer was assigned. This rotamer, which has a C-C-S-C dihedral angle of about 134 degrees from synperiplanar, is at least 2 kJ/mol more stable than any other form. Two vibrationally excited states assumed to belong to the first excited state of the C-S torsional vibration and to a low bending mode were assigned. Their frequencies were determined to be 62(20) and 155(30) cm-1, respectively. The microwave work has been augmented by ab initio calculations at the MP2/aug-cc-pVTZ and density functional theory calculations at the B3LYP/aug-cc-pVTZ level of theory. The B3LYP calculations are generally in better agreement with the observations than the MP2 calculations.     

Microwave spectrum, conformation and intramolecular hydrogen bonding of 2,2,2-trifluoroethanethiol (CF3CH2SH)

The microwave spectrum of 2,2,2-trifluoroethanethiol, CF3CH2SH, and of one deuterated species, CF3CH2SD, has been investigated in the 7-80 GHz spectral interval. The microwave spectra of the ground and three vibrationally excited states belonging to three different normal modes of one conformer were assigned for the parent species, and the vibrational frequencies of these fundamentals were determined by relative intensity measurements. Only the ground vibrational state was assigned for the deuterated species. The identified form has a synclinal arrangement for the H-S-C-C chain of atoms and the corresponding dihedral angle is 68(5) degrees from synperiplanar (0 degrees). A weak intramolecular hydrogen bond formed between the thiol (SH) group and one of the fluorine atoms is stabilizing this conformer. There is no evidence in the microwave spectrum for the H-S-C-C antiperiplanar form. The hydrogen atom of the thiol group should have the ability to tunnel between two equivalent synclinal potential wells, but no splittings of spectral lines due to tunneling were observed. The microwave work was augmented by quantum chemical calculations at the B3LYP/aug-cc-pVTZ and MP2/aug-cc-pVTZ levels of theory.     

Structural and conformational properties of 2-propenylgermane (allylgermane) studied by microwave and infrared spectroscopy and quantum chemical calculations

The structural and conformational properties of allylgermane have been investigated using Stark and Fourier transform microwave spectroscopies, infrared spectroscopy, and high-level quantum chemical calculations. The parent species H2C=CHCH2GeH3 was investigated by microwave spectroscopy and infrared spectroscopy, while three deuterated species, namely, H2C=CDCH2GeH3, H2C=CHCHDGeH3, and H2C=CHCH2GeD3, were studied only by infrared spectroscopy. The microwave spectra of the ground vibrational state as well as of the first excited state of the torsion vibration around the sp2-sp3 carbon-carbon bond were assigned for the 70Ge, 72Ge, and 74Ge isotopomers of one conformer. This rotamer has an anticlinal arrangement for the C=C-C-Ge chain of atoms. The infrared spectrum of the gas in the 500-4000 cm(-1) range has been assigned. No evidence of additional rotameric forms other than anticlinal was seen in the microwave and infrared spectra. Several different high-level ab initio and density functional theory calculations have been performed. These calculations indicate that a less stable form, having a synperiplanar conformation of the C=C-C-Ge link of atoms, may coexist with the anticlinal form. The energy differences between the synperiplanar and anticlinal forms were calculated to be 5.6-9.2 kJ/mol depending on the computational procedure. The best approximation of the equilibrium structure of the anticlinal rotamer was found in the MP2/aug-cc-pVTZ calculations. The barrier to internal rotation of the germyl group was found to be 6.561(17) kJ/mol, from measurements of the splitting of microwave transitions caused by tunneling of the germyl group through its threefold barrier.     

