SERRS study of [Ru(CN)<Subscript>5</Subscript>(pyS)]<Superscript>4−</Superscript> SAM and cytochrome c: A suggestion toward the heterogeneous molecular recognition

Surface-Enhanced Raman Scattering (SERS) spectra of [Ru(CN)₅(pyS)]⁴⁻ (RupyS) complex self-assembled monolayer (SAM) were obtained on gold and silver surfaces at 632.8 and 413.1 nm excitation radiations, respectively. The bands assigned to the heme iron of the cytochrome c (cyt c) metalloprotein group were observed by using the RupyS SAM on silver at 413.1 nm. The Surface-Enhanced Resonance Raman Scattering (SERRS) spectra of the RupyS SAM on silver in the cyt c solution obtained at −0.2 and +0.2 V present bands at 1,365 and 1,374 cm⁻¹ characteristic of the heme group, indicating the reduced and oxidized states of this protein, respectively. The bands observed at 1,464, 1,504, and 1,638 cm⁻¹ are used to confirm the redox state of cyt c. The presence of the oxidized and reduced bands in function of different applied potential is an evidence that the protein is interacting with the modifier. This paper is dedicated to Prof. Francisco Nart, in memoriam.     

Proton-driven self-assembled systems based on cyclam-cored dendrimers and [Ru(bpy)(CN)4]2-

1,4,8,11-tetraazacyclotetradecane (cyclam), which is one of the most extensively investigated ligands in coordination chemistry, in its protonated forms, can play the role of host toward cyanide metal complexes. We have investigated the acid-driven adducts formed in acetonitrile-dichloromethane (1:1 v/v) solution by [Ru(bpy)(CN)4](2-) with 1,4,8,11-tetrakis(naphthylmethyl)cyclam (1) and a dendrimer consisting of a cyclam core appended with 12 dimethoxybenzene and 16 naphthyl units (2). [Ru(bpy)(CN)4](2-), 1, and 2 exhibit characteristic absorption and emission bands, in distinct spectral regions, that are strongly affected by addition of acid. When a solution containing equimolar amounts of [Ru(bpy)(CN)4](2-) and 1 or 2 is titrated by trifluoroacetic acid, or when [Ru(bpy)(CN)4](2-) is titrated with (1.2H)2+ or (2.2H)2+, [[Ru(bpy)(CN)4](2-).(2H+).1] or [[Ru(bpy)(CN)4](2-).(2H+).2] adducts are formed in which the fluorescence of the naphthyl units is strongly quenched by very efficient energy transfer to the metal complex, as shown by the sensitized luminescence of the latter. The [[Ru(bpy)(CN)4]2-.(2H+).1] and [[Ru(bpy)(CN)4](2-).(2H+).2] adducts can be disrupted (i) by addition of a base (1,4-diazabicyclo[2.2.2]octane), yielding the starting species [Ru(bpy)(CN)4](2-) and 1 or 2, or (ii) by further addition of triflic acid, with formation of (1.2H)2+ or (2.2H)2+ and protonated forms of [Ru(bpy)(CN)4](2-). It is shown that upon stimulation with two chemical inputs (acid and base) both [[Ru(bpy)(CN)4](2-).(2H+).1] and [[Ru(bpy)(CN)4](2-).(2H+).2] exhibit two distinct optical outputs (a naphthalene-based and a Ru(bpy)-based emission) that behave according to an XOR and an XNOR logic, respectively.     

Assignment of the electronic spectra of [Mo(CN)(8)](4)(-) and [W(CN)(8)](4)(-) by Ab initio calculations

CASPT2 calculations are performed on the dodecahedral and square antiprismatic isomers of the [Mo(CN)(8)](4)(-) and [W(CN)(8)](4)(-) complexes. The high-energy experimental bands above 40000 cm(-)(1) are assigned to MLCT transitions. The experimental observed trend of the extinction coefficients for the molybdenum and tungsten complex is reproduced by our CASSCF oscillator strengths. All bands below 40000 cm(-)(1) can be ascribed to ligand-field transitions, although small contributions from forbidden MLCT transitions cannot be excluded. In order to account for all experimental bands in the electronic spectrum of these octacyanocomplexes, a dynamic equilibrium in solution between the two isomeric forms must be hypothesized. Spin-orbit coupling effects are found to be more important for the square antiprismatic isomers; in particular, large singlet-triplet mixings are calculated for this isomer of [W(CN)(8)](4)(-). Ligand-field and Racah parameters as well as spin-orbit coupling constants are determined on the basis of the calculated transition energies. The obtained values for these parameters support the recently proposed model for exchange interactions in magnetic clusters and networks containing pentavalent octocyanometalates of molybdenum and tungsten.     

