Purification and characterization of a glycoside hydrolase family 43 beta-xylosidase from Geobacillus thermoleovorans IT-08

The gene encoding a glycoside hydrolase family 43 beta-xylosidase (GbtXyl43A) from the thermophilic bacterium Geobacillus thermoleovorans strain IT-08 was synthesized and cloned with a C-terminal His-tag into a pET29b expression vector. The recombinant gene product termed GbtXyl43A was expressed in Escherichia coli and purified to apparent homogeneity. Michaelis-Menten kinetic parameters were obtained for the artificial substrates p-nitrophenyl-beta-D: -xylopyranose (4NPX) and p-nitrophenyl-alpha-L: -arabinofuranose (4NPA), and it was found that the ratio k (cat)/K (m) 4NPA/k (cat)/K (m) 4NPX was approximately 7, indicting greater catalytic efficiency for 4NP hydrolysis from the arabinofuranose aglycon moiety. Substrate inhibition was observed for the substrates 4-methylumbelliferyl xylopyranoside (muX) and the arabinofuranoside cogener (muA), and the ratio k (cat)/K (m) muA/k (cat)/K (m) muX was approximately 5. The enzyme was competitively inhibited by monosaccharides, with an arabinose K (i) of 6.8 +/- 0.62 mM and xylose K (i) of 76 +/- 8.5 mM. The pH maxima was 5.0, and the enzyme was not thermally stable above 54 degrees C, with a t (1/2) of 35 min at 57.5 degrees C. GbtXyl43A showed a broad substrate specificity for hydrolysis of xylooligosaccharides up to the highest degree of polymerization tested (xylopentaose), and also released xylose from birch and beechwood arabinoxylan.     

The first dinuclear copper(II) and zinc(II) complexes containing novel Bis-TACN: syntheses, structures, and DNA cleavage activities

Two novel binuclear complexes [Cu(2)(L)].(ClO(4))(2) (1) and [Zn(2)(L)].(ClO(4))(2) (2) were synthesized and crystallographically characterized {L = 1(4),5(4)-dimethyl-1(2),5(2)-dihydroxy-1(1,3),5(1,3)-dibenzene-3(1,4),7(1,4)-di-1,4,7-triazacyclononane}. The cation [Cu(2)(L)](2+) structure of 1 is similar to that of [Zn(2)(L)](2+) of 2. The central ion is bridged by the di-phenoxo of L and lies in a close to perfect square pyramidal geometry. 1 and 2 crystallize in the triclinic space group P1. The two complexes effectively promote the cleavage of plasmid DNA in the presence of activating agents at physiological pH and temperature. The pseudo-Michaelis-Menten kinetic parameters k(cat) = 1.61 h(-1), K(m) = 1.35 x 10(-5) M for complex 1 in the presence of mercaptoethanol; k(cat) = 2.48 h(-1), K(m) = 5.5 x 10(-5)M for complex 2 in the presence of hydrogen peroxide were obtained. The mechanism of plasmid DNA cleavage was studied by adding standard radical scavengers. DNA cleavage reaction by the binuclear Zn(II)/H(2)O(2) system is a hydrolytic mechanism.     

Quantitative analysis of the effect of salt concentration on enzymatic catalysis.

Like pH, salt concentration can have a dramatic effect on enzymatic catalysis. Here, a general equation is derived for the quantitative analysis of salt-rate profiles: k(cat)/K(M) = (k(cat)/K(M))(MAX)/[1+([Na+]/K[Na+])(n')], where (k(cat)/K(M))(MAX) is the physical limit of k(cat)/K(M), K(Na+) is the salt concentration at which k(cat)/K(M) = (k(cat)/K(M))(MAX)/2, and -n' is the slope of the linear region in a plot of log(k(cat)/K(M)) versus log [Na+]. The value of n' is of special utility, as it reflects the contribution of Coulombic interactions to the uniform binding of the bound states. This equation was used to analyze salt effects on catalysis by ribonuclease A (RNase A), which is a cationic enzyme that catalyzes the cleavage of an anionic substrate, RNA, with k(cat)/K(M) values that can exceed 10(9) M(-1) s(-1). Lys7, Arg10, and Lys66 comprise enzymic subsites that are remote from the active site. Replacing Lys7, Arg10, and Lys66 with alanine decreases the charge on the enzyme as well as the value of n'. Likewise, decreasing the number of phosphoryl groups in the substrate decreases the value of n'. Replacing Lys41, a key active-site residue, with arginine creates a catalyst that is limited by the chemical conversion of substrate to product. This change increases the value of n', as expected for a catalyst that is more sensitive to changes in the binding of the chemical transition state. Hence, the quantitative analysis of salt-rate profiles can provide valuable insight into the role of Coulombic interactions in enzymatic catalysis.     