Synthesis and characterization of (E)- and (Z)-3-mercapto-2-propenenitrile. Microwave spectrum of the Z-isomer

The kinetically unstable compound 3-mercapto-2-propenenitrile (HS-CH=CH-C[triple bond]N) has been prepared for the first time by flash vacuum pyrolysis at 800 degrees C of 3-(tert-butylthio)-2-propenenitrile with a yield of 77% and a Z:E ratio of 8:1. Several deuterium and 15N isotopologues were also prepared using isotopically enriched compounds. Quantum chemical calculations of the structural and conformational properties of the Z- and E-isomers were undertaken at the B3LYP/6-311++G(3df,2pd), MP2/6-311++G(3df,2pd), MP2/aug-cc-pVTZ, and G3 levels of theory. These methods all predict that the Z- and the E-forms each have two "stable" planar rotameric forms with the H-S-C=C link of atoms in either a synperiplanar or an antiperiplanar conformation, with the synperiplanar form of the Z-isomer as the global minimum. The Z-isomer has been investigated by means of Stark-modulation microwave spectroscopy. Spectra attributable to the parent and three deuterium-substituted isotopologues of a single conformer were recorded and assigned. Additionally, the spectrum belonging to the first excited state of the lowest bending vibration was assigned. The ground-state rotational constants obtained by the least-squares analysis of these transitions were found to be in excellent agreement with the corresponding approximate equilibrium values generated by the MP2/aug-cc-pVTZ calculations. The preferred conformer of this molecule was found to have a synperiplanar arrangement of the H-S-C=C chain of atoms and a planar or nearly planar geometry, with a stabilizing intramolecular hydrogen bond formed between the H atom of the thiol group and pi-electron density associated with the C[triple bond]N triple bond. The possible astrochemical/astrobiological significance of this compound is discussed.     

A microwave spectroscopic and quantum chemical study of propa-1,2-dienyl selenocyanate (H(2)==C==CHSeC[triple bond]N) and cyclopropyl selenocyanate (C(3)H(5)SeC[triple bond]N)

The microwave spectra of propa-1,2-dienyl selenocyanate, H(2)C==C==CHSeC[triple bond]N, and cyclopropyl selenocyanate, C(3)H(5)SeC[triple bond]N, are reported. The spectra of the ground and two vibrationally excited states of the (80)Se isotopologue and the spectrum of the ground state of the (78)Se isotopologue were assigned for one rotameric form of H(2)C==C[double bond, length as m-dash]CHSeC[triple bond]N. This conformer is characterized by a C-C-Se-C dihedral angle of 129(5) degrees from synperiplanar (0 degrees ) and is shown to be the global minimum of H(2)C[double bond, length as m-dash]C[double bond, length as m-dash]CHSeC[triple bond]N. The spectra of the ground and of three vibrationally excited states of the (80)Se isotopologue, as well as of the ground state of the (78)Se isotopologue of one rotamer of C(3)H(5)SeC[triple bond]N were assigned. This conformer has a H-C-Se-C dihedral angle of 80(4) degrees from synperiplanar and is at least 3 kJ mol(-1) more stable than any other form of the molecule. The microwave study has been augmented by quantum chemical calculations at the B3LYP/6-311+ +G(3df,3pd) and MP2/6-311+ +G(3df,3pd) levels of theory.     

Microwave spectrum and conformational composition of 1-vinylimidazole

The microwave spectrum of 1-vinylimidazole has been investigated in the 21-80 GHz spectral region. The spectra of two conformers have been assigned. One of these forms is planar, while the other is nonplanar with the imidazole ring and the vinyl group forming an angle of 15(4)° from coplanarity. The planar form is found to be 5.7(7) kJ/mol more stable than the nonplanar rotamer by relative intensity measurements. The spectra of 10 vibrationally excited states of the planar form and one excited-state spectrum of the nonplanar form were assigned. The vibrational frequencies of several of these states were determined by relative intensity measurements. The microwave work has been augmented by quantum chemical calculations at the CCSD/cc-pVTZ, MP2/cc-pVTZ, and B3LYP/cc-pVTZ levels of theory. The B3LYP calculations predict erroneously that both forms of 1-vinylimidazole are planar, whereas the MP2 and CCSD calculations correctly predict the existence of a planar and a nonplanar conformer of this compound.     

