Observation and rovibrational analysis of the ν2 band of HCN–HCl

The high-resolution infrared absorption spectrum of an equilibrium mixture of HCN and HCl in a static gas long-path absorption cell is recorded in the 2500–2900 cm⁻¹ spectral region at 205 K. The spectrum shows rovibrational structure which has the typical appearance of a parallel band of a linear molecule and is assigned to the intramolecular H–Cl stretching vibration band ν₂ of the linear HCN–H³⁵Cl heterodimer. The rovibrational analysis of the band yield a band origin ν₀ of 2779.0968(12) cm⁻¹ together with a value for the upper-state rotational constant B′ of 0.067722(2) cm⁻¹. The observed red shift of 107 cm⁻¹ for the ν₂ band of HCN–H³⁵Cl relative to the H–Cl stretching vibration band of monomer H³⁵Cl is in excellent agreement with results from the MP2/6−311++G** level of theory. The value of the upper-state rotational constant shows that the intermolecular hydrogen bond shortens by 0.022 Å upon intramolecular vibrational excitation of the ν₂ mode.     

Photoluminescence of 2-(2′-hydroxy-5′-methylbenzoyl)-1,5-diphenylpyrrole in aqueous and β-cyclodextrin environments: manifestation of open and closed conformers

Steady-state fluorometric studies have been performed on 2-(2′-hydroxy-5′-methylbenzoyl)-1,5-diphenylpyrrole (HMBDPP) in aqueous and aqueous β-cyclodextrin (β-CD) environments at ambient temperature. The fluorophore mostly shows a single emission in aqueous solution. Addition of β-CD to the aqueous solution of the fluorophore results in the development of another emission band at higher energy. The difference in the fluorometric behaviour is assigned to a remarkable change in the polarity of the microenvironment within the supramolecular structural environment compared to that of the bulk aqueous phase. Semi-empirical calculation (AM1-SCI) rules out the possibility of intramolecular proton transfer reaction in any of the S₀, S₁ and T₁ states of the fluorophore. It is proposed that HMBDPP exists mostly in the intermolecularly hydrogen-bonded form (open conformer) in aqueous solution while within β-CD environment, it is the intramolecularly hydrogen-bonded form (closed conformer) that predominates.     

Mittlere ringe-XIII Die intramolekulare acylierung der ω-(1-naphthyl)-fettsäuren

The intramolecular Friedel-Crafts cyclisation of ω-arylalkanoic acids, which is in the benzene series a valuable synthetic route to bicyclic ketones with medium-sized and large rings, has been investigated with ω-(1-naphthyl)alkanoyl chlorides. The lower members, including naphthyl-caproic acid, close the ring at position 2 to form IV. The higher homologous acids show a preference for annellation at 7, making available a new type of heteronuclear naphthalene cyclic ketones (VII). During cyclisation of ω-(1-naphthyl) decanoic acid, the 1,4 ring closure competes with the 1,7 type.

Steric hindrance of resonance as a consequence of “medium ring torsion” was studied in different classes of naphthocyclenones.     

First total synthesis of (±)-oxerine

Total synthesis of (±)-oxerine (1), a monoterpene alkaloid, starting from 3-bromopyridine (7) is described. The key reaction in this sequence is the samarium iodide (SmI₂)-mediated intramolecular cyclization of γ-ethynyl bromide (4).     

Photophysics of 6-(2′-hydroxy-4′-methoxyphenyl)-s-triazine photostabilizers

The room temperature photophysical properties of several sulphonated and unsulphonated 6-(2′-hydroxy-4′-methoxyphenyl)-s-triazines were investigated in a range of solvents by means of steady state and picosecond fluorescence spectroscopy. Compounds possessing phenyl or p-tolyl groups in the s-triazinyl ring exhibit only a very weak normal Stokes-shifted fluorescence, arising from the initially excited chromophore. Substitution of phenoxy groups into the s-triazinyl ring results in the appearance of an additional longer-wavelength fluorescence which is assigned to the keto tautomer, formed following excited state intramolecular proton transfer (ESIPT). The rate constant for the (ESIPT) process that occurs in sodium 3-(3′,5′-diphenoxy-2′,4′,6′-triazinyl)-4-hydroxy-2-methoxybenzene sulphonate in water is estimated to be greater than 10¹¹ s⁻¹.     