New members of the [Ru(diimine)(CN)(4)](2-) family: structural, electrochemical and photophysical properties

A series of complexes of the type K(2)[Ru(NN)(CN)(4)] has been prepared, in which NN is a diimine ligand, and were investigated for both their structural and photophysical properties. The ligands used (and the abbreviations for the resulting complexes) are 3-(2-pyridyl)pyrazole (Ru-pypz), 2,2'-bipyrimidine (Ru-bpym), 5,5'-dimethyl-2,2'-bipyridine (Ru-dmb), 1-ethyl-2-(2-pyridyl)benzimidazole (Ru-pbe), bidentate 2,2':6',2'-terpyridine (Ru-tpy). The known complexes with = 2,2'-bipyridine (Ru-bpy) and 1,10-phenathroline (Ru-phen) were also included in this work. A series of crystallographic studies showed that the [Ru(NN)(CN)(4)](2-) complex anions form a range of elaborate coordination networks when crystallised with either K(+) or Ln(3+) cations. The K(+) salts are characterised by a combination of near-linear Ru-CN-K bridges, with the cyanides coordinating to K(+) in the usual 'end-on' mode, and unusual side-on pi-type coordination of cyanide ligands to K(+) ions. With Ln(3+) cations in contrast only Ru-CN-Ln near-linear bridges occurred, affording 1-dimensional helical or diamondoid chains, and 2-dimensional sheets constituted from linked metallamacrocyclic rings. All of the K(2)[Ru(CN)(4)] complexes show a reversible Ru(II)/Ru(III) couple (ca.+0.9 V vs. Ag/AgCl in water), the exception being Ru-tpy whose oxidation is completely irreversible. Luminescence studies in water showed the presence of (3)MLCT-based emission in all cases apart from Ru-bpym with lifetimes of tens/hundreds of nanoseconds. Time-resolved infrared studies showed that in the (3)MLCT excited state the principal C-N stretching vibration shifts to positive energy by ca. 50 cm(-1) as a consequence of the transient oxidation of the metal centre to Ru(III) and the reduction in back-bonding to the cyanide ligands; measurement of transient decay rates allowed measurements of (3)MLCT lifetimes for those complexes which could not be characterised by luminescence spectroscopy. A few complexes were also examined in different solvents (MeCN, dmf) and showed much weaker emission and shorter excited-state lifetimes in these solvents compared to water.     

Characterization of the [Ru(CN)5(pyS)] ion complex adsorbed on gold, silver and copper substrates by surface-enhanced Raman spectroscopy

The adsorption of the [Ru(CN)₅(pyS)]⁴⁻ (pyS=4-mercaptopyridine) ion complex on gold, silver and copper surfaces has been studied by surface-enhanced Raman spectroscopy (SERS). The influence of the nature of the metallic substrates in the adsorption geometry of the complex is reflected in a strong variation of the SERS spectra, particularly, the relative intensities of characteristic vibrational modes of pyS and CN ligands, which is likely to result from changes in specific chemical interactions involving both ligands and the surface. The effect of the surface modification procedure on the properties of the adsorbed monolayers has also been investigated for the gold surface. Surface modification has been performed by self-assembly or under an electrochemical potential. The spectroscopic results have shown that, according to the modification procedure, the modifier can be bound to the surface via sulfur atom or via CN nitrogen atoms. The ability to control the orientation of the adsorbed monolayer permits control over the properties of the interface, as demonstrated by the study of the electrochemistry of cytochrome-c (cyt-c) on the differently prepared surfaces. A reversible electrochemical response of the metalloprotein is only observed on the self-assembly prepared surface, where CN moieties of the surface modifier are available to interact with the protein molecule.     