A microwave and quantum chemical study of the conformational properties and intramolecular hydrogen bonding of 1-fluorocyclopropanecarboxylic acid

The structural and conformational properties of 1-fluorocyclopropanecarboxylic acid have been explored by microwave spectroscopy and a series of ab initio (MP2/6-311++G(d,p) level), density functional theory (B3LYP/aug-cc-pVTZ level), and G3 quantum chemical calculations. Four "stable" conformers, denoted conformers I-IV, were found in the quantum chemical calculations, three of which (conformers I -III) were predicted to be low-energy forms. Conformer I was in all the quantum chemical calculations predicted to have the lowest energy, conformer III to have the second lowest energy, and conformer II to have the third lowest energy. Conformers II and III were calculated to have relatively large dipole moments, while conformer I was predicted to have a small dipole moment. The microwave spectrum was investigated in the 18-62 GHz spectral range. The microwave spectra of conformers II and III were assigned. Conformer I was not assigned presumably because its dipole moment is comparatively small. Conformer II is stabilized by an intramolecular hydrogen bond formed between the fluorine atom and the hydrogen atom of the carboxylic acid group. Conformer III has a synperiplanar orientation for the F-C-C=O and H-O-C=O chains of atoms. Its dipole moment is: mua = 3.4(10), mub = 10.1(13), and muc = 0.0 (assumed) and mu(tot) = 10.6(14) x 10(-30) C m [3.2(4) D]. Several vibrationally excited states of the lowest torsional mode of each of II and III were also assigned. The hydrogen-bonded conformer II was found to be 2.7(2) kJ/mol less stable than III by relative intensity measurements. Absolute intensity measurements were used to show that the unassigned conformer I is the most abundant form present at a concentration of roughly 65% at room temperature. Conformer I was estimated to be ca. 5.0 kJ/mol more stable than the hydrogen-bonded rotamer (conformer II) and ca. 2.3 kJ/mol more stable than conformer III. The best agreement with the theoretical calculations is found in the MP2 calculations, which predict conformer I to be 5.1 kJ/mol more stable than III and 1.7 kJ/mol more stable than II.     

Structure and conformations of N-(fluoroformyl)imidosulfurous dichloride,FC(O)N=SCl2

The IR (gas) and Raman (liquid) spectra of FC(O)NSCl(2) demonstrate the presence of a conformational mixture in both phases. According to a gas electron diffraction study, the main conformer (94(8)%) possesses a syn-syn structure (C(O)F group synperiplanar with respect to the SCl(2) bisector and the C=O bond synperiplanar to the N=S bond). Quantum chemical calculations (HF, B3LYP and MP2 with 6-31G basis set, and MP2/6-311(2df)) predict a syn-anti structure for the second conformer. Analysis of the IR (gas) spectrum results in a contribution of 5(1)% of the minor form, corresponding to a Gibbs free energy difference DeltaG degrees = G degrees (syn-anti) - G degrees (syn-syn) = 1.75(15) kcal/mol. This value is reproduced very well by quantum chemical calculations, which include electron correlation effects (DeltaG degrees = 1.28-1.56 kcal/mol). The HF approximation overestimates this energy difference (DeltaG degrees = 3.24 kcal/mol).     

Microwave spectrum of 3-butyne-1-thiol: evidence for intramolecular S-H...pi hydrogen bonding

The microwave spectrum of 3-butyne-1-thiol has been studied by means of Stark-modulation microwave spectroscopy and quantum-chemical calculations employing the B3LYP/6-311++G(3df,2pd), MP2/aug-cc-pVTZ, MP2/6-311++G(3df,2pd), and G3 methods. Rotational transitions attributable to two conformers of this molecule were assigned. One of these conformers possesses an antiperiplanar arrangement of the atoms S-C1-C2-C3, while the other is synclinal and stabilized by the formation of an intramolecular hydrogen bond between the H-atom of the thiol group and the pi-electrons of the C[triple bond]C triple bond. The energy difference between these conformers was estimated to be 1.7(4) kJ mol(-1) by relative intensity measurements, with the hydrogen-bonded conformer being lower in energy. The spectra of five vibrationally excited states of the synclinal conformer were observed, and an assignment of these states to particular vibrational modes was made with the aid of a density functional theory (DFT) calculation of the vibrational frequencies at the B3LYP/6-311++G(3df,2pd) level of theory.     

