A theoretical approach to substituent effects: Interaction between directly bonded groups in the isoelectronic series XNH3+, XCH3, and XBH3−

Ab initio molecular orbital theory including full geometry optimization at the 4-31G level is used to examine the interactions between substitutents X(X = Li, BeH, BH₂, CH₃, NH₂, OH and F) and substrates Y(Y = NH₃⁺, CH₃, BH₃^?) in the isoelectronic series XNH₃⁺, XCH₃ and XBH₃^?. The results indicate that the interaction energies are dominated by σ-effects. NH₃⁺ is found to interact favorably with the σ-donors (e.g. Li, BeH and BH₂) and unfavorably with the σ-acceptors (e.g. F, OH, NH₂). The reverse pattern a observed for XBH₃^?. The range of interaction energies for XCH₃ is considerably smaller than for XNH₃⁺ and XBH₃^?.     

A theoretical approach to substituent effects. Structural consequences of electrostatic and orbital interactions in model mono- and disubstituted methanes

Ab initio molecular orbital theory is used to examine the effect of substituents on bond lengths in mono- and disubstituted methanes. The relative importance of electrostatic and orbital interaction terms are assessed. The results suggest that for substituents (X) which show powerful σ effects and weak π interactions (e.g., F), the changes in bond length are due primarily to the electrostatic component except in some disubstituted methanes in which case the change in the hyperconjugative ability of the C—X bond is also important. On the other hand, substituents X which show weak σ effects but powerful π interactions (e.g., NH₂) affect bond lengths primarily through hyperconjugative interaction of a filled or vacant π-type orbital on X with the adjacent bonds.     

Comparative theoretical study of the dissociation process of the isoelectronic molecules BH3CO,CH2CO,HNCO, CO2 and BH3N2, CH2N2, HN3, N2O

Anab initio study of the electronic structure of several 22-electrons molecules is presented. The equilibrium geometries of their ground state are calculated at the SCF level using the 6–31G basis set and are found to be in good agreement with the experimental geometries. The dissociation process of these molecules leading to the isoelectronic products CO or N₂ on the one hand and BH₃, CH₂, NH and O on the other hand is studied. The least-energy dissociation paths of the ground states determined at the SCF level are compared on the basis of electron density interactions. The dissociation energies corresponding to the two lowest dissociation channels are calculated. In these calculations, the correlation energy is taken into account using a non-variational method developed previously. The calculated values of dissociation energies are in good agreement with the existing experimental values. The results permit to predict values for HNCO, BH₃CO and CH₂N₂ and to confirm the instability of BH₃N₂.Aspirant du Fonds National Belge de la Recherche Scientifique.     

Substituent effects in mass spectrometry—II. The effect of substituents on the dissociation of para and meta disubstituted benzenes

The effect of substituents on the activation energy for primary dissociation processes in the molecular ions of mono- and para and meta di-substituted benzenes has been examined. Where the daughter ion retains the substituent group, variation of the energy of activation derives from a combination of the effects of substituents on the ionisation potential of the molecular ion and the appearance potential of the daughter ion. An equation relating the energy of activation for the fragmentation of the molecular ion of a mono-substituted benzene to that of related para and meta di-substituted benzenes is presented.     

A theoretical approach to substituent effects: Stabilities and conformational preferences in β-substituted ethyl radicals

Ab initio molecular orbital theory is used to study substituent effects in a series of β-substituted Et radicals XCH₂CH₂. For X = BH₂ (plan.), CH₃, NH₂, OH and F, only slight conformational preferences and weak stabilizations are indicated. Such behaviour may be rationalized, using a PMO model, in terms of opposing changes, accompanying variation in X, in positive and negative hyperconjugation between the XCH₂ group and the CH₂ centre. On the other hand, for groups containing an appropriately oriented, low-lying vacant orbital, viz. X = Li, BeH and BH₂ (perp.), there is a pronounced preference for the perpendicular conformation of the radical. This is attributed to 1,3-interaction between the singly-occupied 2p(C) orbital and the vacant 2p(X) orbital.     

A shock tube study of the reaction NH2 + CH4 → NH3 + CH3 and comparison with transition state theory

The rate coefficient for NH₂ + CH₄ → NH₃ + CH₃ (R1) has been measured in a shock tube in the temperature range 1591–2084 K using FM spectroscopy to monitor NH₂ radicals. The measurements are combined with a calculation of the potential energy surface and canonical transition state theory with WKB tunneling to obtain an expression for k₁ = 1.47 × 10³ T ^3.01 e^?5001/T(K) cm³ mol^?1 s^?1 that describes available data in the temperature range 300 –2100 K. © 2003 Wiley Periodicals, Inc. Int J Chem Kinet 35: 304–309, 2003     

Matrix isolation infrared spectroscopic study of the interaction of CH3ReO3 with NH3

The matrix isolation technique has been combined with infrared spectroscopy to identify and characterize the product of the codeposition of CH3ReO3 with NH3 into inert matrices at 14 K. This codeposition led to the formation of the isolated 1:1 complex between these two reagents and its isolation in argon and nitrogen matrices. The complex is characterized by perturbations to all of the vibrational modes of the NH3 subunit in the complex, including a large, 185 cm(-1) blue shift of v2, the symmetric deformation mode. In addition, shifts of the -ReO3 antisymmetric stretch and -ReO3 symmetric bending of the CH3ReO3 subunit in the complex were observed. This complex, while predicted theoretically, has not been reported previously.     