Interaction of 2-chloronaphthalene with high carbon iron filings (HCIF): adsorption, dehalogenation and mass transfer limitations

Interaction of 2-chloronaphthalene (2-CN) with high-carbon iron filings (HCIF) was studied in anaerobic batch systems, both under well-mixed and poorly-mixed conditions. In well-mixed conditions, partitioning of 2-CN between solid and aqueous phases was fast, resulting in rapid attainment of equilibrium. Equilibrium partitioning could be described by a Freundlich isotherm, C(s)=K x [C(a)](m), where C(s) (micromoles g(-1) iron) and C(a) (micromoles L(-1)) were the solid and aqueous phase 2-CN concentrations, respectively. Isotherm parameters, m and K were determined to be 0.76 and 5.6 x 10(-2) (micromole g(-1) iron)/(micromole L(-1)), respectively. Sorption (k(2)) and desorption (k(3)) rate constants were determined to be 5.60 x 10(-1) h(-1) g(-1) iron L and 10 h(-1), respectively. Reductive dehalogenation of aqueous phase 2-CN occurred concurrently but at a slower rate, and could be described by the expression (dC(T)//dt)= -k(1) x M x (C(a))(N), where C(T) (micromoles L(-1)) was the total 2-CN concentration and M (g iron L(-1)) the concentration of HCIF. The values of k(1) and N were determined to be 1.09 x 10(-2) h(-1) g(-1) iron L and 1.647, respectively. In poorly mixed conditions, adsorption (k(2)) and desorption (k(3)) rate constants were 3.92 x 10(-5) h(-1) g(-1) iron L and 7 x 10(-4) h(-1), respectively, i.e., several orders of magnitude less than in well-mixed systems. The dehalogenation rate parameters, k(1) and N were determined to be 2.22 x 10(-4) h(-1) g(-1) iron L and 0.986, respectively, suggesting slower dehalogenation. These results highlight how mass-transfer limitations during the interaction between HCIF and 2-CN in poorly mixed systems, such as permeable reactive barriers (PRBs), can potentially impact the dehalogenation process.     

Kinetics and mechanism of methane, methanol, and dimethyl ether C-H activation with electrophilic platinum complexes

The relative rates of C-H activation of methane, methanol, and dimethyl ether by [(N-N)PtMe(TFE-d(3))](+) ((N-N) = ArN=C(Me)-C(Me)=NAr; Ar = 3,5-di-tert-butylphenyl, TFE-d(3) = CF(3)CD(2)OD) (2(TFE)) were determined. Methane activation kinetics were conducted by reacting 2(TFE)-(13)C with 300-1000 psi of methane in single-crystal sapphire NMR tubes; clean second-order behavior was obtained (k = 1.6 +/- 0.4 x 10(-3) M(-1) s(-1) at 330 K; k = 2.7 +/- 0.2 x 10(-4) M(-1) s(-1) at 313 K). Addition of methanol to solutions of 2(TFE) rapidly establishes equilibrium between methanol (2(MeOD)) and trifluoroethanol (2(TFE)) adducts, with methanol binding preferentially (K(eq) = 0.0042 +/- 0.0006). C-H activation gives [(N-N)Pt(CH(2)OD)(MeOD)](+) (4), which is unstable and reacts with [(RO)B(C(6)F(5))(3)](-) to generate a pentafluorophenyl platinum complex. Analysis of kinetics data for reaction of 2 with methanol yields k = 2.0 +/- 0.2 x 10(-3) M(-1) s(-1) at 330 K, with a small kinetic isotope effect (k(H)/k(D) = 1.4 +/- 0.1). Reaction of dimethyl ether with 2(TFE) proceeds similarly (K(eq) = 0.023 +/- 0.002, 313 K; k = 5.5 +/- 0.5 x 10(-4) M(-1) s(-1), k(H)/k(D) = 1.5 +/- 0.1); the product obtained is a novel bis(alkylidene)-bridged platinum dimer, [(diimine)Pt(mu-CH(2))(mu-(CH(OCH(3)))Pt(diimine)](2+) (5). Displacement of TFE by a C-H bond appears to be the rate-determining step for all three substrates; comparison of the second-order rate constants (k((methane))/k((methanol)) = 1/1.3, 330 K; k((methane))/k((dimethy)(l e)(ther)) = 1/2.0, 313 K) shows that this step is relatively unselective for the C-H bonds of methane, methanol, or dimethyl ether. This low selectivity agrees with previous estimates for oxidations with aqueous tetrachloroplatinate(II)/hexachloroplatinate(IV), suggesting a similar rate-determining step for those reactions.     

