Crystal structure of 1H+,10H+-1,10-diazonia-18-crown-6 diethyldithiophosphate

An x-ray diffraction structural analysis was carried out on 1H⁺,10H⁺-1,10-diazonia-18-crown-6 diethyldithiophosphate, which exists in the crystal as isolated ionic hydrogen-bonded complexes [H₂DA18C6]²⁺·2(EtO)₂PS₂ ^– with strong inter-ion N-HS hydrogen bonds. The centrosymmetric DA18C6 dication has an unusual two-cornered conformation stabilized by a pair of weak intra-ring furcated OH(N)O hydrogen bonds.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 1, pp. 190–192, January, 1991.     

Molecular and Supramolecular Structures of a Nickel(II)–Copper(II)–Nickel(II) Trinuclear Complex Containing a New Macrocyclic Oxamido Complex Ligand

The title complex, [Cu(NiL)₂(H₂O)₂](ClO₄)₂, has been obtained by self-assembly, where [NiL] is a new macrocyclic oxamido complex ligand. In the crystal, a new kind of supramolecular interaction between the carbon atoms of the oxamido group of each [NiL] complex ligand in a [Cu(NiL)₂(H₂O)₂]^{2 +} cation and the oxygen atom of one of the ester carbonyls of another [Cu(NiL)₂(H₂O)₂]^{2 +} cation, and C—HO, O—HO and interactions are observed and link the trinuclear fragments and perchlorate ions to form a 3D supramolecular network.     

An ab initio study of the structures and enthalpies of the hydrogen-bonded complexes of the acids H2O,H2S,HCN, and HCl with the anions OH−, SH−, CN−, and Cl−

Ab initio calculations at second-order Møller-Plesset perturbation theory with the 6-31 + G(d,p) basis set have been performed to determine the equilibrium structures and energies of a series of negative-ion hydrogen-bonded complexes with H₂O, H₂S, HCN, and HCl as proton donors and OH^–, SH^–, CN^–, and Cl^– as proton acceptors. The computed stabilization enthalpies of these complexes are in agreement to within the experimental error of 1 kcal mol^–1 with the gas-phase hydrogen bond enthalpies, except for HOHOH^–, in which case the difference is 1.8 kcal mol^–1. The structures of these complexes exhibit linear hydrogen bonds and directed lone pairs of electrons except for complexes with H₂O as the proton donor, in which cases the hydrogen bonds deviate slightly from linearity. All of the complexes have equilibrium structures in which the hydrogen-bonded proton is nonsymmetrically bound, although the symmetric structures of HOHOH^– and ClHCl^– are only slightly less bound than the equilibrium structures. MP2/6-31 + G(d,p) hydrogen bond energies calculated at optimized MP2/B-31 + G(d,p) and at optimized HF/6-31G(d) geometries are similar. Using HF/6-31G(d) frequencies to evaluate zero-point and thermal vibrational energies does not introduce significant error into the computed hydrogen bond enthalpies of these complexes provided that the hydrogen-bonded proton is definitely nonsymmetrically bound at both Hartree-Fock and MP2.     

Complexation between N-allylmorpholinium derivatives and copper(I) halides. Synthesis and crystal structure of π-complex {[C4H8ONH(C3H5)]+}2[Cu2Cl4]2?

Copper(I) -complex {[C₄H₈ONH(C₃H₅)]⁺}₂[Cu₂Cl₄]^2– (I) was obtained by ac electrochemical synthesis from N-allylmorpholine hydrochloride and copper(II) chloride in ethanol and structurally characterized. In structure I, copper and chlorine atoms form unique noncentrosymmetric Cu₂Cl ₄ ^2– fragments. Both crystallographically independent N-allylmorpholinium cations are involved in the -interaction and are coordinated by the copper atom through the C=C bond of the allyl group. The trigonal pyramidal environment of the Cu(1) atom is composed of three chlorine atoms and the C=C bond, while the Cu(2) atom coordinates two chlorine atoms and the C=C bond forming a planar triangle. The extremely strong N-CCl hydrogen bond (HCl 2.2 ) prevents the Cl(1) atom from acting as a bridge and favors the formation of fragments Cu₂Cl ₄ ^2– .__________Translated from Koordinatsionnaya Khimiya, Vol. 31, No. 4, 2005, pp. 306–310.Original Russian Text Copyright © 2005 by Goreshnik, Davydov, Myskiv.     