A total synthesis of (±)-isocomene and (±) β-isocomene by an intramolecular ene reaction

The racemic sesquiterpenes isocomene 1 and β-isocomene 22 have been synthesized starting from 1,7-octadien-3-one 10 in a stereoselective manner. In the key step 12 → 13 (Scheme 5) the C-7, C-8-bond was formed by an intramolecular thermal ene reaction. Further transformations of 13 (Scheme 6) involved successively ring contraction 18 → 19, elimination 21 → 22 and olefin isomerization 22 → 1.     

Asymmetric synthesis of quinolizidine alkaloids (−)-lasubine I, (−)-lasubine II and (+)-subcosine II

The enantioselective synthesis of (−)-lasubine I 1 and the first asymmetric synthesis of (−)-lasubine II 2 and (+)-subcosine II 3 is described. The key step is the intramolecular cyclization of N-acyliminium ion 4 which is derived from (S)-aminoester 6.     

Crystal structure of 3-diethylaminomethyl-2,2′-biphenol

Crystals of 3-diethylaminomethyl-2,2′-biphenol were examined using X-ray diffraction and FT-IR spectroscopy. Their space group is P2₁/c with a=7.305(1), b=13.816(2), c=29.232(4) Å, β=92.411(3)° and Z=8. The unit cell contains two symmetry-independent zwitterions. The hydrogen atom of the protonated diethylaminomethyl group is linked to the negatively charged phenolate oxygen atom, which in turn is linked to the hydroxyl group by a short hydrogen bond (molecule a: NO=2.604(3), OO=2.512(3) Å; molecule b: NO=2.593(4), OO=2.489(4) Å). The OHO⁻H⁺N bifurcated intramolecular hydrogen bonds are crystallographically asymmetric. The IR spectrum of the crystals confirms very well the results obtained by the X-ray study. Instead of continuous absorption, only broad bands are found indicating relatively low proton polarisability in the two types of intramolecular hydrogen bonds.     

Vibrational spectroscopic detection of H-bonded β- and γ-turns in cyclic peptides and glycopeptides

The conformation of N-glycoproteins and N-glycopeptides has been the subject of many spectroscopic studies over the past decades. However, except for some preliminary data, no detailed study on the vibrational spectroscopy of glycosylated peptides has been published until recently.

This paper reports FTIR spectroscopic properties in DMSO and TFE of the N-glycosylated cyclic peptides cyclo[Gly-Pro-Xxx(GlcNAc)-Gly-δ-Ava] 3a and 3b in comparison with data on the non-glycosylated parent peptides cyclo(Gly-Pro-Xxx-Gly-δ-Ava) 2a and 2b [a, Xxx = Asn; b, Xxx = Gln; δ-Ava = NH-(CH₂)₄-CO] and N-acetyl 2-acetamido-2-deoxy-β- -gluco pyranosylamine (GlcNAc-NHAc, 4). The assignment of amide I band frequencies to conformation is based on ROESY experiments and determination of the temperature coefficients in DMSO-d₆ solution. (For the synthesis and NMR characterization of 2a and 3a see Ref. [19].)

Cyclic peptides are expected to adopt folded (β- and/or γ-turn) conformations which may be fixed by intramolecular H-bonding(s). A comparison of the temperature coefficients of the NH protons and amide I band frequencies and intensities suggests that in DMSO there is no significant difference in the backbone conformation and H-bond system of the N-glycosylated models and their parent cyclic peptides. The common feature of the backbone conformation of models 2 and 3 is the predominance of a 1 ← 4 (C₁₀) H-bonded type II β-turn encompassing Pro-Xxx or Pro-Xxx(GlcNAc), respectively. The ROESY connectivities in the Asn(GlcNAc) model (3a) have not been found to reflect intramolecular H-bondings between the peptide and the sugar.

The unique feature of the FTIR spectra in DMSO of the cyclic models is the lack or weakness of low-frequency (< 1640 cm⁻¹) amide I component bands. In TFE the amide I region of the FTIR spectra shows an increased number of components below 1650 cm⁻¹ reflecting a mixture of open and H-bonded β- and γ-turn conformers.