Proton inventory studies of alpha-thrombin-catalyzed reactions of substrates with selected P and P' sites

Deuterium kinetic solvent isotope effects for the human alpha-thrombin-catalyzed hydrolysis of (1) substrates with selected P(1)-P(3) sites, Z-Pro-Arg-7-amido-4-methylcoumarin (7-AMC), N-t-Boc-Val-Pro-Arg-7-AMC, Bz-Phe-Val-Arg-4-nitroanilide (pNA), and H-D-Phe-L-Pip-Arg-pNA, are (DOD)k(cat) = (2.8-3.3) +/- 0.1 and (DOD)(k(cat)/K(m)) = (0.8-2.1) +/- 0.1 and (2) internally fluorescence-quenched substrates (a) (AB)Val-Phe-Pro-Arg-Ser-Phe-Arg-Leu-Lys(DNP)-Asp-OH, an optimal sequence, and (b) (AB)Val-Ser-Pro-Arg-Ser-Phe-Gln-Lys(DNP)-Asp-OH, recognition sequence for factor VIII, are (DOD)k(cat) = 2.2 +/- 0.2 and (DOD)(k(cat)/K(m)) = (0.8-0.9) +/- 0.1, at the pL (L = H, D) maximum, 8.4-9.0, and (25.0-26.0) +/- 0.1 degrees C. The most plausible models fitting the partial isotope effect (proton inventory) data have been selected on the basis of lowest values of the reduced chi squared and consistency of fractionation factors at all substrate concentrations, assuming rate-determining acylation. The data for Z-Pro-Arg-7-AMC are consistent with a single-proton bridge at the transition state phi(TS) = 0.39 +/- 0.05 and components for solvent reorganization phi(S) = 0.8 +/- 0.1 and phi(S) = 1.22 for k(cat) and k(cat)/K(m), respectively. The data for tripeptide amides fit bowl-shaped curves; an example is N-t-Boc-Val-Pro-Arg-7-AMC: phi(TS)(1) = phi(TS)(2) = 0.57 +/- 0.01 and phi(S) = 1 for k(cat) and 1.6 +/- 0.1 for k(cat)/K(m). Proton inventories for the nonapeptide (2b) are linear. The data for k(cat) for H-D-Phe-L-Pip-Arg-pNA and the decapeptide (2a) are most consistent with two identical fractionation factors for catalytic proton bridging, phi(TS)(1) = phi(TS)(2) = 0.68 +/- 0.02 and a large inverse component (phi(S) = 3.1 +/- 0.5) for the latter, indicative of substantial solvent reorganization upon leaving group departure. Proton inventory curves for k(cat)/K(m) for nearly all substrates are dome-shaped with an inverse isotope effect component (phi(S) = 1.2-2.4) originating from solvent reorganization during association of thrombin with substrate. These large contributions from medium effects are in full accord with the conformational adjustments required for the fulfillment of the dual, hemostatic and thrombolytic, functions of thrombin.     

A promiscuous glutathione transferase transformed into a selective thiolester hydrolase

Human glutathione transferase A1-1 (hGST A1-1) can be reengineered by rational design into a catalyst for thiolester hydrolysis with a catalytic proficiency of 1.4 x 10(7) M(-1). The thiolester hydrolase, A216H that was obtained by the introduction of a single histidine residue at position 216 catalyzed the hydrolysis of a substrate termed GSB, a thiolester of glutathione and benzoic acid. Here we investigate the substrate requirements of this designed enzyme by screening a thiolester library. We found that only two thiolesters out of 18 were substrates for A216H. The A216H-catalyzed hydrolysis of GS-2 (thiolester of glutathione and naphthalenecarboxylic acid) exhibits a k(cat) of 0.0032 min(-1) and a KM of 41 microM. The previously reported catalysis of GSB has a k(cat) of 0.00078 min(-1) and KM of 5 microM. The k(cat) for A216H-catalyzed hydrolysis of GS-2 is thus 4.1 times higher than for GSB. The catalytic proficiency (k(cat)/KM)/k(uncat) for GS-2 is 3 x 10(6) M(-1). The promiscuous feature of the wt protein towards a range of different substrates has not been conserved in A216H but we have obtained a selective enzyme with high demands on the substrate.     