Hydrogen-bonded complexes involving HF and HCl: the effects of electron correlation and anharmonicity

Calculations on the hydrogen-bonded complexes HCNHF, H₂OHF, ClCNHCl and (CH₃)₂OHCl are reported. SCF harmonic values for the HF and HCl frequency shifts are in considerable disagreement with experiment, by as much as 100 cm^–1. Calculations at the MP2 (harmonic) level yield improved agreement with experiment, reducing discrepancies to the order of 10 cm^–1. We have also calculated all the cubic and quartic force constants for HCNHF at the SCF level, so that the anharmonic constants, x _rs can be evaluated. Although x ₁₁ (v ₁=H-F stretch) is large and negative, it is more than compensated by a positive x ₁₆ (v ₆=NH-F bend), so that the anharmonic correction to v ₁ is small and positive. The validity of these anharmonistudies is examined.     

Mutual Weakening of Hydrogen Bonds Between Hydrogen Fluoride and Proton Donors

The mutual effect of hydrogen bonds in BHF(HHal) _n complexes (Hal = F, Cl, Br, I; B = –, CH₃CN, NH₃; n = 1-3) was examined using the self-consistent field ab initio approach (6-31++G(d,p) and ECP-HW). When two and three equivalent H bonds are formed from the lone electron pairs of the fluorine atom of the HF molecule, the mutual weakening effect is 17% and 28%, respectively. The coefficients of the mutual effects of hydrogen bonds in HF(HHal)₂ and H₂O(HHal)₂ bridges are close in magnitude.     

Absorption and fluorescence of complexes of compounds of anthracene carboxylic acids with metal ions in liquid solutions

We have studied the absorption and fluorescent properties of complexes formed by compounds of anthracene-9-carboxylic acid with metal cations in dimethyl sulfoxide and ethanol. The composition and stability of these complexes has been determined. It is shown that when lanthanide ions are added (Ln³⁺) 21 complexes are formed predominantly, i.e., RCOO^– Ln^{3+ –}OOCR, while with Cd²⁺ the complexes are mainly 11, i.e., RCOO^– Cd²⁺. We have considered the principal mechanisms for the deactivation of excitation in complexes based on the RE ions (dipole-dipole energy transfer and electron transfer). The interactions were shown to be inner-sphere in character in the ion triplets, and outer-sphere in the ion pairs. The metal-ligand distance in the 21 complexes is estimated to be 0.5–0.6 nm.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 25, No. 6, pp. 673–682, November–December, 1989.In conclusion the authors wish to thank A. S. Cherkasov for synthesizing and making available the ACA and for discussing the results of the investigation.     

Hydrogen bond lengths in aqueous hydroxylammonium nitrate as a function of concentration,temperature and pressure

Qualitative and quantitative information about the interspecies distance distributions in aqueous hydroxylammonium nitrate (HAN) is obtained as a function of concentration (7 to 17M), temperature (–120 to 60°C) and pressure (0.1 to 7100 MPa) using isotopic uncoupling techniques for the O-HO and N-HO hydrogen bonds in conjunction with frequency-distance correlations.     

Voltammetric Determination of Trace Amounts of Fenitrothion on a Novel Nano-TiO2 Polymer Film Electrode

A novel nano-TiO₂ polymer modified glassy carbon (GC) electrode was developed for the determination of an organophosphorous pesticide, fenitrothion (-NO₂), in citrate buffer solution. The electrochemical behavior of fenitrothion was characterized by using cyclic voltammetry. An irreversible form, -NO₂, was transformed into a reversible redox couple (-NHOH/-NO), and it can be used to determine trace fenitrothion by square wave voltammetry. The experimental parameters, such as film thickness, pH value, accumulation potential and time were optimized. Interestingly, a cyclic voltammetric scan was observed to be more effective than a constant potential for the accumulation of fenitrothion. A linear response over a fenitrothion concentration of 2.5×10^–8 to 1.0×10^–5M was exhibited, with a detection limit of 1.0×10^–8M (S/N=3). The high sensitivity and selectivity of this film electrode was demonstrated by its practical application to the determination of trace amounts of fenitrothion in lake water and apple samples.     

Synthesis and investigation of mono- and binuclear cyano-bridged complexes of rhodium,ruthenium, and palladium

Binuclear Rh^III and Ru^II complexes of the [M¹-CN-M²]⁺BF ₄ ^– (M¹ and/or M² are (⁵-Cp)(³-C₃H₅)Rh and (⁶-C₆H₆)(³-C₃H₅)Ru) type, heteronuclear organometallic compound (⁵-Cp)(³-C₃H₅)RhCNPd(³-C₃H₅)Cl, and mononuclear Rh^III and Ru^II complexes [(³-C₃H₅)LM(MeCN)]⁺ _BF4 ^– (M = Rh, L = ⁵-Cp; M = Ru, L = ⁶-C₆H₆) were synthesized. An electrochemical study of these compounds in solutions demonstrates that the bond between the bridged CN ligand and the metal atoms is rather strong, and there is no dissociation into mononuclear fragments in solutions. The kinetics of the reaction of [(⁵-Cp)(³-C₃H₅)Rh(MeCN)]⁺ _BF4 ^– with halide ions was studied by electrochemical methods. The ligand exchange proceeds by a bimolecular dissociative-exchange mechanism.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 968–973, May, 1995.     