CH3NH3PbI3 perovskite single crystals: surface photophysics and their interaction with the environment

Here we identify structural inhomogeneity on a micrometer scale across the surface of a CH₃NH₃PbI₃ perovskite single crystal. At the crystal edge a local distortion of the crystal lattice is responsible for a widening of the optical bandgap and faster photo-carrier recombination. These effects are inherently present at the edge of the crystal, and further enhanced upon water intercalation, as a preliminary step in the hydration of the perovskite material.     

Sequential addition of H2O, CH3OH, and NH3 to Al3O3-: a theoretical study

Photoelectron spectra of two species, Al3O3(H2O)2- and Al3O3(CH3OH)2-, that are produced by the addition of two water or methanol molecules to Al3O3- are interpreted with density-functional geometry optimizations and electron propagator calculations of vertical electron detachment energies. In both cases, there is only one isomer that is responsible for the observed spectral features. A high barrier to the addition of a second molecule may impede the formation of Al3O3N2H6- clusters in an analogous experiment with NH3.     

A theoretical approach to the thermochemistry of the polymerization of some derivatives of the monomers CH2X (X = CH2, NH,O)

In this work, we have calculated the thermodynamic parameters of the polymerization of some derivatives of the species CH₂X (X = CH₂, NH, O), using ab initio methods of quantum chemistry and the usual formalism of statistical thermodynamics. It is shown that the Gibbs functions ΔG(l, c) corresponding to CH₂NOCH₃, CNCHNCN, CF₂O and all the percyano derivatives are largely positive which indicates that the spontaneous (radical or ionic) chain polymerization of these monomers is thermodynamically prohibited.     

A theoretical study of substituent effects on the structure of isolated and condensed three-membered rings. A comparison between radicals and parent hydrocarbons

Substituent effects on the structure of radicals and parent hydrocarbons formed by isolated or condensed three-membered rings have been investigated by Hartree-Fock, post-Hartree-Fock and density functional methods. The trends of structural parameters computed for the hydrocarbon systems are in agreement with available experimental data. Substituent effects can be rationalized in terms of interactions between localized orbitals obtained by natural bond analysis. The effects are even larger in free radicals and can be analyzed using the same model. Received: 13 March 1998 / Accepted: 13 July 1998 / Published online: 9 October 1998     

Effects of substituents on the thermodynamic and kinetic stabilities of HCGeX (X = H, CH3, F, and Cl) isomers. A theoretical study

The effect of substitution on the potential energy surfaces of HC identical to GeX (X = H, CH3, F, and Cl) were explored using density functional theory (B3LYP) and QCISD methods. The theoretical findings suggest that (H)(X)C = Ge: is the minimum on the singlet potential energy surface, regardless of the substituents (X) used. On the other hand, HC identical to GeX and XC identical to GeH are found to be local minima on the surface, but they are neither kinetically nor thermodynamically stable.     

Cheminformatics analysis of organic substituents: identification of the most common substituents,calculation of substituent properties,and automatic identification of drug-like bioisosteric groups

A large set of more than 3 million molecules was processed to find all the organic substituents contained in the set and to identify the most common ones. During the analysis, 849 574 unique substituents were found. Extrapolated to the number of known organic molecules, this result suggests that about 3.1 million substituents are known. Based on these findings the size of virtual organic chemistry space accessible using currently known synthetic methods is estimated to be between 10(20) and 10(24) molecules. The extracted substituents were characterized by calculated electronic, hydrophobic, steric, and hydrogen bonding properties as well as by the drug-likeness index. Various possible applications of such a large database of drug-like substituents characterized by calculated properties are discussed and illustrated by reference to a Web-based tool for automatic identification of bioisosteric groups.     

Study of the interaction between aniline and CH3CN, CH3Cl and CH3F

A computational study of dimers formed by aniline and one or two CH₃X molecules, X being CN, Cl or F, was carried out to elucidate the main characteristics of the interacting systems. Two different structures were found for each of the dimers, depending on the relative location of the CH₃X molecule with respect to the NH₂ hydrogen atoms. The most stable complex is formed with acetonitrile, with a complexation energy amounting to ?27.0?kJ/mol. Methyl chloride and methyl fluoride form complexes with complexation energies amounting to ?18.1 and ?17.5?kJ/mol, respectively, though the structural arrangement is quite different for both structures. In most complexes, the leading contribution to the stabilization of the complex is dispersion, though the electrostatic contribution is almost as important. Three different minima were obtained for clusters containing two CH₃X molecules depending on the side they occupy with respect to the phenyl ring. The complexation energies for these structures amount to ?58.5, ?38.6 and ?36.3?kJ/mol for acetonitrile, methyl chloride and methyl fluoride, respectively.     

Transmission of substituent effects through unsaturated systems. I—relative magnitudes of proton and carbon substituent chemical shifts in ethylenes,butadienes, α-enones and benzenes

The carbon-13 shifts of C-1, C-2 and C-3 are determined in a series of 1-cyclohexen-3-ones substituted in position 1. Linear relationships are demonstrated between the substituent chemical shifts of corresponding carbons in substituted ethylenes, butadienes, α-enones and benzenes. The substituent chemical shifts of proton H-2 are also reported and correlated with those of corresponding protons in ethylenes and benzenes. The slopes of the lines for the carbons directly linked to the substituent are close to unity, showing a relative independence of the substituent effect for this nucleus from the variation of the unsaturated framework. In contrast to this, the transmission of the substituent effect through one double bond (nuclei β to the substituents) decreases as the number of conjugated π bonds in the whole structure increases. This relationship is interpreted as being due to the ability of an unsaturated system to spread the variation of π electron density induced by the substituent.