Optimization of high-performance blue organic light-emitting diodes containing tetraphenylsilane molecular glass materials

Molecular glass material (4-(5-(4-(diphenylamino)phenyl)-2-oxadiazolyl)phenyl)triphenylsilane (Ph(3)Si(PhTPAOXD)) was used as the blue light-emitting material in the fabrication of high-performance organic light-emitting diodes (OLEDs). In the optimization of performance, five types of OLEDs were constructed from Ph(3)Si(PhTPAOXD): device I, ITO/NPB/Ph(3)Si(PhTPAOXD)/Alq(3)/Mg:Ag, where NPB and Alq(3) are 1,4-bis(1-naphylphenylamino)biphenyl and tris(8-hydroxyquinoline)aluminum, respectively; device II, ITO/NPB/Ph(3)Si(PhTPAOXD)/TPBI/Mg:Ag, where TPBI is 1,3,5-tris(N-phenylbenzimidazol-2-yl)benzene; device III, ITO/Ph(2)Si(Ph(NPA)(2))(2)/Ph(3)Si(PhTPAOXD)/TPBI/Mg:Ag, where Ph(2)Si(Ph(NPA)(2))(2) is bis(3,5-bis(1-naphylphenylamino)phenyl)-diphenylsilane, a newly synthesized tetraphenylsilane-containing triarylamine as hole-transporting material; device IV, ITO/Ph(2)Si(Ph(NPA)(2))(2)/NPB/Ph(3)Si(PhTPAOXD)/TPBI/Mg:Ag; device V, ITO/CuPc/NPB /Ph(3)Si(PhTPAOXD)/Alq(3)/LiF/Al, where CuPc is Cu(II) phthalocyanine. Device performances, including blue color purity, electroluminescence (EL) intensity, current density, and efficiency, vary drastically by changing the device thickness (100-600 A of the light-emitting layer) and materials for hole-transporting layer (NPB and/or Ph(2)Si(Ph(NPA)(2))(2)) or electron-transporting material (Alq(3) or TPBI). One of the superior OLEDs is device IV, showing maximum EL near 19 000 cd/m(2) with relatively low current density of 674 mA/cm(2) (or near 3000 cd/m(2) at 100 mA/cm(2)) and high external quantum efficiency of 2.4% (1.1 lm/W or 3.1 cd/A). The device possesses good blue color purity with EL emission maximum (lambda(max)(EL)) at 460 nm, corresponding to (0.16, 0.18) of blue color chromaticity on CIE coordinates. In addition, the device is reasonably stable and sustains heating over 100 degrees C with no loss of luminance on the basis of the annealing data for device V. Formation of the exciplex at the interface of NPB and Ph(3)Si(PhTPAOXD) layers is verified by EL and photoluminescence (PL) spectra studies on the devices with a combination of different charge transporting materials. The EL due to the exciplex (lambda(max)(EL) at 490-510 nm) can be properly avoided by using a 200 A layer of Ph(3)Si(PhTPAOXD) in device I, which limits the charge-recombination zone away from the interface area.     

A highly sensitive method for time-resolved detection of O(1D) applied to precise determination of absolute O(1D) reaction rate constants and O(3P) yields

We demonstrate detection, in the gas-phase, of O(1D2) at concentrations down to 10(7) cm(-3) and develop this new method for time-resolved kinetic studies allowing both the total removal rate of O(1D2), of up to 1.5 x 10(6) s(-1), and the fraction quenched to O(3P(J)) by species X, k(q)/k(X), to be determined precisely from a single time profile: at 295 K we find, k(O(1D2) + N2O) = (1.43 +/- 0.08) x 10(-10) cm3 s(-1) with k(q)/k(N2O) = 0.056 +/- 0.009; k(O(1D2) + C2H2) = (3.1 +/- 0.2) x 10(-10) cm3 s(-1) with k(q)/k(C2H2) = 0.020 +/- 0.010; k(q)/k(H2O) < 0.003 for O(1D2) + H2O.     

