Artificial metalloprotease with active site comprising aldehyde group and Cu(II)cyclen complex

To design artificial proteases that cleave peptide backbones of a wide range of proteins at selected sites, artificial active sites comprising the Cu(II) complex of cyclen (Cu(II)Cyc) and aldehyde group were synthesized on a cross-linked polystyrene. The aldehyde group was employed as the binding site in view of its ability of reversible formation of imine bonds with epsilon-amino groups of Lys residues exposed on the surface of proteins and Cu(II)Cyc as the catalytic group for peptide hydrolysis. The two polymeric artificial metalloproteases synthesized in the present study cleaved all of the protein substrates examined (myoglobin, gamma-globulin, bovine serum albumin, human serum albumin, lysozyme, and ovalbumin), manifesting saturation kinetic behavior. At 50 degrees C and pH 9.0 or 9.5, K(m) was (1.3-22) x 10(-)(4) M, comparable to those of natural proteases, and k(cat) was (6.0-25) x 10(-)(4) s(-)(1), corresponding to half-lives of 4.6-19 min. Intermediacy of the imine complexes formed between the aldehyde group of the catalyst and the epsilon-amino groups of Lys residues of the substrates was confirmed by the trapping experiment with NaB(OAc)(3)H. MALDI-TOF MS of the proteolytic reaction mixtures revealed formation of various cleavage products. Structures of some of the cleavage products were determined by using carboxypeptidase A and trypsin. Among various cleavage sites thus identified, Gln(91)-Ser(92) and Ala(94)-Thr(95) were the major initial cleavage sites in the degradation of myoglobin by the two catalysts. The selective cleavage of Gln(91)-Ser(92) and Ala(94)-Thr(95) was attributed to general acid assistance in peptide cleavage by Tyr(146) located in proximity to the two peptide bonds. Broad substrate selectivity, high cleavage-site selectivity, and high proteolytic rate are achieved, therefore, by positioning the aldehyde group in proximity to Cu(II)Cyc attached to a cross-linked polystyrene.     

Site-specific platinum(II) cross-linking in a ribozyme active site

The function of RNA depends on its ability to adopt complex and dynamic structures, and the incorporation of site-specific cross-linking probes is a powerful method for providing distance constraints that are valuable in RNA structural biology. Here we describe a new RNA-RNA cross-linking strategy based on Pt(II) targeting of specific phosphorothioate substitutions. In this strategy cis-diammine Pt(II) complexes are kinetically recruited and anchored to a phosphorothioate substitution embedded within a structured RNA. Substitution of the remaining exchangeable Pt(II) ligand with a nucleophile supplied by a nearby RNA nucleobase results in metal-mediated cross-links that are stable during isolation. This type of cross-linking strategy was explored within the catalytic core of the Hammerhead ribozyme (HHRz). When a phosphorothioate substitution is installed at the scissile bond normally cleaved by the HHRz, Pt(II) cross-linking takes place to nucleotides G8 and G10 in the ribozyme active site. Both of these positions are predicted to be within ~8 ? of a phosphorothioate-bound Pt(II) metal center. Cross-linking depends on Mg(2+) ion concentration, reaching yields as high as 30%, with rates that indicate cation competition within the RNA three-helix junction. Cross-linking efficiency depends on accurate formation of the HHRz tertiary structure, and cross-links are not observed for RNA helices. Combined, these results show promise for using kinetically inert Pt(II) complexes as new site-specific cross-linking tools for exploring RNA structure and dynamics.     

Capture of Ni(II), Cu(I) and Z(II) by thiolate sulfurs of an N2S2Ni complex: a role for a metallothiolate ligand in the acetyl-coenzyme A synthase active site

The metal binding affinity of an (N2S2)Ni bridging metallothiolate ligand (Zn2+ < Ni2+ < Cu+) gives precedent for the observed heterogeneity in ACS/CODH.     