Kinetics and mechanism of platinum-thallium bond formation: the binuclear [(CN)5Pt-Tl(CN)](-) and the trinuclear [(CN)5Pt-Tl-Pt(CN)5](3-) complex

Formation kinetics of the metal-metal bonded binuclear [(CN)(5)Pt-Tl(CN)](-) (1) and the trinuclear [(CN)(5)Pt-Tl-Pt(CN)(5)](3-) (2) complexes is studied, using the standard mix-and-measure spectrophotometric method. The overall reactions are Pt(CN)(4)(2-) + Tl(CN)(2)(+) <==> 1 and Pt(CN)(4)(2-) + [(CN)(5)Pt-Tl(CN)](-) <==> 2. The corresponding expressions for the pseudo-first-order rate constants are k(obs) = (k(1)[Tl(CN)(2)(+)] + k(-1))[Tl(CN)(2)(+)] (at Tl(CN)(2)(+) excess) and k(obs) = (k(2b)[Pt(CN)(4)(2-)] + k(-2b))[HCN] (at Pt(CN)(4)(2-) excess), and the computed parameters are k(1) = 1.04 +/- 0.02 M(-2) s(-1), k(-1) = k(1)/K(1) = 7 x 10(-5) M(-1) s(-1) and k(2b) = 0.45 +/- 0.04 M(-2) s(-1), K(2b) = 26 +/- 6 M(-1), k(-2b) = k(2b)/K(2b) = 0.017 M(-1) s(-1), respectively. Detailed kinetic models are proposed to rationalize the rate laws. Two important steps need to occur during the complex formation in both cases: (i) metal-metal bond formation and (ii) the coordination of the fifth cyanide to the platinum site in a nucleophilic addition. The main difference in the formation kinetics of the complexes is the nature of the cyanide donor in step ii. In the formation of [(CN)(5)Pt-Tl(CN)](-), Tl(CN)(2)(+) is the source of the cyanide ligand, while HCN is the cyanide donating agent in the formation of the trinuclear species. The combination of the results with previous data predict the following reactivity order for the nucleophilic agents: CN(-) > Tl(CN)(2)(+) > HCN.     

Cyanide-limited complexation of molybdenum(III): synthesis of octahedral [Mo(CN)(6)](3-) and cyano-bridged [Mo(2)(CN)(11)](5-)

Octahedral coordination of molybdenum(III) is achieved by limiting the amount of cyanide available upon complex formation. Reaction of Mo(CF(3)SO(3))(3) with LiCN in DMF affords Li(3)[Mo(CN)(6)] x 6DMF (1), featuring the previously unknown octahedral complex [Mo(CN)(6)](3-). The complex exhibits a room-temperature moment of mu(eff) = 3.80 mu(B), and assignment of its absorption bands leads to the ligand field parameters Delta(o) = 24800 cm(-1) and B = 247 cm(-1). Further restricting the available cyanide in a reaction between Mo(CF(3)SO(3))(3) and (Et(4)N)CN in DMF, followed by recrystallization from DMF/MeOH, yields (Et(4)N)(5)[Mo(2)(CN)(11)] x 2DMF x 2MeOH (2). The dinuclear [Mo(2)(CN)(11)](5-) complex featured therein contains two octahedrally coordinated Mo(III) centers spanned by a bridging cyanide ligand. A fit to the magnetic susceptibility data for 2, gives J = -113 cm(-1) and g = 2.33, representing the strongest antiferromagnetic coupling yet observed through a cyanide bridge. Efforts to incorporate these new complexes in magnetic Prussian blue-type solids are ongoing.     

Photoinduced electron transfer of [ Ru (bpy)_2 (4, 4'-dcbpy)]~(2 ) with electron donors

Emission quenching of [Ru(bpy)2(4, 4'-dcbpy)] (PF6)2 (1) by benzenamine,4-[2-[5-[4-[4-dimethylamino]phenyl]-4,5-di-hydro-1-phenyl-1H-pyrazol-3-yl]-ethenyl]-N,N-dimetyl (2) or 1, 5-diphenyl-3-(2-phenothiazine)-2-pyrazoline (3) was observed. Measurements of the emission decay of 1 before and after addition of 2 or 3 by single photon counting technique con-finned the observations. The emission quenching of 1 by 2 or 3 was submitted to Stern-Volmer equation. It was calculated that the quenching rate constants (kq) are 5.5 × 109(mol/L)-1s-1 for 2 and 4.0 × 109(mol/L)-1s-1 for 3, respectively. These results indicated a character of dynamic quenching process. The singlet-state of 2 or 3 was also quenched by 1. The quenching behaviors did not conform to the Stern- Volmer equation and involved both static and dynamic quenching processes. The apparent quenching rate constant (kapp) was calculated to be 3 × 109 (mol/L)-1 for the interaction of excited 2 with 1, and 1.2 × 109 (mol/L)-1 for that of excited 3 wit     