Double proton shifts in associates of formic acid with CH4, NH3, H2O,CH3F,NH2F,HOF, and HF molecules

The mechanisms of double synchronous proton transfer in associates of formic acid with solvent molecules of the HC(O)OHX (X = CH₄, NH₃, H₂O, or HF) and HC(O)OHFHY (Y = CH₃F, NH₂F, HOF, F₂, or HF) types have been studied by anab initio (SCF/3G) method. The calculated activation barriers of the reactions are 78.52, 17.72, 9.91, and 7.06 kcal mol^–1 in the former case and 120.1, 259.4, 228.7, 182.8, and 0.35 kcal mol^–1 in the latter case. In the latter case, simultaneously with the double transfer of protons, migration of two fluorine atoms along the chain of the associate occurs.Dedicated to Academician of the RAS N. S. Zefirov (on his 60th birthday).Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1690–1700, September, 1995.The present work was carried out with financial support from the Russian Foundation for Basic Research (Project Nos. 93-03-4972 and 93-03-18692) and the International Science Foundation (Grant ISF RNJ 000).     

Aminomethylene derivatives of azoles

4-Aminoethylidene and 4-aminomethylene derivatives of 5-imidazolone exist in the enamine form as two isomers that are stabilized by intramolecular hydrogen bonds of the NHN and NHO type. In solution the enamine with a five-membered H ring is gradually converted to the corresponding isomer with a six-membered H ring with an NHO bond. Because of steric hindrance, rotation about the carbon-carbon double bond is realized more slowly in the aminoethylidene derivatives than in the aminomethylene derivatives of 5-imidazolone.See [1] for communication XXI.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 12, pp. 1677–1679, December, 1978.     

Neutron Diffraction Analysis of H3Co2[C5H2(t-Bu)3]2, a Molecule with a Triply Hydrogen-Bridged Metal–Metal Bond: Some Comments on Structural Patterns in M(μ-H)nM Systems (n=1, 2, 3, 4)

The structure of H₃Co₂[C₅H₂(t-Bu)₃]₂ has been analyzed by low-temperature single-crystal neutron diffraction techniques, and shown to consist of two CoCp moieties with three hydride ligands bridging the central Co–Co bond. Despite a fairly extensive twinning problem, the structure could be solved and successfully refined to a final R factor of 9.2% for 2024 reflections. Average molecular parameters in the H₃Co₂ core of the molecule are as follows: Co–Co=2.275(21) Å, Co–H=1.637(16) Å, HH=2.050(20) Å, Co–H–Co=88.0(9)°, H–Co–H=77.0(7)°. Also included in this paper is a discussion on the molecular dimensions of symmetric hydride-bridged dinuclear systems (M(-H)_nM, n=1, 2, 3, 4) that have been studied to date by neutron diffraction.     

A quantum chemical study of the hydrogen bonding in the CO2⋯HF and N2O⋯HF complexes

Summary Quantum chemical ab initio calculations have been performed for the complex CO₂HF and N₂OHF. The interaction energies were computed through fourth order MBPT and were corrected for basis set superposition errors. Extended polarized basis sets were used which are constructed to give accurate values for electric moments and polarizabilities. The complex NNOHF was found to be bent, while OCOHF is linear, in agreement with experiment. The MBPT calculations give evidence for a second linear isomeric structure FHNNO, a possibility which has also been suggested by recent experimental data. The computed binding energies are: 2.5 kcal/mol for OCOHF, 2.4 kcal/mol for NNOHF, and 3.0 kcal/mol for FHNNO. At the SCF level, the FHNNO complex is less stable than NNOHF, but correlation has a large effect on the geometry and energetics of the latter complex. The NNOHF complex seems to be a system where the positive intramolecular correlation correction prevails over the negative intermolecular component.     