Oxamato-bridged trinuclear Ni(II)Cu(II)Ni(II) complexes with irregular spin state structures and a binuclear Ni(II)Cu(II) complex with an unusual supramolecular structure: crystal structure and magnetic properties

Four oxamato-bridged heterotrinuclear Ni(II)Cu(II)Ni(II) complexes of formula ([Ni(bispictn)](2)Cu(pba))(ClO(4))(2).2.5H(2)O (1), ([Ni(bispictn)](2)Cu(pbaOH))(ClO(4))(2).H(2)O (2), ([Ni(cth)](2)Cu(pba))(ClO(4))(2) (3), and ([Ni(cth)](2)Cu(opba))(ClO(4))(2).H(2)O (4) and a binuclear Ni(II)Cu(II) complex of formula [Cu(opba)Ni(cth)].CH(3)OH (5) have been synthesized and characterized by means of elemental analysis, IR, ESR, and electronic spectra, where pba = 1,3-propylenebis(oxamato), pbaOH = 2-hydroxyl-1,3-propylenebis(oxamato), opba = o-phenylenebis(oxamato), bispictn = N,N'-bis(2-pyridylmethyl)-1,3-propanediamine, and cth = rac-5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradecane. The crystal structures of 1, 3, and 5 have been determined. The structures of complexes 1 and 3 consist of trinuclear cations and perchlorate anions, and that of 5 consists of neutral binuclear molecules which are connected by hydrogen bonds and pi-pi interactions to produce a unique supramolecular "double" sheet. In the three complexes, the copper atom in a square-planar or axially elongated octahedral environment and the nickel atom in a distorted octahedral environment are bridged by the oxamato groups, with Cu.Ni separations between 5.29 and 5.33 A. The magnetic properties of all five complexes have been investigated. The chi(M)T versus T plots for 1-4 exhibit the minimum characteristic of antiferromagnetically coupled NiCuNi species with an irregular spin state structure and a spin-quartet ground state. The chi(M)T versus T plot for 5 is typical of an antiferromagnetically coupled NiCu pair with a spin-doublet ground state. The Ni(II)-Cu(II) isotropic interaction parameters for the five complexes were evaluated and are between 102 and 108 cm(-)(1) (H = -JS(Cu).S(Ni)).     

Synthesis and structural characterization of a novel mixed-valent Cu(II)Cu(I)Cu(II) triangular metallomacrocycle using an imine-based rigid ligand

A novel neutral mixed-valent Cu(I)Cu(II)(2) triangular metallomacrocycle [Cu(3)L(2)(HL)].3CH(3)OH.2H(2)O (1) was assembled by reaction of the tetradentate ligand bis(N-salicylidene-4,4'-diphenylamine), H(2)L, with a copper(II) salt. ESI-MS show peaks only corresponding to the triangular structural species, indicating the high stability of the trimer structure in solution. Magnetic study confirms that there are two Cu(II) ions and one Cu(I) ion in a discrete triangular molecule. The crystal structure of 1 reveals that the triangle is formed by three deprotonated ligands and three copper ions with a Cu-Cu separation of ca. 11.8 A. Each copper atom is coordinated by two oxygen atoms and two nitrogen atoms from two different bis-bidentate ligands in a heavily distorted tetrahedral geometry, while each ligand is bound to two metal ions in a bis-bidentate coordination mode and links the metal centers overlapping in an unprogressive manner. Strong intramolecular pi.pi interactions between the ligands are found to stabilize the constraint conformation of the triangle. Electrochemical study reveals that the mixed-valent Cu(I)Cu(II)(2) complex is the most stable state in solution condition, and the electrochemical communication between the copper ions might be explained on the basis of the through-bond interaction. UV-vis-NIR spectral measurement demonstrates the Robin-Day class II behavior of the mixed-valence compound with a weak copper-copper interaction.     

