Spiking structure of amplitude characteristics for ion trajectories in hyperboloidal mass spectrometers: the theory

We present a theory that describes a 'spiking' structure of the amplitude characteristics for trajectories of ions within a hyperboloidal mass spectrometer (HMS) discovered and reported recently. This effect, as well as modulation parametric resonance, relates directly to a fine structure of the stability diagram for a HMS. A method of extremum characteristic solutions of the Hill equation (developed in our laboratory earlier) has been used in this work. Simple expressions determined the shape of narrow dips (or reversed peaks) in the amplitude of ion oscillation versus stability parameter curves and conditions of their appearance are presented. The results that were calculated from analytical expressions are compared with those obtained from direct computations of ion trajectories in a HMS. This effect with respect to a nature of 'black holes' or 'black canyons' observed earlier in investigations of trapping efficiency and ion trapping within ion traps is discussed.     

Electron ionization mass spectra of indolenines obtained using sector and ion trap mass spectrometers

The electron impact (EI)-induced fragmentations of 18 indolenines were studied using both double-focusing and ion trap mass spectrometers. The compounds used in this study were synthesized to provide correlations of characteristic fragment ions with specific structural differences. In 2-hydroxyindolenines the hydroxy group was involved in a major fragmentation process by interacting with the ester side chain to generate an alpha,beta-unsaturated gamma-lactone structure, with concomitant loss of the corresponding alcohol. In contrast, loss of an alkyl radical, derived solely from the 2-alkoxy group, is a major primary decomposition process for 2-alkoxyindolenines. EI-MS analyses using sector and ion trap spectrometers resulted in similar fragmentation patterns.     

稳定图的测定与矩形离子阱质谱性能分析

从理论上讲, 离子阱质谱仪的性能是由阱内电场分布决定的,而电场分布又是由组成离子阱的电极几何结构和离子阱工作电压决定的. 对于矩形离子阱, 即使不考虑其几何结构的偏差, 其阱内的电场分布一般也很复杂. 在矩形离子阱内, 除四极电场外, 还包含多种成分的其他各种高阶场, 它们直接影响离子在阱内的运动轨迹和离子阱质谱的性能. 由于各种电场成分对离子阱内离子运动的影响非常复杂, 还很难从数学上给出精确的解析解, 使得目前从理论上还无法预测高阶场成分对质谱性能的影响. 本工作通过测定不同几何结构的矩形离子阱的稳定图, 从实验上比较了不同场半径, 即不同电场分布条件下的离子阱质谱性能的差别. 实验中, 通过改变离子阱的几何比例结构, 详细测定了不同结构的矩形离子阱的稳定图特征, 并与实验测得的质谱分析结果进行比较. 同时, 我们还详细介绍了矩形离子阱质谱的稳定图的测定方法, 并根据得到的不同情况下的稳定图结构分析了离子阱的质谱性能. 研究结果表明： 可以通过比较试验得到的稳定图结构来判断其离子阱质谱仪的性能如质量分辨能力等. 此外, 实验结果还发现： 对于y方向拉伸结构的矩形离子阱, 其实验绘制得到的是不完整的稳定图. 但根据稳定图边界的特点, 通过采用四极直流电压调制的方法, 可以对y方向拉伸结构的矩形离子阱的性能进行改善, 极大地提高了阱的质量分辨能力.     

Selective self-ion/molecule reactions in both external and internal source ion trap mass spectrometers

Novel results on the selective self-ion/molecule reactions (SSIMR) in both external and internal source ion trap mass spectrometers are demonstrated. Selective self-ion/molecule reaction product ions were produced between the oxygenated and nitrogenated crown ethers. For the oxygenated crown ethers, self-ion/molecule reactions lead to the formation of the protonated ions, adduct ions of fragments ([M + F](+)) and [M + H(3)O](+), while the nitrogenated crown ethers produce [M + H](+), [M + CH](+) and [M + C(2)H(3)](+) ions.     

Mapping the stability diagram of a digital ion trap (DIT) mass spectrometer varying the duty cycle of the trapping rectangular waveform

In a digital ion trap the beta(r) and beta(z) boundary lines of the stability diagram are determined experimentally using an innovative approach. In the rectangular waveform-driven digital ion trap (DIT) manipulation of the waveform duty cycle allows introduction of a precisely defined DC quadrupole component into the main trapping field. Variation of the duty cycle can be controlled at software level without any hardware modification. The data generated use peptide ions, which produce stability diagrams in good agreement with the theoretical stability diagrams previously determined by simulation studies.     