Conformational composition of cyclopentadienylphosphine investigated by microwave spectroscopy and quantum chemical calculations

The properties of cyclopentadienylphosphine have been investigated by means of Stark-modulation microwave spectroscopy and quantum chemical calculations at the MP2/aug-cc-pVTZ, B3LYP/6-311++G(d,p), and G3 levels of theory. Spectra attributable to two rotamers denoted conformers I and II have been assigned. Conformer I has a symmetry plane (Cs symmetry) consisting of the bisectors of the cyclopentadiene ring and of the phosphino group with the lone electron pair of phosphorus pointing toward the carbon ring. In conformer II, the phosphino group is rotated approximately 120 degrees out of this plane. Relative intensity measurements have been made, and it was found that conformer II is more stable than I by 1.3(4) kJ/mol. The preferred conformer represents a borderline case of intramolecular hydrogen bond stabilization. The experimental and MP2/ aug-cc-pVTZ rotational constants differ by several percent, which indicates that the aug-cc-pVTZ basis set is not large enough to be able to predict an accurate structure for the two conformers that are close to the equilibrium geometries. 5-Substituted 1,3-cyclopentadienyl derivatives may undergo circumambulatory rearrangements. However, there is no manifestation of this effect in the microwave spectrum of cyclopentadienylphosphine.     

Preparation and properties of methoxycarbonylsulfenyl isocyanate, CH(3)OC(O)SNCO

Pure methoxycarbonylsulfenyl isocyanate, CH3OC(O)SNCO, is quantitatively prepared by the metathesis reaction between CH3OC(O)SCl and AgNCO. This novel species has been obtained in its pure form and characterized by 1H and 13C NMR, UV-vis, FTIR, and FT-Raman spectroscopy. The conformational properties of the gaseous molecule have been studied by vibrational spectroscopy and quantum chemical calculations (B3LYP and MP2 methods). The compound exhibits a conformational equilibrium at room temperature having the most stable form CS symmetry with the C=O double bond synperiplanar with respect to the S-N single bond. A second form was observed in the IR spectrum and corresponds to a conformer possessing the C-S bond antiperiplanar with respect to the N=C double bond of the isocyanate group. The structure of a single crystal of CH3OC(O)SNCO was determined by X-ray diffraction analysis at low temperature using a miniature zone melting procedure. The crystalline solid (triclinic, P1, a = 8.292(6) A, b = 9.839(7) A, c = 11.865(8) A, alpha = 67.290(2) degrees , beta = 71.5570(10) degrees , gamma = 83.4850(10) degrees and Z = 6) shows the presence of molecules having exclusively a synperiplanar conformation with respect to the three phi(CO-C=O), phi(O=C-SN), and phi(CS-N=C) dihedral angles.     

S-(fluoroformyl)O-(trifluoroacetyl) thioperoxide, FC(O)S-OC(O)CF3: gas-phase structure and conformational properties

The geometric structure and conformational properties of S-(fluoroformyl)O-(trifluoroacetyl) thioperoxide, FC(O)S-OC(O)CF3, were investigated by gas electron diffraction, matrix isolation infrared spectroscopy, and quantum chemical calculations (B3LYP with the 6-31G and aug-cc-pVTZ basis sets and MP2 with the 6-31G basis set). The experimental methods result in a mixture of two conformers with gauche conformation around the S-O bond. In the main conformer (82(7)% according to GED at 298 K), the C=O bond of the FC(O) group is oriented syn with respect to the S-O bond and phi(C-S-O-C) = 75(3) degrees . In the minor conformer (18(7)%), this C=O is oriented anti. Both conformers possess syn orientation of the C=O bond of the CF3C(O) group. The conformational properties and geometric parameters are reproduced reasonably well by the quantum chemical calculations, except for the S-O bond length, which is predicted too long by 0.04 A (B3LYP/aug-cc-pVTZ).     