DNA interaction studies of ruthenium(II) polypyridyl complex : [Ru(dmb)2(ITAP)](ClO4)2 (ITAP = isatino [1,2-b]-1,4,8,9-tetraazatriphenylene)

A new ligand ITAP and its complex [Ru(dmb)₂(ITAP)](ClO₄)₂ (ITAP = isatino [1,2-b]-1,4,8, 9-tetraazatriphenylene, dmb = 4,4′-dimethyl-2,2′-bipyridine) have been synthesized and characterized by elemental analysis, Fast atom bombardment mass spectra, Electrospray mass spectra, and ¹H NMR. Thermal denaturation and absorption titration experiments show the complex binds to calf thymus DNA (CT-DNA) with moderate affinities. Viscosity measurements and thermal denaturation indicate that the DNA-binding mode could be intercalative interaction. The Ru(II) complex in the presence of plasmid pBR322 DNA has been found to promote the cleavage of plasmid pBR322 DNA from the supercoiled Form I to the open circular Form II upon irradiation. Mechanisms for DNA cleavage by the complex were also investigated.     

Kinetics and mechanism of formation of the platinum-thallium bond: the [(CN)(5)Pt-Tl(CN)(3)](3)(-) complex

Formation kinetics of the metal-metal bonded [(CN)(5)PtTl(CN)(3)](3)(-) complex from Pt(CN)(4)(2)(-) and Tl(CN)(4)(-) has been studied in the pH range of 5-10, using standard mix-and-measure spectrophotometric technique at pH 5-8 and stopped-flow method at pH > 8. The overall order of the reaction, Pt(CN)(4)(2)(-) + Tl(CN)(4)(-) right harpoon over left harpoon [(CN)(5)PtTl(CN)(3)](3)(-), is 2 in the slightly acidic region and 3 in the alkaline region, which means first order for the two reactants in both cases and also for CN(-) at high pH. The two-term rate law corresponds to two different pathways via the Tl(CN)(3) and Tl(CN)(4)(-) complexes in acidic and alkaline solution, respectively. The two complexes are in fast equilibrium, and their actual concentration ratio is controlled by the concentration of free cyanide ion. The following expression was derived for the pseudo-first-order rate constant of the overall reaction: k(obs) = (k(1)(a)[Tl(CN)(4)(-) + (k(1)(a)/K(f)))(1/(1 + K(p)[H(+)]))[CN(-)](free) + k(1)(b)[Tl(CN)(4)(-)] + (k(1)(b)/K(f)), where k(1)(a) and k(1)(b) are the forward rate constants for the alkaline and slightly acidic paths, K(f) is the stability constant of [(CN)(5)PtTl(CN)(3)](3)(-), and K(p) is the protonation constant of cyanide ion. k(1)(a) = 143 +/- 13 M(-)(2) s(-)(1), k(1)(b) = 0.056 +/- 0.004 M(-)(1) s(-)(1), K(f) = 250 +/- 54 M(-)(1), and log K(p) = 9.15 +/- 0.05 (I = 1 M NaClO(4), T = 298 K). Two possible mechanisms were postulated for the overall reaction in both pH regions, which include a metal-metal bond formation step and the coordination of the axial cyanide ion to the platinum center. The alternative mechanisms are different in the sequence of these steps.     

Large pressure-induced increase in luminescence intensity for the [Pd(SCN)(4)](2-) complex

Luminescence from a square planar [Pd(SCN)(4)](2-) complex shows very large increases in intensity and lifetime from ambient pressures up to 27 kbar. The band maximum shows a blue-shift of approximately 29 cm(-1)/kbar. These spectroscopic observations can be rationalized qualitatively by considering multiple effects, and they underline the strong interrelation between molecular structure, energies, and geometries of excited electronic states, and optical properties.     