Creation and comparison of MS/MS spectral libraries using quadrupole ion trap and triple-quadrupole mass spectrometers

Searchable libraries of MS/MS spectra, obtained using liquid chromatography/tandem mass spectrometry (LC/MS/MS) with data-dependent scan mode switching on both quadrupole ion trap and triple-quadrupole mass spectrometers in conjunction with electrospray ionization, are presented. The effects on library search scores of changing the parameters for producing collision-induced dissociation (CID) on both instrument types are systematically evaluated. These observations serve as a basis for determining a universal set of conditions for building MS/MS libraries. A group of 19 closely related steroids was used. The ability to obtain library-searchable spectra at low concentrations is demonstrated for the analysis of a sample of progesterone spiked with hydroxyprogesterone impurities at 0.1 and 0.01%.     

Improved proton affinity measurements for proline and modified prolines using triple quadrupole and ion trap mass spectrometers

Proton affinity (PA) of compounds such as proline, cis-3-methylproline, cis-3-ethylproline, cis-3-isopropylproline and cis-3-isopentanylproline was determined by kinetic method with amines as the reference bases. The effective temperatures determined using ion trap and triple quadrupole mass spectrometers were found to be significantly different. In the case of the triple quadrupole instruments, the effective temperature depends significantly on the collision energy. The influence of the apparent basicity (GBapp) on the effective temperature may be used to estimate the difference in protonation entropy (DeltaDeltaS degrees) between the sample and reference compounds. In case of the ion trap mass spectrometer, the variation of the effective temperature as a function of the excitation amplitude is small, so it is difficult to account for the contribution of the entropy effects to the proton affinity value. A better estimation of the PA and DeltaDeltaS degrees values for the investigated molecules is obtained by combining the GBapp and Teff data pairs that are obtained from both the mass spectrometers.     

Building mass spectrometers and a philosophy of research

Development of the techniques of ion kinetic energy spectrometry and mass-analyzed ion kinetic energy spectrometry is described. The extension of these concepts to the method of tandem mass spectrometry for direct mixture analysis is traced, and a rationale for the construction of hybrid mass spectrometers is presented. Collisions of polyatomic ions with surfaces are discussed as an outgrowth of gaseous collisions. An attempt is made to describe a philosophy of research that guided the construction of a dozen mass spectrometers and the exploration of organic ion chemistry in as many contexts.     

Parent ion resolution in linked scans for dissociations occurring in the first field-free region of sector mass spectrometers

A frequently employed means of studying reactions of ions under high energy collisional activation conditions involves linked scanning a double-focusing mass spectrometer to detect product ions formed in the first field-free region. Experiments have demonstrated that the effective resolution of the parent ion varies during the course of a product ion scan, and this variation is attributed to the kinetic energy released during dissociation. Carefully generated Lacey-Macdonald ion intensity diagrams accurately reflect the dissociation events occurring in various regions of sector mass spectrometers. Consideration of such diagrams leads to an understanding of the noted phenomena and allows the derivation of an expression for the effective parent ion resolution. Furthermore, the approach predicts that parent ion resolution varies during constant neutral loss scans and that the relatively poor resolution (and its variation) can provide particularly misleading data. Results from product ion scans with stable isotope-labeled compounds and constant neutral loss scans with rubidium bromide and stable isotope-labeled peptide derivatives were consistent with the theoretical predictions     

Upper stability island of the quadrupole mass filter with amplitude modulation of the applied voltages

Modulation of the voltages applied to a quadrupole mass filter (QMF), either RF or RF and DC, leads to splitting of the stability region into islands of stability. The ion optical properties, such as transmission, resolving power and peak tails of the first upper stability islands have been investigated by numerical simulation of ion trajectories. The dependence of the location of this island on the amplitude of the modulation and the parameter nu = omega/Omega = Q/P where omega is modulation frequency, Omega is main angular radio frequency, and Q and P are integers, is calculated in detail. Different methods of adjusting the QMF resolution are examined. It is found that operation at the upper and lower tips of the stability islands created by amplitude modulation of the RF voltage is preferred, because of the technical simplicity of this method and a reduction of the required separation time. Amplitude modulation improves the performance of a QMF constructed with round rods, in comparison to perfect quadrupole fields. For example, with amplitude modulation of the RF, to reach a resolution of R(0.1) = 1200 requires only about 75 RF cycles of ion motion in a quadrupole field created by round rods.     