Crystal and molecular structure analysis of flutamide. Bifurcated helicoidal C-H ⋯ O hydrogen bonds

Crystal structure determination and semiempirical AM1 and PM3 calculations were performed on flutamide {2-methyl-N[4 nitro-3-(trifluoromethyl) phenyl] propamide}, a powerful nonsteroidal androgen antagonist. The molecule is almost planar apart from CF₃, NO₂, and CH₃ groups. The NO₂ plane makes an angle of 36.3(4) with the least-square plane of the phenyl ring. The molecules are intermolecularly linked by one N-H O and one C-H O hydrogen bonds. A bifurcated helicoidal hydrogen bond network is formed by the intermolecular C-H O hydrogen bond together with another intramolecular C-H O hydrogen bond. The calculated structures are in good agreement with the crystallographic conformations. AM1 is more accurate for predicting the intramolecular C-H O hydrogen bond while PM3 gives a better geometry for the crowded nitro group. AM1 and PM3 charges of benzenic hydrogens are used to predict the propensity of these atoms to form hydrogen bonds. The noncentrosymmetric space group of the crystal (Pna2₁), the calculated dipole moment (8.88 D), and the calculated angle between molecular dipoles and the twofold axis (–49) close to the optimal value (54.7) indicate that flutamide might be a possible candidate for nonlinear optical material.     

Synthesis and X-ray structural analysis of a unique Co-crystallization complex of [NaSal]2DB24C8 and [KSal]2DB24C8

Sodium salicylate (NaSal where Sal=2-hydroxybenzoate), when mixed with dibenzo-24-crown-8 (DB24C8) yields a bimetallic complex [NaSal]₂DB24C8 in most polar organic media, while potassium salicylate (KSal) under similar conditions shows a tendency to yield 11 or 21 complexes depending upon medium or synthesis. However, the presence of both NaSal and KSal together results in a unique mixed cation complex of composition NaKSal₂DB24C8. This product melts sharply (190-92°C) without decomposition, displays IR spectral characteristics comparable to those of [Na(Sal)]₂DB24C8, and is stable in aqueous media as shown by the detectable cation effect on the UV absorption bands of Sal and DB24C8. Single crystal X-ray analysis of NaK(Sal)₂DB24C8 reveals that the system represents a co-crystallization complex of individual (KSal)₂DB24C8 and (NaSal)₂DB24C8 molecules. The crystals are monoclinic,P2₁/c,a=19.976(2) Å,b=9.031(1) Å,c=25.541(5) Å,=122.065(9)°, ų,T=298 K,Z=2+2, CuK =1.5418 Å, and 2 (2.5°–100°). FinalR factor for the 3012 observed reflections (F>3) is 0.092. Both the Na₂- and K₂-molecules possess crystallographic centers of symmetry with one metal and its associated anion on each side of the crown ring. However, the conformations of the crowns are very different in the two molecules, with the K₂-crown being nearly planar and the Na₂-crown being quite puckered. Four oxygen atoms from the DB24C8 (KO, 2.680–2.908 Å) and three carboxyl oxygen atoms (KO, 2.472–2.708 Å) from separate salicylate ions coordinate with each potassium. Three oxygens from the crown (NaO, 2.536–2.65 Å) and three carboxyl oxygens (NaO, 2.31–2.563 Å) coordinate with each sodium. The salicylate ions lie on opposite sides and nearly perpendicular (77.2°, Na₂-molecule; 82.7° K₂-molecule) to each crown but coordinate to both of the metal ions within a molecule. The K⁺K⁺ and Na⁺Na⁺ distances in the respective molecules are 3.95 and 3.34 Å. Supplementary Data relating to this article are deposited with the British Library as Supplementary Publication No. SUP 82044 (18 pages).     

Molecular electrochemistry of hydrofullerenes C70H36—46

Electrochemistry of a mixture of hydrofullerenes C₇₀H_36—46 composed of C₇₀H₃₆, C₇₀H₃₈, C₇₀H₄₄, and C₇₀H₄₆ (50, 20, 14, and 15%, respectively) was studied by cyclic voltammetry in THF and CH₂Cl₂ in the –43—–13 °C temperature range. Two cathodic peaks, namely, one-electron reversible (E° = –3.16 V (Fc^0/+), Fc is ferrocene) and irreversible (E _p = –3.37 V (Fc^0/+)) were observed for this mixture in THF. The irreversible broad oxidation peak (E _p = 1.22 V (Fc^0/+)) was observed in CH₂Cl₂. The reversible reduction peak (E° = –3.16 V) and irreversible oxidation peak (E _p = 1.22 V) were attributed to the most stable hydrofullerene C₇₀H₃₆. The irreversible reduction (E _p = –3.37 V) and oxidation (E _p = 1.22 V) peaks were attributed to hydrofullerenes C₇₀H_44—46 with a higher degree of hydrogenation. The values of an electrochemical gap, which is an analog of the energy gap (HOMO—LUMO), are 4.38 and 4.59 V for C₇₀H₃₆ and C₇₀H_44—46, respectively, and indicate that these hydrofullerenes are sufficiently hard molecules with low reactivity in redox reactions.     

