Probing the photochemical mechanism in photoactive yellow protein

Selectively bridged model compounds related to the chromophore in photoactive yellow protein have been synthesized where the single bond adjacent to the benzene ring (bond 1) and where both bond 1 and the adjacent double bond (bond 2) are bridged. They were compared to the nonbridged reference compound regarding their photophysical properties using steady-state and time-resolved fluorescence at various temperatures. Quantum chemical calculations were additionally performed and showed that several conformers are populated in the ground state. The neutral model compounds show that the nonradiative deactivation channel is linked to both single- and double-bond twisting. The relative importance of single-bond twisting is increased for the corresponding deprotonated hydroxy compounds with an enhanced donor character. The simultaneous photochemical activity of both single and double bonds explains the ease of photochemical isomerization in the confined environment of the natural PYP protein and also of the primary step in the vision process in rhodopsin.     

Probing charge transport in pi-stacked fluorene-based systems

The molecular parameters governing charge transport along a pi-stacked fluorene chain in poly(dibenzofulvene) are studied by a joint experimental and theoretical approach involving high-resolution gas-phase photoelectron spectroscopy and quantum-mechanical methods. We specifically investigate the electronic couplings between fluorene moieties as well as the intramolecular reorganization energies, for both holes and electrons. Our results indicate that a pi-stacked fluorene chain favors hole transport over electron transport. The values for electronic couplings and reorganization energies estimated here are compared with those derived recently for pentacene.     

Probing the mechanism of sulfoxide-catalyzed hemiacetal activation in dehydrative glycosylation

The concept of sulfoxide-covalent catalysis has been established in the context of a versatile hemiacetal hydroxyl activation/substitution reaction for the formation of anomeric linkages. Mechanistic studies focused on the hemiacetal activation process show that this transformation proceeds in the presence of a sulfonic anhydride and an acid scavenger through the intermediacy of a glycosyl sulfonate species (10), which serves as a resting state prior to the addition of an external nucleophile and subsequent glycosidic bond formation. Successful determination of the proportion of (18)O incorporation in 10 as a function of its formation, via the technique of dynamic monitoring of (13)C-(16/18)O isotopic chemical shift perturbations, provides strong evidence that hemiacetal activation proceeds through initial nucleophilic addition of the hemiacetal hydroxyl to the S(IV)-center of putative sulfonium sulfonate 6. Further confirmation was obtained through the independent synthesis, structure verification, and (1)H NMR detection of glycosyl oxosulfonium 11 during the sulfoxide-catalyzed conversion of hemiacetal 3 to glycosyl sulfonate 10.     

The existance of a group translocation transport mechanism in animal cells: uptake of the ribose moiety of inosine.

After exposure to inosine, transport-competent plasma membrane vesicles isolated from SV-40-transformed Bal/c 3T3 cells accumulate intravesicular ribose 1-PO4 at a concentration 200-fold greater than the extravesicular concentration. An analysis of the purine nucleoside phosphorylase activity distribution in various subcellular fractions, relative to other enzyme activities, indicated the presence of plasma membrane-associated purine nucleoside phosphorylase activity. The plasma membrane vesicles appear relatively impermeable to hypoxanthine. However, hypoxanthine, which is a competitive inhibitor of the transport reaction, is the only compound tested capable of mediating efflux of already accumulated ribose 1-PO4. In addition, hypoxanthine does not result in the efflux of transported uridine which is accumulated in these membrane vesicles as uridine. Exogenous ribose 1-PO4 neither results in counterflow nor does it inhibit the original uptake reaction. The following transport reaction is proposed: uptake occurs by group translocation, mediated by membrane-localized purine nucleoside phosphorylase. The data are consistent with sites for inosine and hypoxanthine being on the outer membrane surface whereas the ribose 1-PO4 site is only on the inner surface.     

Compartmentalisation in miniemulsions: exploration of compartmentalisation and some interesting end-uses

Infrared spectroscopy and differential scanning calorimetry were used to demonstrate that miniemulsions of relatively hydrophobic monomers are compartmentalised during the reaction. Experiments with blends of miniemulsions of different composition revealed that no mass transfer takes place between droplets of different composition in the same reactor. In addition, it was shown that it is possible to make high solids content, low viscosity latexes with bimodal particle size and molecular weight distributions because of this property.     

