Microstructure and dynamics of a mesogenic diol

A number of techniques have been used to elucidate the structure and dynamics of 4,4'-bis(6-hydroxyhexyloxy)biphenyl (BHHBP) in its various phases. X-ray diffraction studies indicate that the molecules pack in a crystalline phase which melts to produce a highly ordered smectic/disordered crystal mesophase. Based on molecular models and the infrared results, the all trans conformation requires a 45°-55° tilt of the molecules in the smectic layers. Infrared spectroscopic results indicate that a predominantly trans chain conformation and hydrogen bonding of the layered crystal structure persists through the mesophase. Additionally, rotational freedom about the biphenyl linkage appears to occur only in the isotropic phase. NMR data indicate that the alkoxy chain is at or near co-planarity with the respect to the phenyl ring in the crystalline phase, with reorientational motion of the biphenyl group becoming allowed in the mesophase in the form of rapid (τ_c ∼ 3 μs at 100°C) small angle liberations and, perhaps, slower (τ_c ∼ 0·5 ms at 100°C) 180° ring flips. The alkyl chains exhibit a progressive increase in mobility with distance from the biphenyl core and achieve considerable mobility at the hydroxy end of the chain despite the fact that hydrogen bonding still occurs in the mesophase.     

基于分子间侧向氢键作用的电光材料制备及性能

通过重氮耦合和酯化等反应制备了一系列侧向含有酰胺基团的偶氮苯类非线性光学生色团, 并将其与聚合物进行掺杂或通过分子间的侧向氢键作用制备了主客体型及超分子型的电光薄膜材料. 生色团的结构通过核磁共振谱(¹H NMR, NMR)、 红外光谱(IR)、 质谱(MS)和元素分析(EA)等进行了表征, 结果表明, 生色团形成了分子间的氢键作用. 通过紫外-可见(UV-Vis) 光谱研究了材料的极化性能. 相比主客体型电光薄膜材料, 由分子间侧向氢键作用形成的超分子型电光薄膜材料无需与聚合物基体材料复合, 更有利于提高材料的生色团含量、 极化取向度及稳定性. 通过Teng-Man简单反射法研究了主客体型和超分子型电光材料的二阶非线性光学性质, 结果表明, 基于分子间侧向氢键作用形成的超分子体系具有更大的电光系数.     

Hydrogen bonding in two ammonium salts of 5‐sulfosalicylic acid: ammonium 3‐carboxy‐4‐hydroxybenzenesulfonate monohydrate and triammonium 3‐carboxy‐4‐hydroxybenzenesulfonate 3‐carboxylato‐4‐hydroxybenzenesulfonate

The structures of two ammonium salts of 3‐carboxy‐4‐hydroxybenzenesulfonic acid (5‐sulfosalicylic acid, 5‐SSA) have been determined at 200 K. In the 1:1 hydrated salt, ammonium 3‐carboxy‐4‐hydroxybenzenesulfonate monohydrate, NH₄⁺·C₇H₅O₆S⁻·H₂O, (I), the 5‐SSA⁻ monoanions give two types of head‐to‐tail laterally linked cyclic hydrogen‐bonding associations, both with graph‐set R₄⁴(20). The first involves both carboxylic acid O—H...O_water and water O—H...O_sulfonate hydrogen bonds at one end, and ammonium N—H...O_sulfonate and N—H...O_carboxy hydrogen bonds at the other. The second association is centrosymmetric, with end linkages through water O—H...O_sulfonate hydrogen bonds. These conjoined units form stacks down c and are extended into a three‐dimensional framework structure through N—H...O and water O—H...O hydrogen bonds to sulfonate O‐atom acceptors. Anhydrous triammonium 3‐carboxy‐4‐hydroxybenzenesulfonate 3‐carboxylato‐4‐hydroxybenzenesulfonate, 3NH₄⁺·C₇H₄O₆S²⁻·C₇H₅O₆S⁻, (II), is unusual, having both dianionic 5‐SSA²⁻ and monoanionic 5‐SSA⁻ species. These are linked by a carboxylic acid O—H...O hydrogen bond and, together with the three ammonium cations (two on general sites and the third comprising two independent half‐cations lying on crystallographic twofold rotation axes), give a pseudo‐centrosymmetric asymmetric unit. Cation–anion hydrogen bonding within this layered unit involves a cyclic R₃³(8) association which, together with extensive peripheral N—H...O hydrogen bonding involving both sulfonate and carboxy/carboxylate acceptors, gives a three‐dimensional framework structure. This work further demonstrates the utility of the 5‐SSA⁻ monoanion for the generation of stable hydrogen‐bonded crystalline materials, and provides the structure of a dianionic 5‐SSA²⁻ species of which there are only a few examples in the crystallographic literature.     