Identification of the aromatic tertiary N-oxide functionality in protonated analytes via ion/molecule reactions in mass spectrometers

A mass spectrometric method is presented for the rapid identification of compounds that contain the aromatic N-oxide functional group. This method utilizes a gas-phase ion/molecule reaction with 2-methoxypropene that yields a stable adduct for protonated aromatic tertiary N-oxides (and with one protonated nitrone) in different mass spectrometers. A variety of protonated analytes with O- or N-containing functional groups were examined to probe the selectivity of the reaction. Besides protonated aromatic tertiary N-oxides and one nitrone, only three protonated amines were found to form a stable adduct but very slowly. All the other protonated analytes, including aliphatic tertiary N-oxides, primary N-oxides, and secondary N-oxides, are unreactive toward or react predominantly by proton transfer with 2-methoxypropene.     

Fragmentation study of imatinib and characterization of new imatinib metabolites by liquid chromatography-triple-quadrupole and linear ion trap mass spectrometers

Imatinib (Gleevec) is an anticancer drug that inhibits specific protein kinases involved in cell proliferation. Whereas this drug is considered to have opened a new era, various mechanisms of resistance have been associated with imatinib relapse. Drug disposition in cancer cells including influx, efflux and drug metabolism is one mechanism that remains to be more thoroughly investigated. Moreover, recent genomic studies have revealed that some isozymes of cytochrome P450 (CYP) are possibly associated with the treatment outcome. Therefore, this research paper investigates the role of the activity of CYP1A1, 1A2, 1B1, 3A4, 4F2 and 4F3A/B on the fate of imatinib. First, a study of imatinib fragmentation was effected using electrospray triple-quadrupole and linear ion trap tandem mass spectrometers (MSn). Accurate mass determinations were performed at enhanced mass resolution for the identification of some product ions that were not predicted by two fragmentation softwares. Whereas the quadrupole MS was not designed for accurate mass measurement, delta mass errors were below 20 ppm. Then, a biotransformation study was effected in vitro. Imatinib metabolites were produced in microsomal incubations containing CYP isozymes. Imatinib and metabolites were extracted from incubation mixtures by protein precipitation, and supernatants were injected into a liquid chromatography equipment coupled with MS(n). Hydrophobic interaction liquid chromatography resolved one demethylated-, two hydroxy- and three N-oxide metabolites. Various rates of metabolite formation were observed between CYP isozymes. Liquid chromatography with deuterium oxide-containing mobile phase (H/D exchange) or incorporation of (18)O from H(2) (18)O added in the incubations was performed to elucidate the metabolite structure. Various MS(n) product scans (n < or = 4) were acquired on the linear ion trap or on the triple-quadrupole MS. Postulated structures of new metabolites are addressed.     

Fine structure of mass and charge distribution in low energy fission

Studies of finer details in mass and charge distribution fission leads to a better understanding of the fission process. Experimental determination of independent and cumulative yields using radiochemical techniques as well as mass spectrometers and fission product recoil separators form the basis of such studies. It has been established that closed shells as well as an even number of nucleons influence both mass and charge distributions. The magnitudes of these effects may be estimated from existing experimental yield data and various fission models. Using our measurements of several fission yields and those existing in the literature we have calculated even-odd proton and neutron effects for various low energy fissioning systems. Where enough data existed, direct calculations were made, whereas for other cases the Z_p-model of WAHL has been used. It is found that the even-odd proton effect is well established and pronounced in thermal neutron fission of²³⁵U and²³³U. Lesser effects were found for reactor neutron induced fission of²³²Th, thermal neutron fission of²³⁹Pu and spontaneous fission of²⁴⁵Cm and²⁴⁹Cf. No effect seems to exist in the thermal neutron fission of²⁴¹Pu and the spontaneous fission of²⁵²Cf. The even-odd neutron effect is found to be much lower than the corresponding proton effect in²³⁵U and²³³U fissions and is nonexistent in the rest of the fissioning systems.     