The crystal chemistry of Ca(10-y)(SiO4)3(SO4)3Cl(2-x-2y)F(x) ellestadite

Fluor-chlorellestadite solid solutions Ca(10)(SiO(4))(3)(SO(4))(3)Cl(2-x)F(x), serving as prototype crystalline matrices for the fixation of hazardous fly ash, were synthesized and characterized by powder X-ray and neutron diffraction (PXRD and PND), transmission electron microscopy (TEM), and Fourier transform infrared spectroscopy (FTIR). The lattice parameters of the ellestadites vary linearly with composition and show the expected shrinkage of unit cell volume as fluorine (IR = 1.33 ?) displaces chlorine (IR = 1.81 ?). FTIR spectra indicate little or no OH(-) in the solid solutions. All compositions conform to P6(3)/m symmetry where F(-) is located at the 2a (0, 0, (1)/(4)) position, while Cl(-) is displaced out of the 6h Ca(2) triangle plane and occupies 4e (0, 0, z) split positions with z ranging from 0.336(3) to 0.4315(3). Si/S randomly occupy the 6h tetrahedral site. Ellestadites rich in Cl (x ≤ 1.2) show an overall deficiency in halogens (<2 atom per formula unit), particularly Cl as a result of CaCl(2) volatilization, with charge balance achieved by the creation of Ca vacancies (Ca(2+) + 2Cl(-) →□(Ca) + 2□(Cl)) leading to the formula Ca(10-y)(SiO(4))(3)(SO(4))(3)Cl(2-x-2y)F(x). For F-rich compositions the vacancies are found at Ca(2), while for Cl-rich ellestadites, vacancies are at Ca(1). It is likely the loss of CaCl(2) which leads tunnel anion vacancies promotes intertunnel positional disorder, preventing the formation of a P2(1)/b monoclinic dimorph, analogous to that reported for Ca(10)(PO(4))(6)Cl(2). Trends in structure with composition were analyzed using crystal-chemical parameters, whose systematic variations served to validate the quality of the Rietveld refinements.     

Inhibitor scaffolds as new allele specific kinase substrates

The elucidation of protein kinase signaling networks is challenging due to the large size of the protein kinase superfamily (>500 human kinases). Here we describe a new class of orthogonal triphosphate substrate analogues for the direct labeling of analogue-specific kinase protein targets. These analogues were constructed as derivatives of the Src family kinase inhibitor PP1 and were designed based on the crystal structures of PP1 bound to HCK and N(6)-(benzyl)-ADP bound to c-Src (T338G). 3-Benzylpyrazolopyrimidine triphosphate (3-benzyl-PPTP) proved to be a substrate for a mutant of the MAP kinase p38 (p38-T106G/A157L/L167A). 3-Benzyl-PPTP was preferred by v-Src (T338G) (k(cat)/K(M) = 3.2 x 10(6) min(-)(1) M(-)(1)) over ATP or the previously described ATP analogue, N(6) (benzyl) ATP. For the kinase CDK2 (F80G)/cyclin E, 3-benzyl-PPTP demonstrated catalytic efficiency (k(cat)/K(M) = 2.6 x 10(4) min(-)(1) M(-)(1)) comparable to ATP (k(cat)/K(M) = 5.0 x 10(4) min(-)(1) M(-)(1)) largely due to a significantly better K(M) (6.4 microM vs 530 microM). In kinase protein substrate labeling experiments both 3-benzyl-PPTP and 3-phenyl-PPTP prove to be over 4 times more orthogonal than N(6)-(benzyl)-ATP with respect to the wild-type kinases found in murine spleenocyte cell lysates. These experiments also demonstrate that [gamma-(32)P]-3-benzyl-PPTP is an excellent phosphodonor for labeling the direct protein substrates of CDK2 (F80G)/E in murine spleenocyte cell lysates, even while competing with cellular levels (4 mM) of unlabeled ATP. The fact that this new more highly orthogonal nucleotide is accepted by three widely divergent kinases studied here suggests that it is likely to be generalizable across the entire kinase superfamily.     