Dual fluorescence of 4-N,N-dimethylaminopyridine. Role of hydrogen-bonded complex in the ground state

A correlation is shown between the appearance of the dual fluorescence of 4-N,N-dimethylaminopyridine (DMAP) solutions and the formation of hydrogen-bonded of complexes in the ground state. A comparative absorption study between pyridine, N,N-dimethylaniline and DMAP shows that the hydrogen-bonded complex is situated on the amino nitrogen of DMAP. A “pretwisted” conformation of DMAP in the ground state isassumed due to this hydrogen-bonded complex. Simulations by intermolecular interaction calculations and spectroscopic calculations (CNDO/s) confrim the “twisting” influence of water molecules (and/or any other hydrogen bonding) on the amine in the ground state. This “pretwisting” in the ground state by hydrogen bonding is common in many other aromatic amines. Moreover, the deforming role of hydrogen bonding in the ground state seems to be a general phenomenon in flexible aromatic molecules.     

Two polymorphs of (2‐carboxyethyl)(phenyl)phosphinic acid

Two polymorphs of (2‐carboxyethyl)(phenyl)phosphinic acid, C₉H₁₁O₄P, crystallize in the chiral P2₁2₁2₁ space group with similar unit‐cell parameters. They feature an essentially similar hydrogen‐bonding motif but differ slightly in their detailed geometric parameters. For both polymorphs, the unequivocal location of the hydroxy H atoms together with the expected differences in the P—O bond lengths establish unequivocally that both forms contain the S isomer; the protonated phosphinic acid and carboxy O atoms serve as hydrogen‐bond donors, while the second phosphinic acid O atom acts as a double hydrogen‐bond acceptor and the remaining carboxy O atom is not involved in hydrogen bonding. Thus, an undulating two‐dimensional supramolecular layer aggregate is formed based on an R₄³(20) ring unit. Such polymorphism derives from the rotation of the C—C single bonds between the two hydrogen‐bond‐involved carboxy and phosphinic acid moieties.     

Amide, urea and thiourea-containing triphenylene derivatives: influence of H-bonding on mesomorphic properties

The synthesis and thermotropic properties are reported for a series of hexaalkoxytriphenylenes that contain an amide, urea or thiourea group in one of their alkoxy tails. The intermolecular hydrogen bonding abilities of these molecules have a disturbing influence on the formation and stability of the columnar liquid crystalline phases. The stronger the hydrogen bonding the more the liquid crystallinity is suppressed, probably due to disturbance of the π-π stacking of the triphenylene discs. As a direct result, urea- and amide-containing triphenylene derivatives are not liquid crystalline, but several thiourea derivatives show hexagonal columnar mesophases.     