Cysteine conformations revisited

Based on the B3LYP and MP2/aug-cc-pVDZ calculations, 51 cysteine conformers were found to be stable in the gas phase. The calculations were repeated for the most stable eight structures by using the aug-cc-pVTZ basis set. To estimate the influence of water on the cysteine conformation, the IEF-PCM/B3LYP/aug-cc-pVDZ calculations were carried out and showed 44 neutral and 12 zwitterion conformers to be stable in the water solution. The most stable cysteine structure in water appeared to be the zwitterionic conformer quite similar to the molecule observed in the crystal state.     

Structure and conformational properties of N-pentafluorosulfur(sulfuroxide difluoride imide) SF5N=S(O)F2: vibrational analysis, gas electron diffraction, and quantum chemical calculations

The molecular structure and conformational properties of N-pentafluorosulfur(sulfuroxide difluoride imide), SF5N=S(O)F2, have been studied by vibrational spectroscopy (IR (gas) and Raman (liquid)), by gas electron diffraction (GED), and by quantum chemical calculations (MP2 and B3LYP with (6-31G(d) and 6-311+G(2df) basis sets). According to GED, the prevailing conformer possesses a syn structure (N-SF5 bond synperiplanar with respect to the bisector of the SF2 group). Splitting of the symmetric N=S=O stretching vibration in gas and liquid spectra demonstrates the presence of a second conformer (11(5)%) with anticlinal orientation of the N-SF5 bond according to quantum chemical calculations. The geometric structure, conformational properties, and vibrational frequencies are well reproduced by quantum chemical calculations.     

Bis(trifluoroacetyl) peroxide, CF(3)C(O)OOC(O)CF(3)

Pure, highly explosive CF(3)C(O)OOC(O)CF(3) is prepared for the first time by low-temperature reaction between CF(3)C(O)Cl and Na(2)O(2). At room temperature CF(3)C(O)OOC(O)CF(3) is stable for days in the liquid or gaseous state. The melting point is -37.5 degrees C, and the boiling point is extrapolated to 44 degrees C from the vapor pressure curve log p = -1875/T + 8.92 (p/mbar, T/K). Above room temperature the first-order unimolecular decay into C(2)F(6) + CO(2) occurs with an activation energy of 129 kJ mol(-1). CF(3)C(O)OOC(O)CF(3) is a clean source for CF(3) radicals as demonstrated by matrix-isolation experiments. The pure compound is characterized by NMR, vibrational, and UV spectroscopy. The geometric structure is determined by gas electron diffraction and quantum chemical calculations (HF, B3PW91, B3LYP, and MP2 with 6-31G basis sets). The molecule possesses syn-syn conformation (both C=O bonds synperiplanar to the O-O bond) with O-O = 1.426(10) A and dihedral angle phi(C-O-O-C) = 86.5(32) degrees. The density functional calculations reproduce the experimental structure very well.     