Because of its destabilizing effect upon γ-turns and other weakly H-bonded structures, DMSO decreases the number of backbone conformers. DMSO also destroys side-chain-backbone H-bondings of type C₇, C₆ or C₈. Possible ‘glyco’ C₇ H-bondings in GlcNAc-NHAc (4) or in glycopeptides 3a and 3b cannot resist the effect of DMSO either.

The FTIR data in TFE of models 2–4 suggest that the acceptor amide group of strong C₇ H-bondings in peptides and glycopeptides absorbs at 1630 ± 5 cm⁻¹ and that of bifurcated H-bondings between 1600–1620 cm⁻¹.     

Structural and spectral studies on N-(4-chloro)benzoyl-N′-(4-tolyl)thiourea

The crystal and molecular structure of the N-(4-chloro)benzoyl-N′-(4-tolyl)thiourea (C₁₅H₁₃N₂OSCl, M_r=304.79) is determined by X-ray diffraction. The crystal structure is monoclinic, space group: P2₁/n, a=16.097(6), b=4.5989(2), c=19.388(7) Å and β=89.299(6)° V=1434.7(9)ų, Z=4. FTIR and NMR spectra have been characterized. The interactions of intramolecular and intermolecular hydrogen bonds have been discussed. Density functional theory (DFT) (B3LYP) methods have been used to determine the structure and energies of stable conformers. Minimum energy conformations are calculated as a function of the torsion angle θ (C13–N1–C14–N2) varied every 30°. The optimized geometry corresponding to crystal structure is the most stable conformation. This has partly been attributed to intramolecular hydrogen bonds. With the basis sets of the 6-311G* quality, the DFT calculated bond parameters and harmonic vibrations are predicted in a very good agreement with experimental data.     

The NICS (Nucleus-Independent Chemical Shift) as a probe of the relative stability of β-chalcogenovinylaldehydes stabilized through intramolecular chalcogen–chalcogen interactions

Density functional calculations, at the B3LYP/6-311+G(3df,2p) level, have been carried out for the complete series of β-chalcogenovinylaldehydes, CH(X)–CHCH–YH (X, Y=O, S, Se, Te), to estimate the strength of H–XY or XY–H intramolecular chalcogen–chalcogen interactions, through the use of appropriate homodesmotic reactions. For the same set of compounds the value of the nucleus-independent chemical shift (NICS), on points 1 Å above the corresponding ring critical point, has been obtained at the B3LYP/6-311+G(3df,2p) level. For non-stabilizing chalcogen–chalcogen interactions the NICS value is positive, while the opposite is found when the interaction is stabilizing. In general, there is a good linear correlation between both magnitudes and therefore, we can conclude that NICS value is a reliable probe of the strength of intramolecular chalcogen–chalcogen interactions in this set of compounds.     

Molecular and crystal structures of N,N′-propylene- and N,N′-phenylene-diylbis [3-(1-aminoethyl)-6-methyl-2H-pyran-2,4(3H)-dione]

Two macrocyclic ligands, N,N′-propylene-diylbis[3-(1-aminoethyl)-6-methyl-2H-pyran-2,4(3H)-dione] I and N,N′-phenylene-diylbis[3-(1-aminoethyl)-6-methyl-2H-pyran-2,4(3H)-dione] II, have been prepared by the condensation of dehydroacetic acid (3-acetyl-4-hydroxy-6-methyl-2H-pyran-2-one) with 1,2-phenylenediamine and 1,3-propylenediamine. They have been characterized by means of elemental analysis, IR spectroscopy as well as by X-ray crystallography. The molecular structures of the compounds I and II can be described as consisting of two β-enaminone-2-pyrone rings interlaced with either alkyl chain in I or phenyl ring in II. The X-ray studies confirmed the existence of strong N–HO intramolecular hydrogen bonds in both structures. Their lengths are in accordance to lengths of RAHB intramolecular hydrogen bonds in 1,3-diketones, aryl-hydrazones, β-enaminones and related heterodienes (2.5–2.6 Å) [P. Gilli, V. Bertolasi, V. Ferretti and G. Gilli, J. Am. Chem. Soc., 122 (2000) 10405].     