Probing the transmembrane potential of bacterial cells by voltage-sensitive dyes.

Fluorescent dyes have been widely employed as optical indicators of the membrane potential difference in cells, isolated organelles and lipid vesicles that are too small to make microelectrode measurements feasible. We describe here the application of a carbocyanine dye, 3,3'-dipropylthiodicarbocyanine iodide [DiS-C3-(5)], to monitor the transmembrane potential changes induced by a variation of the K+ concentration for the cells of Escherichia (E.) coli and photosynthetic bacterium Rhodospirillum (R.) rubrum. The cells were first incubated in buffers containing DiS-C3-(5) and K+ ions of various concentrations until the fluorescence intensity reached a constant value. Valinomycin was then added to the solution, which caused changes in the fluorescence intensity, depending on the K+ concentrations. The membrane potential is shown to have a linear relationship with the fluorescence intensity of DiS-C3-(5). The results demonstrate that the K+ concentrations inside intact cells are 4.6 mM and 5.3 mM for E. coli and R. rubrum, respectively. The diffusion potentials of K+ ions were determined using the Nernst equation over the range of -1.3 mV to 44 mV, corresponding to K+ concentrations of 5 mM -25 mM outside of the cells.     

Methods for rapidly altering the permeability of mammalian cells.

Various agents alter mammalian cells so that they rapidly become nonspecifically permeable to substances that ordinarily do not penetrate intact cells. Thus, toluene renders liver cells permeable to nucleotides and macromolecules. Tween 80 and Tween 60 act on similar fashion, and the effect is reversible. Dextran sulfate reversibly alters the permeability of Ehrlich ascites tumor cells, which offers a tool for studying the control of macromolecular syntheses and other processes. Brief exposure to external ATP alters the permeability of certain transformed mouse cells but not of untransformed cells. The effect of ATP is rapidly reversible.     

Cathode performance and oxygen-ion transport mechanism of copper oxide for solid-oxide fuel cells

Various copper oxide cathode materials were studied over a YSZ tube at 800 °C and an oxygen partial pressure of 0.21 atm. It was found that the cathode performance of CuO may be improved by doping Ag metal into it. However, an optimal doping content exists and is around 50 mol% Ag. It was also found that copper oxide itself possess enough oxygen vacancies needed for the role of a mixed conductor. The activation energy for the lattice-oxygen reduction and migration has been calculated to be 55.4 kJ/mol. By the use of electrochemical measurements over Ag-YSZ/CuO electrodes, models for the two-layer electrode have been proposed and justified for oxygen-ion transport mechanisms at low and high overpotentials, respectively; thus, the roles of CuO on the cathode behavior of the electron and oxygen-ion conductivities were well identified. Electronic Publication     

Monitoring of the uptake and metabolism of aminooxy analogues of polyamines in cultured cells by high-performance liquid chromatography.

A high-performance liquid chromatographic method for the determination of polyamines and their aminooxy analogues is described. Oxime derivatization with a ketone is used to protect the aminooxy group during post-column reaction with o-phthalaldehyde. The amount of the polyamines and of the oximes of their aminooxy analogues can be determined simultaneously in cultured cells and cell culture media. The limit of detection is 20-30 pmol, and the response of the fluorescence detection is linear up to 4 nmol. The separation of the aminooxy analogues from the naturally occurring polyamines can be varied by using different ketones for oxime formation. The method was used to measure the stability of aminooxy analogues of putrescine (1-aminooxy-3-aminopropane) and spermidine [N-(2-aminooxyethyl)-1,4-diaminobutane and 1-aminooxy-3-N-(3-aminopropyl)aminopropane] in cell culture media and the uptake into cultured baby hamster kidney (BHK21/C13) cells.     