1D coordination polymers of Cu(II) and Cu(II) dimers with a dicyanomethanide ligand

Several new 1D coordination polymers have been synthesised using the anionic ligand carbamoyldicyanomethanide, C(CN)₂(CONH₂)⁻ (cdm). The polymeric complexes [Cu(cdm)₂(py)₂]·2MeOH (1), [Cu(cdm)₂(4-Etpy)₂]·2MeOH (2), [Cu(cdm)₂(3,5-Me₂pzH)₂]·2MeOH (3) and [Cu(cdm)₂(3-HOCH₂py)₂]·2MeOH (4) (py = pyridine; 3,5-Me₂pzH = 3,5-dimethylpyrazole) contain Cu(II) atoms bridged by μ₂-(N,N′) cdm ligands between equatorial and axial coordination sites. The use of monodentate co-ligands brings about polymeric products, in contrast to the use previously of chelating co-ligands which facilitate the formation of discrete products. These 1D polymeric complexes are connected by hydrogen bonding between the amide functionalities and the lattice solvent. In the structures of 3 and 4 the neutral ligands also contain hydrogen bond donor groups that supplement the amide ring motif. Two other complexes have been obtained that are polymeric chains of alkoxide-bridged Cu(II) dimers. The complexes [Cu(cdm)(MeO)(2-amp)] (5) and [Cu(cdm)(dmap)] (6) (2-amp = 2-(aminomethyl)pyridine and dmap = dimethylaminopropoxide) are remarkably similar despite the different ligands that they contain. Bridging between dimers is via μ₂-(N,O) cdm ligands, consequently altering the nature of the hydrogen bonding between adjacent chains compared to the simple polymeric species 1–3.     

Coumarin-based tripodal chemosensor for selective detection of Cu(II) ion and resultant complex as anion probe through a Cu(II) displacement approach

In this paper, a novel tripodal fluorescent receptor based on naturally occurring coumarin was synthesized and its ionic recognition properties were fully investigated by spectroscopic techniques. As revealed by the results, tripodal 1 exhibits excellent selectivity toward copper(II) by forming a 1:1 complex with triazole N as the main binding sites. And the resulted 1·Cu²⁺ complex shows recognition ability toward H₂PO₄^? by metal displacement approach. The recognition mechanism was further investigated by computer calculation.     

Simultaneous Determination of Zn(II), Cu(II), Cd(II) and Pb(II) in Soil Samples Employing an Array of Potentiometric Sensors and an Artificial Neural Network Model

A sensor array of 9 potentiometric PVC sensors has been employed for the simultaneous determination of heavy metals in soil. Sensors were firstly characterized in their response: Nernstian behavior, a concentration range from ca. 10^?6 to 10^?2 M and selectivity coefficients confirming that all sensors had cross‐response for the target ions. The mixed response system was modeled employing Artificial Neural Networks. The proposed tool was applied to the determination of Pb²⁺, Cd²⁺, Cu²⁺ and Zn²⁺ in soils at the mg kg^?1 level with satisfactory performance. Results were compared and validated against AAS reference methodology, with correlations R²>0.948 for the four heavy metals considered.     

A liquid-state copper(II) ion-selective electrode containing a complex of Cu(II) with salicylaniline

A new liquid-state ion-selective electrode based on a complex of Cu(II) with salicylaniline is described. The electrode shows linear dependence of potential on the activity of Cu(2+) in the range from 5 x 10(-6) to 0.1M, with a slope of 28.3 mV/pCu at 18 degrees . The electrode shows a better selectivity relative to Ag(I) and Hg(II) than other copper(II) ion-selective electrodes. The possibilities for using the electrode for determination of copper in the presence of interfering cations are described.     

含吡啶环大环多胺的合成及其与Cu(Ⅱ)的络合行为

本文以2,6-二溴甲基吡啶和对甲苯磺酰胺钠盐合成含吡啶环大环多胺,得到了尚未见文献报道的含四个吡啶环的三十二环胺. 2,6-二溴甲基-吡啶与甲苯磺酰胺钠盐在无水乙醇回流温度下得到1,9,17,25-四甲苯磺酰基大环多胺.用浓硫酸脱去N-甲苯磺酰基化合物的甲苯磺酰基, 生成标题大环多胺化合物. 配体与Cu(Ⅱ)的络合由紫外吸收光谱测定. 实验结果表明配体确与Cu^2^+以1:2络合成为双核络合物.     