Hydrolysis of N-alkyl sulfamates and the catalytic efficiency of an S-N cleaving sulfamidase

The final step in the degradation of heparin sulfate involves the enzymatic hydrolysis of its 2-sulfamido groups. To evaluate the power of the corresponding sulfamidases as catalysts, we examined the reaction of N-neopentyl sulfamate at elevated temperatures and found it to undergo specific acid catalyzed hydrolysis even at alkaline pH. A rate constant of 10(-16) s(-1) was calculated using the Eyring equation for water attack on the N-protonated species at pH 7, 25 °C. As a model for the pH neutral reaction, a rate constant for hydroxide attack on (CH(3))(3)CCH(2)N(+)H(2)SO(3)(-) at pH 7, 25 °C was calculated to be 10(-19) s(-1). The corresponding rate enhancement (k(cat)/k(non)) produced by the N-sulfamidase of F. heparinum is approximately 10(16)-fold, which is somewhat larger than those generated by most hydrolytic enzymes but considerably smaller than those generated by S-O cleaving sulfatases.     

Rate coefficients for the reaction of OH with (E)-2-pentenal, (E)-2-hexenal, and (E)-2-heptenal

Rate coefficients for the gas-phase reaction of the OH radical with (E)-2-pentenal (CH(3)CH(2)CH[double bond]CHCHO), (E)-2-hexenal (CH(3)(CH(2))(2)CH[double bond]CHCHO), and (E)-2-heptenal (CH(3)(CH(2))(3)CH[double bond]CHCHO), a series of unsaturated aldehydes, over the temperature range 244-374 K at pressures between 23 and 150 Torr (He, N(2)) are reported. Rate coefficients were measured under pseudo-first-order conditions in OH with OH radicals produced via pulsed laser photolysis of HNO(3) or H(2)O(2) at 248 nm and detected by pulsed laser-induced fluorescence. The rate coefficients were independent of pressure and the room temperature rate coefficients and Arrhenius expressions obtained are (cm(3) molecule(-1) s(-1) units): k(1)(297 K)=(4.3 +/- 0.6)x 10(-11), k(1)(T)=(7.9 +/- 1.2)x 10(-12) exp[(510 +/- 20)/T]; k(2)(297 K)=(4.4 +/- 0.5)x 10(-11), k(2)(T)=(7.5 +/- 1.1)x 10(-12) exp[(520 +/- 30)/T]; and k(3)(297 K)=(4.4 +/- 0.7)x 10(-11), k(3)(T)=(9.7 +/- 1.5)x 10(-12) exp[(450 +/- 20)/T] for (E)-2-pentenal, (E)-2-hexenal and (E)-2-heptenal, respectively. The quoted uncertainties are 2sigma(95% confidence level) and include estimated systematic errors. Rate coefficients are compared with previously published room temperature values and the discrepancies are discussed. The atmospheric degradation of unsaturated aldehydes is also discussed.     

Proton transfer to nickel-thiolate complexes. 2. Rate-limiting intramolecular proton transfer in the reactions of [Ni(SC(6)H(4)R-4)(PhP[CH(2)CH(2)PPh(2)](2))](+) (R = NO(2), Cl, H, Me, or MeO)

The protonation of [Ni(SC(6)H(4)R-4)(triphos)](+) (triphos = PhP[CH(2)CH(2)PPh(2)](2); R = NO(2), Cl, H, Me, or MeO) by [lutH](+) (lut = 2,6-dimethylpyridine) to form [Ni(S(H)C(6)H(4)R-4)(triphos)](2+) is an equilibrium reaction in MeCN. Kinetic studies, using stopped-flow spectrophotometry, reveal that the reactions occur by a two-step mechanism. Initially, [lutH](+) rapidly binds to the complex (K(2)(R)) in an interaction which probably involves hydrogen-bonding of the acid to the sulfur. Subsequent intramolecular proton transfer from [lutH](+) to sulfur (k(3)(R)) is slow because of both electronic and steric factors. The X-ray crystal structures of [Ni(SC(6)H(4)R-4)(triphos)](+) (R = NO(2), H, Me, or MeO) show that all are best described as square-planar complexes, with the phenyl substituents of the triphos ligand presenting an appreciable barrier to the approach of the sterically demanding [lutH](+) to the sulfur. The kinetic characteristics of the intramolecular proton transfer from [lutH](+) to sulfur have been investigated. The rate of intramolecular proton transfer exhibits a nonlinear dependence on Hammett sigma(+), with both electron-releasing and electron-withdrawing 4-R-substituents on the coordinated thiolate facilitating the rate of proton transfer (NO(2) > Cl > H > Me < MeO). The rate constants for intramolecular proton transfer correlate well with the calculated electron density of the sulfur. The temperature dependence of the rate of the intramolecular proton transfer reactions shows that deltaH() is small but increases as the 4-R-substituent becomes more electron-withdrawing [deltaH = 4.1 (MeO), 6.9 (Me), 11.4 kcal mol(-)(1) (NO(2))], while DeltaS() becomes progressively less negative [deltaS = -50.1 (MeO), -41.2 (Me), -16.4 (NO(2)) cal K(-)(1) mol(-)(1)]. Studies with [lutD](+) show that the rate of intramolecular proton transfer varies with the 4-R-substituent [(k(3)(NO)2)(H)/(k(3)(NO)2)(D) = 0.39; (k(3)(Cl))(H)/(k(3)(Cl))(D) = 0.88; (k(3)(Me))(H)/(k(3)(Me))(D) = 1.3; (k(3)(MeO))(H)/(k(3)(MeO))(D) = 1.2].     