K(VO)(SeO(3))(2)H: A New One-Dimensional Compound with Strong Hydrogen Bonding

The hydrothermal synthesis, X-ray single crystal structure, magnetic properties, and solid state NMR and infrared spectroscopic data of a new compound, K(VO)(SeO(3))(2)H, are described. K(VO)(SeO(3))(2)H crystallizes in the monoclinic space group P2(1)/m (No. 11), with a = 7.8659(7) ?, b = 10.4298(7) ?, c = 4.0872(7) ?, beta = 96.45(1) degrees, and Z = 4. The structure is described as parallel linear strands made of repeating [(VO)(SeO(3))(2)](2-) units. The chains are held together through hydrogen bondings between selenite oxygens, weak V=O.V=O bonds, and ionic bonds to the interchain K(+) ions. The hydrogen bonding in this compound shows many characteristics of the strong hydrogen bonding with a short O-O distance of 2.459(6) ?, a large down field shift of the proton NMR signal of 19 +/- 1 ppm, and a low O-H absorption frequency. However, the exact position of the hydrogen atom and, thus, the nature of the hydrogen bonding in this compound is unclear. Possible models for the hydrogen atom positions are discussed based on experimental and literature data. The magnetic susceptibility data show an antiferromagnetic coupling below 19 K. The curve can be explained with a 1-D Heisenberg model for S = (1)/(2) with J/k = 13.8 K and g = 1.97.     

Hydrothermal Synthesis,Crystal Structures and Effect of Non Bonding Interactions in Crystal Packing of Two Mixed‐Ligand Metal Complexes with Glycolato and 2,2′‐Dipiridylamine and with Benzilato and Imidazole

Two new mixed‐ligand complexes [Fe(HG)₂(dipyam)] ( 1 ) (HG = glycolato and dipyam = 2,2′‐dipyridylamine) and [Cu(HB)₂(im)₂]·2H₂O ( 2 ) (HB = benzilato and im = imidazole) have been hydrothermally synthesized and structurally characterised by X‐ray diffraction. In both cases the metallic centre is in an octahedral environment, strongly distorted in 2 (4+2 coordination). The α‐hydroxycarboxylato ligands (glycolato or benzilato) present different coordinative behaviour, bidentade chelate through the hydroxyl oxygen and one carboxy oxygen in 1 and through the two oxygen atoms of the carboxylate group in 2 . The complexes are extended into 2D frameworks through hydrogen bonding and π···π or C‐H···π interactions. The complexes were also characterized by elemental analysis, FT‐IR and UV‐vis spectroscopy and room temperature magnetic measurements.     

Interplay between cation-π and hydrogen bonding interactions

The interplay between two important non-covalent interactions involving aromatic rings is studied by means of ab initio calculations (MP2/6-31++G^**). They demonstrate that synergetic effects are present in complexes where cation-π and hydrogen bonding interactions coexist. These synergetic effects have been studied using the ‘atoms-in-molecules’ theory and the molecular interaction potential with polarization partition scheme.     

Hydrogen bonding Part 20. Infrared study of the high temperature β-form of choline chloride

Infrared spectral studies of β-choline chloride at 95°C clearly demonstrate the presence of O---H … Cl hydrogen bonding. This observation contradicts an earlier conclusion, based on X-ray structural studies, that such hydrogen bonding could not occur in this high-temperature form of choline chloride. A moderate reinterpretation of the X-ray data may reconcile these contradictory conclusions. Unlike -choline chloride, β-choline chloride does not show C---H … Cl hydrogen bonding. It is possible that loss of C---H … Cl hydrogen bonding is a factor in the marked difference in radiation sensitivity of the - and β-forms.     

A pseudo‐quadruple hydrogen‐bonding motif consisting of six N—H⋯O hydrogen bonds in trimethoprim formate

The title compound, trimethoprim (TMP) formate [systematic name: 2,4‐di­amino‐5‐(3,4,5‐tri­methoxy­benzyl)­pyrimidin‐1‐ium formate], C₁₄H₁₉N₄O₃⁺·CHO₂^?, reveals a pseudo‐quadruple hydrogen‐bonding motif consisting of six N—H?O hydrogen bonds involving two unpaired TMP cations and two formate anions which are symmetrically disposed. The hydrogen‐bonding motif is strikingly comparable with that observed in other TMP salts where the amino­pyrimidine moieties of the TMP cations are centrosymmetrically paired. These conserved hydrogen‐bonding motifs may serve as robust synthons in crystal engineering and design. The characteristic pseudo‐quadruple hydrogen‐bonding motif and other intermolecular hydrogen bonds operating in the crystal form a two‐dimensional supramolecular sheet structure.     