Trifluoroacetylsulfenyl trifluoroacetate,CF(3)C(O)-S-O-C(O)CF(3), a novel compound with a symmetrically substituted S-O bond: synthesis,spectroscopic characterization,and quantum chemical calculations

The new compound trifluoroacetylsulfenyl trifluoroacetate, CF(3)C(O)SOC(O)CF(3), which possesses two identical carbonyl substituents attached to the S-O bond, has been synthesized. The IR and UV spectra of the gas phase as well as the (13)C NMR spectrum of the solution in CDCl(3) were recorded and assigned. Quantum chemical calculations were performed with the ab initio methods HF and MP2 and the density functional approach B3LYP. The 6-31G basis set was chosen in all calculations. The molecule possesses a skew structure, and according to all computational methods, the syn-syn structure (C=O bonds of both C(O)CF(3) groups synperiplanar to S-O bond) represents the most stable conformer. In agreement with the quantum chemical calculations, the presence of small amounts (< or =5%) of a second conformer (anti-syn) cannot be excluded on the basis of the IR spectrum. The calculated values for the torsional angle around the S-O bond (delta(C-S-O-C)) of the syn-syn form are smaller than 80 degrees (72-78 degrees). Comparison with theoretical results for the corresponding disulfide CF(3)C(O)SSC(O)CF(3) and peroxide CF(3)C(O)OOC(O)CF(3) indicates that the structural properties of sulfenyl compounds are more similar to those of disulfides than to those of peroxides.     

Vibrational spectra and gas phase structure of N-cyanoimidosulfurous difluoride, NCN=SF2

The vibrational spectra, IR (gas) and Raman (liquid) of N-cyanoimidosulfurous difluoride, NCN=SF2, were recorded, and the molecular structure was determined by gas electron diffraction. The spectra were assigned by comparing the vibrational frequencies with those in related molecules and with calculated (HF, MP2, B3LYP with 6-31G(d) basis sets) values, and a normal coordinate analysis was performed. The molecule possesses a syn conformation (Ctriple bondN syn with respect to the bisector of the SF2 angle). This has been rationalized by orbital interactions of the electron lone pairs of sulfur and nitrogen with the N-C and S-F bonds, respectively, which are antiperiplanar or anticlinal to these lone pairs (anomeric effects). Quantum chemical calculations with the B3LYP and MP2 methods reproduce the experimental structure reasonably well if large basis sets (6-311G(2d,f)) are used.     

A microwave spectroscopic and quantum chemical study of 3-butyne-1-selenol (HSeCH2CH2C[triple bond]CH)

The microwave spectrum of 3-butyne-1-selenol has been studied by means of Stark-modulation microwave spectroscopy and quantum chemical calculations employing the B3LYP/aug-cc-pVTZ and MP2/6-311++G(3df,3pd) methods. Rotational transitions attributable to the H80SeCH2CH2C[triple bond]CH and H78SeCH2CH2C[triple bond]CH isotopologues of two conformers of this molecule were assigned. One of these conformers possesses an antiperiplanar arrangement for the atoms Se-C-C-C, while the other is synclinal and seems to be stabilized by the formation of a weak intramolecular hydrogen bond between the hydrogen atom of the selenol group and the pi electrons of the CC triple bond. The energy difference between these conformers was determined to be 0.2(5) kJ/mol by relative intensity measurements, and the hydrogen-bonded form was slightly lower in energy.     

The structure of 1-thia-closo-decaborane(9), 1-SB(9)H(9), as determined by microwave spectroscopy and quantum chemical calculations

The microwave spectrum of 1-thia-closo-decaborane(9), 1-SB(9)H(9), has been investigated in the 12-61 GHz spectral region. The molecule has C(4v) symmetry. The spectra of five isotopomers have been assigned, and a precise substitution structure of the non-hydrogen atoms has been determined. It was found that the axial sulfur atom causes a substantial expansion of the B(4) belt adjacent to sulfur and hence leads to a significant distortion from a regular bicapped square antiprismatic structure. The experimental work has been supplemented by high-level ab initio (MP2/6-311G**) and density functional theory calculations (B3LYP/6-311G** and B3LYP/cc-pVTZ). The agreement between the substitution structure and the two DFT calculations is very good in each case. The agreement is considerably poorer for the MP2/6-311G** calculations, particularly for the sulfur-boron bond length.