Mechanistic studies on the reactions of PhS(-) or [MoS(4)](2)(-) with [M(4)(SPh)(10)](2)(-) (M = Fe or Co)

Kinetic studies, using stopped-flow spectrophotometry, on the reactions of [M(4)(SPh)(10)](2)(-) (M = Fe or Co) with PhS(-) to form [M(SPh)(4)](2)(-) are described, as are the reactions between [M(4)(SPh)(10)](2)(-) and [MoS(4)](2)(-) to form [S(2)MoS(2)Fe(SPh)(2)](2)(-) or [S(2)MoS(2)CoS(2)MoS(2)](2)(-). The kinetics of the reactions with PhS(-) are consistent with an initial associative substitution mechanism involving attack of PhS(-) at one of the tetrahedral M sites of [M(4)(SPh)(10)](2)(-) to form [M(4)(SPh)(11)](3)(-). Subsequent or concomitant cleavage of a micro-SPh ligand, at the same M, initiates a cascade of rapid reactions which result ultimately in the complete rupture of the cluster and formation of [M(SPh)(4)](2)(-). The kinetics of the reaction between [M(4)(SPh)(10)](2)(-) and [MoS(4)](2)(-) indicate an initial dissociative substitution mechanism at low concentrations of [MoS(4)](2)(-), in which rate-limiting dissociation of a terminal thiolate from [M(4)(SPh)(10)](2)(-) produces [M(4)(SPh)(9)](-) and the coordinatively unsaturated M site is rapidly attacked by a sulfido group of [MoS(4)](2)(-). It is proposed that subsequent chelation of the MoS(4) ligand results in cleavage of an M-micro-SPh bond, initiating a cascade of reactions which lead to the ultimate break-up of the cluster and formation of the products, [S(2)MoS(2)Fe(SPh)(2)](2)(-) or [S(2)MoS(2)CoS(2)MoS(2)](2)(-). With [Co(4)(SPh)(10)](2)(-), at higher concentrations of [MoS(4)](2)(-), a further substitution pathway is evident which exhibits a second order dependence on the concentration of [MoS(4)](2)(-). The mechanistic picture of cluster disruption which emerges from these studies rationalizes the "all or nothing" reactivity of [M(4)(SPh)(10)](2)(-).     

Preparation and Structures of the 2.2.2-Cryptand(1+) Salts of the [Sb(2)Se(4)](2)(-), [As(2)S(4)](2)(-), [As(10)S(3)](2)(-), and [As(4)Se(6)](2)(-) Anions

2.2.2-Cryptand(1+) salts of the [Sb(2)Se(4)](2)(-), [As(2)S(4)](2)(-), [As(10)S(3)](2)(-), and [As(4)Se(6)](2)(-) anions have been synthesized from the reduction of binary chalcogenide compounds by K in NH(3)(l) in the presence of the alkali-metal-encapsulating ligand 2.2.2-cryptand (4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]hexacosane), followed by recrystallization from CH(3)CN. The [Sb(2)Se(4)](2)(-) anion, which has crystallographically imposed symmetry 2, consists of two discrete edge-sharing SbSe(3) pyramids with terminal Se atoms cis to each other. The Sb-Se(t) bond distance is 2.443(1) ?, whereas the Sb-Se(b) distance is 2.615(1) ? (t = terminal; b = bridge). The Se(b)-Sb-Se(t) angles range from 104.78(4) to 105.18(5) degrees, whereas the Se(b)-Sb-Se(b) angles are 88.09(4) and 88.99(4) degrees. The (77)Se NMR data for this anion in solution are consistent with its X-ray structure (delta 337 and 124 ppm, 1:1 intensity, -30 degrees C, CH(3)CN/CD(3)CN). Similar to this [Sb(2)Se(4)](2)(-) anion, the [As(2)S(4)](2)(-) anion consists of two discrete edge-sharing AsS(3) pyramidal units. The As-S(t) bond distances are 2.136(7) and 2.120(7) ?, whereas the As-S(b) distances range from 2.306(7) to 2.325(7) ?. The S(b)-As-S(t) angles range from 106.2(3) to 108.2(3) degrees, and the S(b)-As-S(b) angles are 88.3(2) and 88.9(2) degrees. The [As(10)S(3)](2)(-) anion has an 11-atom As(10)S center composed of six five-membered edge-sharing rings. One of the three waist positions is occupied by a S atom, and the other two waist positions feature As atoms with exocyclic S atoms attached, making each As atom in the structure three-coordinate. The As-As bond distances range from 2.388(3) to 2.474(3) ?. The As-S(t) bond distances are 2.181(5) and 2.175(4) ?, and the As-S(b) bond distance is 2.284(6) ?. The [As(4)Se(6)](2)(-) anion features two AsSe(3) units joined by Se-Se bonds with the two exocyclic Se atoms trans to each other. The average As-Se(t) bond distance is 2.273(2) ?, whereas the As-Se(b) bond distances range from 2.357(3) to 2.462(2) ?. The Se(b)-As-Se(t) angles range from 101.52(8) to 105.95(9) degrees, and the Se(b)-As-Se(b) angles range from 91.82(7) to 102.97(9) degrees. The (77)Se NMR data for this anion in solution are consistent with its X-ray structure (delta 564 and 317 ppm, 3:1 intensity, 25 degrees C, DMF/CD(3)CN).     