Kinetics and mechanism of iron(III)-nitrilotriacetate complex reactions with phosphate and acetohydroxamic acid

The kinetics and mechanism of the substitution of coordinated water in nitrilotriacetate complexes of iron(III) (Fe(NTA)(OH(2))(2) and Fe(NTA)(OH(2))(OH)(-)) by phosphate (H(2)PO(4)(-) and HPO(4)(2)(-)) and acetohydroxamic acid (CH(3)C(O)N(OH)H) were investigated. The phosphate reactions were found to be pH dependent in the range of 4-8. Phosphate substitution rates are independent of the degree of phosphate protonation, and pH dependence is due to the difference in reactivity of Fe(NTA)(OH(2))(2) (k = 3.6 x 10(5) M(-)(1) s(-)(1)) and Fe(NTA)(OH(2))(OH)(-) (k = 2.4 x 10(4) M(-)(1) s(-)(1)). Substitution by acetohydroxamic acid is insensitive to pH in the range of 4-5.2, and Fe(NTA)(OH(2))(2) and Fe(NTA)(OH(2))(OH)(-) react at equivalent rates (k = 4.2 x 10(4) and 3.8 x 10(4) M(-)(1) s(-)(1), respectively). Evidence for acid-dependent and acid-independent back-reactions was obtained for both the phosphate and acetohydroxamate complexes. Reactivity patterns were analyzed in the context of NTA labilization of coordinated water, and outer-sphere electrostatic and H-bonding influences were analyzed in the precursor complex (K(os)).     

S = (3)/(2) <= => S = (1)/(2) spin crossover behavior in five-coordinate halido- and pseudohalido-bis(o-iminobenzosemiquinonato)iron(III) complexes

Five-coordinate halido- and pseudohalido-bis(o-iminobenzosemiquinonato)iron(III) complexes [Fe(III)X(L(ISQ))(2)] (X = Cl(-) (1), Br(-) (2a, 2b), I(-) (3), N(3)(-) (4), and NCS(-) (5)) have been synthesized where (L(ISQ))(1)(*)(-) represents the pi radical anion N-phenyl-o-imino(4,6-di-tert-butyl)benzosemiquinonate(1-). The molecular structures of the two polymorphs 2a and 2b have been determined at 100, 220, and 295 K, respectively, by single crystal X-ray crystallography. Variable temperature magnetic susceptibility data reveal the following electronic ground states, S(t): For 1, it is (3)/(2). Polymorph 2a contains a 1:1 mixture of (3)/(2) and (1)/(2) forms in the range 4.2 to approximately 150 K; above 150 K the latter form undergoes a spin crossover (1)/(2) --> (3)/(2). Polymorph 2b contains only the S(t) = (3)/(2) form (4-300 K). Complex 3 contains the S(t) = (1)/(2) form in the range 4-130 K, but above 130 K, a spin crossover to the (3)/(2) form is observed which is confirmed by three crystal structure determinations at 100, 220, and 295 K. Complex 4 possesses an S(t) = (1)/(2) ground state at 80 K and undergoes a spin crossover at higher temperatures. Complex 5 has a temperature-independent S(t) = (3)/(2) ground state. All crystal structures of 1, 2a, 2b, 3, 4, and 5, regardless at which temperature the data sets have been measured, show that two o-iminobenzosemiquinonate(1-) pi radical anions are N,O-coordinated in all of these neutral iron complexes. The Fe-N and Fe-O bond distances are longer in the S(t) = (3)/(2) and shorter in the S(t) = (1)/(2) forms. The S(t) = (3)/(2) ground state is attained via intramolecular antiferromagnetic coupling between a high spin ferric ion (S(Fe) = (5)/(2)) and two ligand pi radicals whereas the S(t) = (1)/(2) form is generated from exchange coupling between an intermediate spin ferric ion (S(Fe) = (3)/(2)) and two ligand radicals.     