Intramolecular hydrogen bonds in crystals of thiophosphorylbenzopyrane derivatives – X-ray and FT-IR studies

The crystal structures of two new benzopyrane derivatives are analyzed and compared with previous X-ray investigations on related compounds. A particular attention is focused on intramolecular interactions. For the chromone derivatives (1 and 3) only one kind of interaction is possible, i.e., N–HO, whereas for the coumarine derivatives (2 and 4) two types of intramolecular hydrogen bonding are observed – N–HO and O–HN. Two types of H-bond for coumarine derivatives are the result of the existence of two tautomeric forms – enamine and iminoenol. Combined spectroscopic, NMR and IR measurements confirm such tautomeric equilibrium in solution. The influence of the additional intermolecular hydrogen bonds on the stabilization of tautomeric forms in crystals is also discussed here.     

State-selected dissociation of cis-HONO(Ã A″): Effect of intramolecular hydrogen bonding

The influence of intramolecular hydrogen bonding on the photodissociation of cis-HONO is probed via measurements on the OH fragment ejected by specific ---N=0 stretching (ν₂) vibrational levels of the à state. Due to hydrogen bonding between the H atom and the terminal oxygen, the ν₂ motion is coupled to the in-plane HON bend ν₃. Since the latter evolves into fragment rotation, the rotational energy and anisotropy of the OH product increases with the number of ν₂ quanta. By contrast, ν₂ in trans HONO is a relatively isolated ---N=O vibration and thus does not influence the OH photofragment's properties.     

Spectres infrarouges et structure des anions 2-methylallyle, CH3-C(CH2)2- et triméthylèneméthane, C(CH2)3

The infrared spectra of solid samples of C₄H₇K and C₄D₇K have been investigated in the 4000 to 30 cm⁻¹ range. A complete assignment of intramolecular fundamentals of C₄H₇⁻ and C₄D₇⁻ ions and of potassium-allyl vibrations is proposed and the intramolecular force constants are calculated. The C(CH₂)₃²⁻ anion has been identified spectroscopically. Structures of C₃H₅⁻, C₄H₇⁻ and C(CH₃)₃²⁻ are discussed and compared with those optimised by the MINDO/3 method.     

Fine tuning of folded conformation by change of substituents: H NMR and crystallographic evidence for folded conformation due to arene interactions in pyrazolo[3,4-d]pyrimidine core based ‘propylene linker’ compounds

Proton NMR and X-ray crystallographic analysis of two newly synthesized ‘trimethylene linker,’ (Leonard linker) compounds 1,3-bis(4-ethoxy-6-methylsulfanyl-lH-pyrazolo[3,4-d]pyrimidin-1-yl)propane (4c) and 1,3-bis(4-isopropoxy-6-methylsulfanyl-1H-pyrazolo[3,4-d]pyrimidin-1-yl)propane (4d) show intramolecularly stacked conformations both in solution and solid state. Robustness of the unusual U-motif formed due to intramolecular stacking in earlier related compounds (1, n=3 and 3, n=3) is not only confirmed but additional fine tuning is also achieved in new compounds (4) formed by replacement of remote 4-alkylsulfanyl group in 1a by 4-alkoxy substituents.     

Nanosecond and picosecond laser flash photolysis studies of 2,2′-dinitrodiphenylmethanes

The transient absorption spectra of the 2,2′-dinitrodiphenylmethanes 1a–1c in solution were examined in the picosecond and nanosecond time ranges. The absorption bands, observed at 420–450 nm on 355 nm (18 ps) excitation of these compounds, were attributed to the nitronic acids 2a–2c, formed through the singlet-state- mediated intramolecular hydrogen abstraction and the triplet states of 1a–1c. Biradical intermediates, formed through the intramolecular abstraction of the benzylic hydrogen by the triplet excited state, were detected for 1a and 1b. Transient species produced following 355 nm (approximately 6 ns) pulse excitation of 1a–1c result in the formation of the corresponding nitronic acids 2a–2c, with absorption maxima around 415–430 nm. These nitronic acids are the precursors of the various products formed in the steady state irradiation of 1a–1c     

The influence of substituents on preparation and tautomerism of open-chain β-thioketoesters Structure determination by NMR and IR spectroscopy

With special regard to the synthesis of β-thioketoesters, the acid catalysed reactions of 36 differently substituted β-keto esters with H₂S have been studied under various conditions in order to determine the influence of the substituents on reaction course. gem-Dithiols may also be obtained in good yields by this reaction. Treatment of T1(I)-salts of β-thioketo esters with alkyl halides results exclusively in S-alkylation. A slow cis-trans isomerization of S-alkylated ,β-unsaturated β-mercapto esters through rotation about the C=C double bond is demonstrated. Ethyl thioacetothionoacetate has been prepared by self-condensation of ethyl thionoacetate.