Quantum-Chemical Study of the Electronic Structure of the Complex Ions [Ru(NH3)5pyz]2 + and [Ru(CN)5pyz]3 - in Solution

The hydration shell of the complex ions [Ru(NH₃)₅pyz]^{2 +} and [Ru(CN)₅pyz]^{3 -} was simulated on the basis of ab initio Hartree-Fock calculations in the supermolecular approximation, within the framework of the multicavity polarizable continuum model. In calculations of the spectral characteristics of complexes with a pronounced nonuniformity of electron density distribution, it is primarily necessary to take into account the shift of energy levels of particular fragments under the action of the electrostatic potential produced by the solvation surrounding. Consideration of the charge transfer between the complex and the outer-sphere water molecules has no significant effect on the calculated electronic spectrum; the transferred electron density is below 1e.     

Ground- and excited-state properties of the mixed-valence complex [(NH3)5Ru(III)NCRu(II)(CN)5]-

A computational study of the ground- and excited-state properties of the mixed-valence complex [(NH 3) 5Ru (III)NCRu (II)(CN) 5] (-) is presented. Employing DFT and TDDFT calculations for the complex in the gas phase and in aqueous solution, we investigate the vibrational and electronic structure of the complex in the electronic ground state as well as the character of the electronically excited states. The relevance of the various excited states for the intervalence metal-metal charge-transfer process in the complex is analyzed based on the change of charge density, spin density, and dipole moment upon photoexcitation as well as by a Mulliken-Hush analysis. Furthermore, those intramolecular modes, which are important for the charge-transfer process, are identified and characterized.     

Aqueous telluridoindate chemistry: water-soluble salts of monomeric, dimeric, and trimeric In/Te anions [InTe(4)](5-), [In(2)Te(6)](6-), and [In(3)Te(10)](11-)

Water-soluble salts of monomeric, dimeric, and/or trimeric telluridoindate anions, [K(5)(H(2)O)(2.16)][InTe(4)] (1), [K(5)(H(2)O)(5)][InTe(4)] (2), [K(6)(H(2)O)(6)][In(2)Te(6)] (3), [K(16)(H(2)O)(9.62)][InTe(4)](2)[In(2)Te(6)] (4), [K(133)(H(2)O)(24)][In(3)Te(10)](12)Te(0.5) (5), and [Rb(6)(H(2)O)(6)][In(2)Te(6)] (6), were prepared by a fusion/extraction method starting from the elements and characterized by single-crystal X-ray diffraction as well as spectroscopic methods. The compounds are the first hydrates of telluridoindate salts and thus point toward an aqueous coordination chemistry with binary In/Te ligands. Both crystallization from the extracts as mixtures of salts as well as preliminary spectroscopic investigation of the solutions indicate the presence of an equilibrium of different anionic species. Here, the indates differ from related stannates, which also show pH-dependent aggregation, but to a much lesser extent and in a better distinguishable manner. We present syntheses and crystal structures and discuss observation of the coexistence of different anions both in the solid state and in solution.