Rayleigh and Raman light scattering in hydrogen-bonded acetonitrile–water

The structure, vibrational frequencies, light scattering activities and binding energies of CH₃CNH₂O are obtained from ab initio methods. The hydrogen NH bond distance is calculated as 2.06 Å, the dipole moment as 5.77 D and our best estimate for the binding energy is 3.5 kcal mol^–1 (14.7 kJ mol^–1), after correcting for zero-point vibrations. The calculated average dipole polarizability is 39.67 au and the anisotropy is fairly large, corresponding to 21.78 au. The changes in intramolecular vibrational frequencies are analyzed. The scattering activities and depolarization of the Rayleigh and Raman light scattered are calculated. In the Raman case the depolarization due to the intense NC stretching vibration is increased by 20% after the hydrogen bond. For the OH symmetric stretch of water there is a large redshift of 75 cm^–1 and a great intensification of the Raman scattering activity by a factor of 2 and a considerable increase of the depolarization by a factor of nearly 4.From the Proceedings of the 28th Congreso de Químicos Teóricos de Expresión Latina (QUITEL 2002)     

Crystalline host-guest complexes involving carboxylic acid hosts and a dimethyl sulphoxide guest. X-ray crystal structures of two inclusion species

The host compounds 2,2-binaphthyl-3,3-dicarboxylic acid (1) and 1,13–1-terphenyl-2,4,4-tricarboxylic acid (2) have been synthesized, and crystal structures of their inclusion compounds with DMSO {1a [1·DMSO(11)];2a [2·DMSO (12)]} have been determined from single crystal X-ray diffraction data. The crystals show monoclinic symmetry withZ=4 (P2₁/n for1a andP2₁/c for2a), with the unit cell dimensionsa=11.567(1),b=10.206(1),c=17.579(1) Å,=100.50(1)° for1a, anda=14.910(1),b=6.732(1),c=26.084(1) Å,=100.41(1)° for2a. The structural models were refined toR=0.032 with 3127 reflections for1a, andR=0.035 with 3175 observations for2a, collected atT=173(1) K. Both structures comprise a characteristic molecular recognition pattern for DMSO via strong (CO)O–HO(=S) hydrogen bonds and possible C–HO contacts, the latter ones from the guest methyl groups to the carbonyl oxygen of the host carboxyl groups. In the crystals H-bonded endless chains of alternating host and guest molecules are formed, which are held together by ordinary van der Waals' forces. Additionally, host2 binds a second DMSO molecule by a single (CO)O–HO(=S) bond.Supplementary Data relating to this article have been deposited with the British Library at Boston Spa, Wetherby, West Yorkshire, U.K., as Supplementary Publication No. SUP 82186 (9 pages)     

The geometry of intermolecular interactions in some crystalline fluorine-containing organic compounds

The propensity of C-F groups to form C-F H-C interactions with C-H groups on other molecules has been analyzed. Crystal structures of molecules containing only carbon, hydrogen, and fluorine, but no oxygen, nitrogen, or other hydrogen-bond-forming elements, were chosen for an initial study in which the intermolecular interactions in crystal-structure determinations of polycyclic aromatic hydrocarbons and their analogous fluoro derivatives were analyzed. It is found that C-F H-C interactions occur, but they are weak, as judged by the intermolecular distances and the angles involved. In a study of crystal structures of molecules containing other elements in addition to carbon, hydrogen, and fluorine, it was found that when an oxygen atom is in a neighboring position on an interacting molecule, a C-O group is more likely than a C-F group to form a linear interaction to the hydrogen atom of a C-H group. Thus, in spite of the high electronegativity of the fluorine atom, a C-F group competes unfavorably with a C-O^–, C-OH, or C=O group to form a hydrogen bond to an O-H, N-H, or C-H group. It is found, however, particularly for polycyclic aromatic hydrocarbons with substituted CF₃ groups that, in the absence of other functional groups that can form stronger interactions, C-F H-C interactions may serve to align molecules and give a different crystal packing from that in the pure hydrocarbon (where fluorine is replaced by hydrogen). Thus, C-F H-X (X = C, N, O) interactions are very weak, much weaker than C=O H-X interactions, but they cannot be ignored in predictions of modes of molecular packing in complexes and in crystals.