The tautomerism of the β-thioketo esters has been studied by NMR and IR spectroscopy. In the -H esters, the intramolecularly H-bonded cis-enethiol tautomer is predominant. This tautomer is also important in the -substituted esters but due to steric crowding, H-bonding occurs to the alkoxy O-atom as well as to the carbonyl O-atom; further, the trans-enethiol form appears in percentages comparable with those of the cis-enethiol form. Ethyl -isopropyl thioacetoacetate exists almost exclusively in the thione form.

¹H NMR chemical shifts and couplings of informative value for structure determination are reported and discussed. The application of the chemical shift of potentially chelated enethiolic protons as an indicator of intramolecular H-bonding is confirmed, although a general application of it (and also of corresponding proton chemical shifts in related systems) as a measure on H-bonding strength is questioned. An intramolecular H-bonding involving chlorine as acceptor atom is presented. New long-range “through bondings” couplings as well as a “through space” coupling involving enethiolic protons are also presented.     

Crystal structure of Schiff base derivative of 2,2′-dihydroxybiphenyl-3-carbaldehyde with n-butylamine

Crystals of the Schiff base derivative of 2,2′-dihydroxybiphenyl-3-carbaldehyde with n-butylamine were examined using X-ray diffraction, FT-IR and CPMAS spectroscopy. Their space group is with a=8.377(2), b=12.214(2), c=14.774(3) Å, =76.62(3)°, β=81.34(3)°, γ=86.62(3)° and Z=4. The unit cell contains two symmetry-independent zwitterions. The hydrogen atom of the protonated N atom of the Schiff base is linked to the oxygen atom of the carbonyl group at position 2, which in turn is linked to the hydroxyl group by a short hydrogen bond [molecule A: NO=2.614(3), OO=2.520(3) Å; molecule B: NO=2.594(4), OO=2.526(3) Å]. The OHO⁻H⁺N bifurcated intramolecular hydrogen bonds are crystallographically asymmetric. The results of the FT-IR, ¹H, ¹³C, ¹⁵N NMR and CPMAS study of the crystals are in agreement with the X-ray data. Instead of a continuous absorption, only a broad band is found indicating relatively low proton polarizability in the two types of the cooperative relatively short intramolecular hydrogen bonds. The ¹⁵N NMR chemical shift indicates the protonation of the Schiff base.     

Photophysical properties of β-(1-pyrenyl)ethyl p-cyanobenzoate in binary solvents of isooctane-ethyl acetate and ethyl acetate-acetonitrile

The effects of solvent polarity on the fluorescence spectra and fluorescence decays of β-(1-pyrenyl)ethyl p-cyanobenzoate (P2CN) were investigated in detail using binary solvents consisting of various mixing ratios of isooctane-ethyl acetate or ethyl acetate-acetonitrile (dielectric constants ()=1.94–36.2). Whereas both the intensity and wavelength maxima of an intramolecular exciplex emission (EX) are dependent on the solvent polarity, only the intensity of an emission from the locally excited pyrene (LE) is dependent on the solvents used. When monitored at 377 nm, the picosecond SPC (single photon counting) measurements reveal a slow decay (>150 ns) in addition to a fast decay (<1 ns) of the locally excited P2CN. There are also two decays for the EX which vary the intensity ratios by the monitored wavelength. The decay rate constants, k_EX1 and k_EX2, have a good linear correlation with the dielectric constants of the solvents, indicating that there exist two kinds of exciplexes. It is suggested that the decays of the locally excited-state of P2CN are so fast due to result of the efficient electron transfer that the two kinds of intramolecular exciplexes are formed from the two discrete conformers in the ground state.