Functionalization of mesoporous silica membrane with a Schiff base fluorophore for Cu(II) ion sensing

A Schiff base (SB) immobilized hybrid mesoporous silica membrane (SB-HMM) was prepared by immobilizing a Schiff base onto the pore surface of mesoporous silica (pore size=3.1 nm) embedded in the pores of a porous anodic alumina membrane. In contrast to the non-fluorescent analogous SB molecule in homogeneous solutions, SB-HMM exhibited intense fluorescence due to emission enhancement caused by aggregation of SB groups on the pore surface. The high quantum efficiency of the surface SB groups allows SB-HMM to function as a fluorescent sensor for Cu(II) ions in an aqueous solution with good sensitivity, selectivity and reproducibility. Under the optimal conditions described, the linear ranges of fluorescence intensity for Cu(II) are 1.2-13.8(M (R(2)=0.993) and 19.4-60 (R(2)=0.992) (M. The limit of detection for Cu(II) is 0.8 μM on basis of the definition by IUPAC (C(LOD)=3.3S(b)/m).     

A trinucleating ligand based on 1,8-naphthalenediol: synthesis, structural and magnetic properties of a linear Cu(II)Cu(II)Cu(II) complex

The extension of Robson-type ligands from dinucleating based on 2,6-diformylphenol to trinucleating based on 2,7-diformyl-1,8-naphthalenediol is demonstrated by the synthesis, structural and magnetic characterization of the first trinuclear Cu(II) complex using a 1,8-naphthalenediol derived ligand.     

Two-metal ion, Ni(II) and Cu(II), binding alpha-helical coiled coil peptide

Metalloproteins are an attractive target for de novo design. Usually, natural proteins incorporate two or more (hetero- or homo-) metal ions into their frameworks to perform their functions, but the design of multiple metal-binding sites is usually difficult to achieve. Here, we undertook the de novo engineering of heterometal-binding sites, Ni(II) and Cu(II), into a designed coiled coil structure based on an isoleucine zipper (IZ) peptide. Previously, we described two peptides, IZ-3adH and IZ-3aH. The former has two His residues and forms a triple-stranded coiled coil after binding Ni(II), Zn(II), or Cu(II). The latter has one His residue, which allowed binding with Cu(II) and Zn(II), but not with Ni(II). On the basis of these properties, we newly designed IZ(5)-2a3adH as a heterometal-binding peptide. This peptide can bind Cu(II) and Ni(II) simultaneously in the hydrophobic core of the triple-stranded coiled coil. The first metal ion binding induced the folding of the peptide into the triple-stranded coiled coil, thereby promoting the second metal ion binding. This is the first example of a peptide that can bind two different metal ions. This construction should provide valuable insights for the de novo design of metalloproteins.     

Equilibria in complexes ofN-heterocyclic molecules,Part XXIV. The reaction of nucleophiles with tris-(2,2′-bipyrimidine)iron(II) ion and its ruthenium(II) analogue

Summary The reactions of [Fe(bipym)₃]²⁺ and [Ru(bipym)₃]²⁺ with hydroxide ion in aqueous solution have been followed. The [Ru(bipym)₃]²⁺ species undergoes nucleophilic attack at the ligand to yield [Ru(bipym)₂(pyrimidine)(OH)]⁺ and [HCO₂]^– ion, involving cleavage of one pyrimidyl ring. Intermediates can be observed in the reaction of [Fe(bipym)₃]²⁺ with HO^–, N₃ ^– and SCN^–. The kinetics of the first reaction have been followed and the results are compared with those known for the reactions of [Fe(bipy)₃]²⁺, [Fe(phen)₃]²⁺ and similar compounds.Part XXIII: P. A. Williams,Transition Met. Chem., 78/84.     

Artificial hydrogenases: assembly of an H-cluster analogue within a functionalised poly(pyrrole) matrix

We show that a redox active {Fe(4)S(4)}(2+)-cubane assembly covalently bound within a cysteinyl-alkylammonium functionalised polypyrrole can be modified with a diiron dithiolate carbonyl unit to give an artificial hydrogenase H-cluster framework confined within the polymer matrix.     