On the mechanism of charge transport in pentacene

Terahertz transient conductivity measurements are performed on pentacene single crystals, which directly demonstrate a strong coupling of charge carriers to low frequency molecular motions with energies centered around 1.1 THz. We present evidence that the strong coupling to low frequency motions is the factor limiting the conductivity in these organic semiconductors. Our observations explain the apparent paradox of the "bandlike" temperature dependence of the conductivity beyond the validity limit of the band model.     

Probing the mechanism of Prins cyclisations and application to the synthesis of 4-hydroxytetrahydropyrans

Trapping intermediates on the Prins cyclisation pathway with carbon-based nucleophiles has given further insight into factors affecting the acid-mediated reactions of homoallylic alcohols with aldehydes, enabling the design of efficient syntheses of 4-hydroxy-2,6-disubstituted tetrahydropyrans.     

Probing the reaction mechanism of aristolochene synthase with 12,13-difluorofarnesyl diphosphate

12,13-Difluorofarnesyl diphosphate, prepared using Suzuki-Miyaura chemistry, is a potent inhibitor of aristolochene synthase (AS), indicating that the initial cyclisation during AS catalysis generates germacryl cation in a concerted reaction.     

Sorption and transport mechanism of gases in polycarbonate membranes

The transport phenomena of oxygen and nitrogen across a pure polycarbonate (PC) and a cobalt(III) acetylactonate (Co(acac)₃) containing PC membrane was studied. Co(acac)₃ was added into a polycarbonate membrane to enhance its oxygen solubility. The oxygen sorption isotherms was measured. It was found that the oxygen solubility decreased sharply as pressure increased, especially at low pressure region. On the contrary, the oxygen permeability increased slightly with respect to pressure. Both the solution-diffusion model and traditional dual mobility model were unable to explain the inconsistent pressure dependency between solubility and permeability. Instead of adopting Langmuir-Henry sorption model, a modified dual mobility model which incorporates BET-type isotherm to describe oxygen sorption. The diffusivity of molecules moving at the first adsorbed layer was assumed to be different from those moving at higher layers. This modified dual mobility model satisfactorily described both the pressure dependency of oxygen solubility and permeability. It was also found that the increase of oxygen/nitrogen selectivity was not due to the elevation of oxygen to nitrogen solubility ratio but due to the mobility ratio of oxygen to nitrogen at the higher adsorption layers.     

Probing the mechanism of aqueous two-phase system formation for alpha-elastin on-chip

The kinetics of formation of the aqueous two-phase system (ATPS) for alpha-elastin was studied by dark field microscopy in an on-chip linear temperature gradient. Scattering intensities of protein solutions were recorded as a function of temperature and time, simultaneously at several concentrations. It was found that the formation rate of the ATPS could be fit as a first-order process and that the apparent rate constant increased with protein concentration. The activation energy for the process was 9.5 +/- 0.5 kcal/mol, and this result was consistent with a coalescence mechanism. Experiments were also conducted with varying concentrations of sodium dodecyl sulfate, which shut off the coalescence mechanism forcing ATPS formation to proceed through Ostwald ripening. When this was done, the activation energy increased to 33 +/- 2 kcal/mol and the kinetics became consistent with a second-order process.     

Studies of polyamines transport through liquid membranes with D2EHPA as a carrier

The transport of polyamines through the liquid membranes with di-2-ethylhexyl phosphoric acid (D2EHPA) was investigated. The study was performed in three main steps: liquid-liquid extraction (LLE), bulk liquid membrane (BLM) extraction, and supported liquid membrane (SLM) extraction. Equilibrium distribution experiments allowed determining the extraction constants and stoichiometric coefficients for each polyamine. It turned out that one amino group binds two molecules of carrier (one D2EHPA dimer) and the extractability of polyamine rises with the increase in number of function groups in the molecule. The BLM and SLM experiments showed that despite considerable differences in distribution ratio between various polyamines the extraction efficiencies for all of them are very approximate. The smaller diamines compensate the lowest affinity to membrane phase with faster interface reaction kinetics and higher diffusivity. Finally, the SLM extraction conditions were optimized. The main parameters that influence the transport are the pH of the donor and acceptor phases. The extraction efficiencies obtained for polyamines are high (80-90%) and give hope for an application in bioanalytical chemistry.