Sensitivity and amplitude calibration of a Fourier transform 3D quadrupole ion trap mass spectrometer

With a three-dimensional (3D) quadrupole ion trap running in a Fourier transform operating mode, the detected signal is an image of the collective motion of the confined ions. Consequently, it is assumed that the image signal is the sum of the axial trajectories of the simultaneously confined ions. The resulting frequency spectrum after Fourier transformation comprises frequency peaks at the axial secular frequencies of the confined species according to their mass/charge ratio. With a singly confined species, the maximal amplitude of the image signal is proportional to the amplitude of the secular axial frequency peak. The matrix method is employed to express the axial trajectory sampled at the confinement field period. In that case, the expression of the image signal, as well as its maximal amplitude, is calculated as a function of the trap operating conditions and initial axial positions and axial velocities of the ions. The initial position and velocity distributions are connected to the injection mode. With the steady ion flow injection mode (SIFIM) and an initial phase of the confinement field equal to kπ, the maximal amplitude of the image signal is proportional to either the sum of the initial axial positions or the number of confined ions and the mean value of the initial axial positions. By simulation, amplitude fluctuation of the frequency peak is then calculated for a number of ions ranging between some tens to some thousands of ions injected by SIFIM. The peak amplitude fluctuations induced by the fluctuations of the number of ions are seven times greater than those induced by the fluctuations of the distribution of the initial axial positions.     

Characteristics of stability boundary and frequency in nonlinear ion trap mass spectrometer

In this article, the Poincare-Lighthill-Kuo (PLK) method is used to derive an analytical expression on the stability boundary and the ion trajectory. A multipole superposition model mainly including octopole component is adopted to represent the inhomogeneities of the field. In this method, both the motional displacement and secular frequency of ions have been expanded to asymptotic series by the scale of nonlinear term ε, which represents a weak octopole field. By solving the zero and first-order approximate equations, it is found that a frequency shift exists between the ideal and nonlinear conditions. The motional frequency of ions in nonlinear ion trap depends on not only Mathieu parameters, a and q, but also the percentage of the nonlinear field and the initial amplitude of ions. In the same trap, ions have the same mass-to-charge ratio (m/z) but they have different initial amplitudes or velocities. Consequently, they will be ejected at different time through after a mass-selective instability scan. The influences on the mass resolution in quadrupole ion trap, which is coupled with positive or negative octopole fields, have been discussed respectively.     

Water CI+, a new selective and highly sensitive method for the detection of environmental components using ion trap mass spectrometers

A new method for mass spectrometric trace analysis using an ion trap detector is presented based on chemical ionization with water as a reactant. The technique has advantages over the methods commonly used with regard to selectivity and detection limit and it facilitates the detection of unstable organic compounds. Specific applications in the trace analysis of polyaromatic hydrocarbons, trinitroaromatics as well as glycols and their derivatives are described.     

Comparison of conventional and enhanced mass resolution triple-quadrupole mass spectrometers for discovery bioanalytical applications

A new triple-quadrupole mass spectrometry (MS) system with enhanced resolution capabilities has recently become available. In order to evaluate the performance of this new instrument for drug discovery assays, both the linearity and the limit of detection were compared in the positive electrospray ionization (ESI) mode with those of a conventional triple-quadrupole instrument supplied by the same manufacturer. For these studies, spiked mouse plasma standard samples were split and assayed by each instrument, which allowed for a direct comparison of the two systems. In the unit mass resolution mode, the new mass spectrometer was found to be at least ten-fold more sensitive than the conventional instrument. The sensitivity of the new mass spectrometer under the enhanced mass resolution mode was found to be even better by another factor of two. For the test compound, the linear dynamic range was found to be 0.05-5000 ng/mL for the new instrument as compared with 2.5-5000 ng/mL for the conventional mass spectrometer.     

Erratum to: Upper stability island of the quadrupole mass filter with amplitude modulation of the applied voltages

Modulation of the voltages applied to a quadrupole mass filter (QMF), either RF or RF and DC, leads to splitting of the stability region into islands of stability. The ion optical properties, such as transmission, resolving power and peak tails of the first upper stability islands have been investigated by numerical simulation of ion trajectories. The dependence of the location of this island on the amplitude of the modulation and the parameter ν=ω/Ω=Q/P where ω is modulation frequency, Ω is main angular radio frequency, and Q and P are integers, is calculated in detail. Different methods of adjusting the QMF resolution are examined. It is found that operation at the upper and lower tips of the stability islands created by amplitude modulation of the RF voltage is preferred, because of the technical simplicity of this method and a reduction of the required separation time. Amplitude modulation improves the performance of a QMF constructed with round rods, in comparison to perfect quadrupole fields. For example, with amplitude modulation of the RF, to reach a resolution of R_0.1=1200 requires only about 75 RF cycles of ion motion in a quadrupole field created by round rods.