Imidazolate bridged Cu(II)-Cu(II) and Cu(II)-Zn(II) complexes of a terpyridinophane azamacrocycle: a solution and solid state study

The dinuclear Cu2+ and Zn2+ as well as the mixed Cu2+-Zn2+ complexes of a 5,5'-pentaazaterpyridinophane ligand (L) are able to incorporate imidazolate (Im-) as a bridging ligand. The crystal structure of [Cu(2)L(Im)(Br)(H2O)](CF(3)SO(3))(2).3H2O (1) shows one copper coordinated by the three pyridine nitrogens of the terpyridine unit, one nitrogen of the imidazolate bridge (Im-) and one bromide anion occupying the axial position of a distorted square pyramid. The second copper atom is coordinated by the remaining imidazolate nitrogen, the three secondary nitrogens at the centre of the polyamine bridge and one water molecule that occupies the axial position. Magnetic measurements have been performed in the 2.0-300.0 K temperature range. Experimental data could be satisfactorily reproduced by using an isotropic exchange model H = -JS(1)S(2) with J = -52.3 cm(-1) and g = 2.09. Potentiometric studies have provided details of the speciation and stability constants for the mixed Cu2+-L-HIm, Zn2+-L-HIm (HIm = imidazole) and Cu2+-Zn2+-L-HIm systems. The apparent stability constant obtained at pH = 9 for the addition of imidazole to the dinuclear Cu2+ complexes is one of the highest so far reported (log K = 7.5). UV-Vis spectroscopy and paramagnetic NMR data show that imidazole coordinates to the Cu2+ ions as a bridging imidazolate ligand from pH 5 to 10. Electrochemical reduction of the Cu2+-Zn2+-L complex occurs in two successive one-electron per copper ion quasi-reversible steps. The formal potential of the Cu2+-Zn2+-L/Cu+-Zn2+-L couple is close to that of SOD. The IC50 values measured at pH 7.8 by means of the nitro blue tetrazolium method show significant SOD activity for the dinuclear Cu2+ complexes (IC50 = 2.5 microM) and moderate activity for the Cu2+-Zn2+ mixed systems (IC50 = 30 microM).     

Conductivity monitoring of inorganic anions with a Cu(II)-containing poly(3-methylthiophene) electrode in single-column ion chromatography

An amperometric detector unit equipped with a Cu(II)-containing poly(3-methylthiophene) working electrode is described for the single-column ion chromatographic detection of electroinactive inorganic anions, such as F^?, Cl^?, Br^?, NO₂^? and NO₃^?. Chromatograms obtained with this unit and with a commercial conductivity detector are almost identical with regard to peak height. Thus, an amperometric unit employing this modified electrode can be used as a conductance monitor in ion chromatographic analysis. Although the responses of this electrode seem to be conductivity related, the detection principle is probably based on a dual mechanism involving equilibria between copper ions and various anions of the system in addition to simple conductivity changes associated with the passage of analyte plugs. This explains the difference in responses observed with platinum and stainless-steel electrodes used in the same cell configuration. The detector displays a linear range of at least two orders of magnitude on a logarithmic scale.     

Luminescence properties of a di-ruthenium(II) complex with an intramolecular hydrogen bond modulated by DNA and copper(II) ion

Modulation of the luminescence properties of a di-ruthenium(II) complex [(bpy)₂Ru(BL)Ru(bpy)₂]⁴⁺ (bpy = 2,2′-bipyridine, BL = 2-hydroxyl-5-methyl-1,3-bis([1,10]phenanthroline-[5,6-d]imidazol-2-yl)benzene) by DNA and/or Cu²⁺ ion has been investigated. It is found that the ruthenium(II) complex can coordinate to the Cu²⁺ ion in both the absence and presence of DNA. Binding to DNA is through electrostatic interactions and the intramolecular hydrogen bond in the complex is located outside of the DNA. The binding constant is 1.6 × 10⁴ M⁻¹. Moreover, it is demonstrated that DNA has the ability to enhance the luminescence intensities of both the di-ruthenium(II) complex and the tri-metallic system generated by chelating with Cu²⁺. Conversely, Cu²⁺ ion can quench the luminescence of both the free ruthenium(II) complex and the DNA-bound ruthenium(II) complex.