The presentation of an approach for estimating the intramolecular hydrogen bond strength in conformational study of β-Aminoacrolein

All the plausible conformations of β-aminoacrolein (AMAC) have been investigated by the Bekes-Lee-Yang-Parr (B3LYP) nonlocal density functional with extended 6-311++G** basis set for studying the stability order of conformers and the various possibilities of intramolecular hydrogen bonding formation. In general the ketoamine (KA) conformers of AMAC, by mean average, are more stable than the corresponding enolimine (EI) and ketoimine (KI) analogues and this stability is mainly due to the π-electron resonance in these conformers that established by NH2 functional group. The contribution of resonance to the stability of chelated KA conformers is about 75.6 kJ/mol, which is greater than that of the hydrogen bond energy (E_HB=35.0 kJ/mol). The relative decreasing order of the various hydrogen bond energies was found to be: O–HN_imine(strong)>N_amine-HO_keto (normal)>N_imine-HO_hydroxyl (weak) > N_imine-HO_keto (weak). Hydrogen bond energies for all systems were obtained from the method that we called related rotamers method (RRM). The topological properties of the electron density contributions for various type of intramolecular hydrogen bond have been analyzed in term of the Bader theory of atoms in molecules (AIM). The results of these calculations support the previous calculations, which obtained by the related rotamer methods.     

Intramolecular hydrogen bonding and calixarene-like structures in p-cresol/formaldehyde resins

The nature of the strong hydrogen bonds found in p-cresol/formaldehyde (PCF) resins, compared to ordinary phenolic compounds, is studied. The evidence from FTIR spectroscopy indicates that this strong interaction is due to intramolecular hydrogen bonding from “calixarene-like” structures. The formation of this structure in PCF is enabled by its “linear” (all-ortho-linkage) structure, which is not present in branched resins. Additionally, a transition is observed at around 175 to 200°C where the intramolecular hydrogen bonded structure is lost. This structure cannot be recovered upon cooling or annealing due to restrictions on conformational rotations that are coupled to a new pattern of intermolecular hydrogen bonding. However, the structure is reformed by dissolving the resin in solution and casting new films.     

Conformational features of calix[4]arenes with alkali metal cations: A quantum chemical investigation with density functional theory

A variety of conformations for three model calix[4]arenes with 8 or 12 OH groups have been investigated by calculations at density functional (RI-BP86) and RI-MP2 level of approximation. The calixarenes form stable complexes with the alkali metal cations of lithium up to caesium. For the investigations all-valence electron basis sets as well as various effective core potentials were probed. The stabilities of complexes were analysed in comparison with the corresponding benzene complexes, M⁺·C₆H₆. The formation of the calixarene metal complexes is considered in two steps, (a) in a distortion from the equilibrium conformation of the free calixarenes and (b) subsequent complexation. The distortion energies are small for the ‘crown’ and larger for the ‘boat’ conformations. On the other hand the latter are more stabilized by significant interaction energy of the cation with two adjacent π-systems of the aromatic rings. As a result, these two conformations are of similar stabilities for K⁺ to Cs⁺ complexes with resorc[4]arenes, with a slight advantage for the ‘boat’ structure. The most stable conformation for the coordination products of these cations with the calix[4]arene with 12 OH groups is a slightly flattened ‘crown’ that is derived by maximum hydrogen bonding of the OH-groups and the most effective cation-π interactions. Special cases are complexes of Li⁺ and Na⁺ which in most instances prefer the coordination on the oxygen atoms of the upper rim of the calixarene cavities and thus form ‘boat’-like structures.     

Synthesis, molecular and crystal structure of bis(triethanolamine)manganese(II) saccharinate: a seven-coordinate manganese complex with tri- and tetradentate triethanolamine ligands

The synthesis, molecular and crystal structure of bis(triethanolamine)Mn(II) saccharinate, [Mn(tea)₂](sac)₂ are reported. The configuration of the tea ligands results in an unusual example of coordination number seven for the Mn(II) ion. The two triethanolamine (tea) ligands coordinate to the Mn(II) ion forming a monocapped trigonal prism geometry, in which one of the tea ligands behaves as a tridentate ligand, while the other one acts as a tetradentate donor. The free and coordinated hydroxyl hydrogens of the tea ligands are involved in hydrogen bonding with the amine nitrogen, carbonyl and sulfonyl oxygens of the neighbouring sac ions to form a three-dimensional infinite network. A weak π–π interaction between the phenyl rings of the sac ions also occurs.     