Catecholase activity of a series of dicopper(II) complexes with variable Cu-OH(phenol) moieties

The catecholase activity of a series of dicopper(II) complexes containing different numbers of phenol groups coordinated to the metal centers was studied to identify functional as well as structural models for the type III copper enzymes tyrosinase and catechol oxidase. The syntheses and characterization of complexes [Cu(2)(H(2)bbppnol)(mu-OAc)(H(2)O)(2)]Cl(2).2H(2)O (1) and [Cu(2)(Hbtppnol)(mu-OAc)](ClO(4))(2) (2) were previously reported by us (Inorg. Chim. Acta 1998, 281, 111-115; Inorg. Chem. Commun. 1999, 2, 334-337), and complex [Cu(2)(P1-O(-))(OAc(-))](ClO(4))(2) (3) was previously reported by Karlin et al. (J. Am. Chem. Soc. 1997, 119, 2156-2162). The catalytic activity of the complexes 1-3 on the oxidation of 3,5-di-tert-butylcatechol was determined spectrophotometrically by monitoring the increase of the 3,5-di-tert-butyl-o-benzoquinone characteristic absorption band at about 400 nm over time in methanol saturated with O(2)/aqueous buffer pH 8 solutions at 25 degrees C. The complexes were able to oxidize 3,5-di-tert-butylcatechol to the corresponding o-quinone with distinct catalytic activity. A kinetic treatment of the data based on the Michaelis-Mentèn approach was applied. The [Cu(2)(H(2)bbppnol)(mu-OAc)(H(2)O)(2)]Cl(2) small middle dot2H(2)O complex showed the highest catalytic activity of the three complexes as a result of a high turnover rate (k(cat) = 28 h(-1)) combined with a moderate substrate-catalyst binding constant (K(ass) = 1.3 x 10(3) M(-1)). A mechanism for the oxidation reaction is proposed, and reactivity differences, k(cat)/K(M) of the complexes, were found to be dependent on (DeltaE)(1,2), the difference in the driving force for the reduction reactions Cu(II)(2)/Cu(II)Cu(I) and Cu(II)Cu(I)/Cu(I)(2).     

Transient kinetic studies of protein hydrolyses by endo- and exo-proteases on a 27 MHz quartz-crystal microbalance

We have compared endo- and exo-type protease reactions and characterized the enzymatic reaction mechanisms by determining all kinetic parameters (k(on), k(off), k(cat), K(d) = k(off)/k(on), and K(m) = (k(off) + k(cat))/k(on)) by following the mass change of the formation and the decay of the enzyme-substrate (ES) complex (k(on) and k(off)), and the formation of the product (k(cat)) on a 27 MHz quartz-crystal microbalance in aqueous solutions. The K(m) value was nearly equal to the K(d) value for the endo-type protease (subtilisin and alpha-chymotrypsin); however, in the case of exo-type protease (carboxypeptidase P), the K(m) value was quite different from the K(d) value, due to k(cat) > k(off).     

Selective catalysis with peptide dendrimers

Peptide dendrimers incorporating 3,5-diaminobenzoic acid 1 as a branching unit (B) were prepared by solid-phase synthesis of ((Ac-A(3))(2)B-A(2))(2)B-Cys-A(1)-NH(2) followed by disulfide bridge formation. Twenty-one homo- and heterodimeric dendrimers were obtained by permutations of aspartate, histidine, and serine at positions A(1), A(2), and A(3). Two dendrimers catalyzed the hydrolysis of 7-hydroxy-N-methyl-quinolinium esters (2-5), and two other dendrimers catalyzed the hydrolysis of 8-hydroxy-pyrene-1,3,6-trisulfonate esters (10-12). Enzyme-like kinetics was observed in aqueous buffer pH 6.0 with multiple turnover, substrate binding (K(M) = 0.1-0.5 mM), rate acceleration (k(cat)/k(uncat) > 10(3)), and chiral discrimination (E = 2.8 for 2-phenylpropionate ester 5). The role of individual amino acids in catalysis was investigated by amino acid exchanges, highlighting the key role of histidine as a catalytic residue, and the importance of electrostatic and hydrophobic interactions in modulating substrate binding. These experiments demonstrate for the first time selective catalysis in peptide dendrimers.