On the relative strengths of amide…amide and amide…water hydrogen bonds

We have performed Hayes—Stone intermolecular perturbation theory (IMPT) calculations on amide…water and amide…amide complexes in order to estimate the change ΔW in intermolecular interaction energy associated with the hydrogen bond exchange process amide(NH)…water+water…(OC)amideamide(NH)…(OC)amide+water…water. ΔW is found to be small and varies by almost 5 kJ/mol and in sign for the amides formamide, acetamide, N-methyl formamide and N-methyl acetamide. The main variations in the amide hydrogen bond energies occur in the electrostatic and exchange-repulsion contributions. This reflects the variation in the charge distributions of the hydrogen bonding groups between the different amides. Thus, we cannot quantify an isolated hydrogen bond strength with any great accuracy, and care must be used in extrapolating model potentials based on small model systems to peptides and proteins.     

(Thio)Amidoindoles and (Thio)Amidobenzimidazoles: An Investigation of Their Hydrogen‐Bonding and Organocatalytic Properties in the Ring‐Opening Polymerization of Lactide

The mechanism of the ring‐opening polymerization (ROP) of lactide catalyzed by two partner hydrogen‐bonding organocatalysts was explored. New amidoindoles 4 a , c , thioamidoindoles 4 b , d , amidobenzimidazoles 5 a , c , and thioamidobenzimidazoles 5 b , c were synthesized and used as activators of the monomer. In the solid state and in solution, compounds 4 and 5 showed a propensity for self‐association, which was evaluated. (Thio)Amides 4 and 5 do catalyze the ROP of lactide in the presence of a cocatalyst, tertiary amine 3 a or 3 b , which activates the growing polymer chain through hydrogen‐bonding. Reactions were conducted in 2–24 h at 20 °C; conversion yields ranged between 22 and 100 %. A detailed study of the intermolecular interactions undertaken between the participating species showed that, as expected, simultaneous weak hydrogen bonds do exist to activate the reagents. Moreover, interactions have been revealed between the partner catalysts 4 / 5 + 3 . ROP catalyzed by these partner activators is thus governed by multiple dynamic equilibria. The latter should be judiciously adjusted to fine‐tune the catalytic properties of (thio)amides and organocatalysts, more generally.     

State-selected dissociation of cis-HONO(Ã A″): Effect of intramolecular hydrogen bonding

The influence of intramolecular hydrogen bonding on the photodissociation of cis-HONO is probed via measurements on the OH fragment ejected by specific ---N=0 stretching (ν₂) vibrational levels of the à state. Due to hydrogen bonding between the H atom and the terminal oxygen, the ν₂ motion is coupled to the in-plane HON bend ν₃. Since the latter evolves into fragment rotation, the rotational energy and anisotropy of the OH product increases with the number of ν₂ quanta. By contrast, ν₂ in trans HONO is a relatively isolated ---N=O vibration and thus does not influence the OH photofragment's properties.     

Water effect on the excited-state decay paths of singlet excited cytosine

Two low-energy deactivation paths for singlet excited cytosine, one through a S₁/S₀ conical intersection of the ethylene type, and one through a conical intersection that involves the (n_N, π^*) state, are calculated in the presence of water. Water is included explicitly for several cytosine monohydrates, and as a bulk solvent, and the calculations are carried out at the complete active space self-consistent field (CASSCF) and complete active space second order perturbation (CASPT2) levels of theory. The effect of water on the lowest-energy path through the ethylenic conical intersection is a lowering of the energy barrier. This is explained by stabilization of the excited state, which has zwitterionic character in the vicinity of the conical intersection due to its similarity with the conical intersection of ethylene. In contrast to this, the path that involves the (n_N, π^*) state is destabilized by hydrogen bonding, although the bulk solvent effect reduces the destabilization. Overall, this path should remain energetically accessible.