Synthesis and Characterization of Iron(III) Complexes of 5‐(8‐Carboxy‐1‐naphthyl)‐10, 15, 20‐tritolyl Porphyrin

5‐(8‐Carboxy‐1‐naphthyl)‐10, 5, 20‐tritolyl porphyrin (H₃CNTTP) and its iron(III) complexes, [Fe(CNTTP)]₂ and [Fe(CNTTP)(N‐MeIm)₂], were synthesized and characterized. X‐ray crystallography revealed that the carboxylate group is “hanging” over the porphyrin plane. The rigid framework makes the distance between the carboxylate oxygen and iron in the same porphyrin too long to form a coordination bond. On the other hand, the carboxylate group is not bulky enough to block the axial binding site. In the presence of OH^–, the carboxylate oxygen is coordinated to iron in the symmetry‐related unit, which led to the dimeric structure, [Fe(CNTTP)]₂. In the presence of excess N‐methylimidazole, a six‐coordinate species, [Fe(CNTTP)(N‐MeIm)₂], was obtained. In such a structure, CH ··· O interactions between the carboxylate group and imidazole probably play an important role to determine the orientation of imidazole plane. Two imidazole planes have relative parallel orientation. For [Fe(CNTTP)(N‐MeIm)₂], ¹H NMR shows pyrrole protons at the region –10 to –25 ppm. EPR shows rhombic spectrum. Those suggest [Fe(CNTTP)(N‐MeIm)₂] is a type II low‐spin iron(III) porphyrinate.     

17O, 13C and 1H NMR and IR spectral study of crowded ketones: possible intramolecular C—H···O interactions

Unusual behaviour was observed in the study of the ¹⁷O, ¹³C and ¹H NMR and IR spectra of crowded (1‐adamantyl)alkyl ketones. As the size of the alkyl substituent is increased, abnormal upfield chemical shifts in the ¹³C NMR and downfield shifts in the ¹⁷O NMR of the carbonyl group, as well as downfield shifts in the ¹H NMR of the adamantyl γ'‐protons, are found. In the IR spectrum, the ν_C?O stretching frequencies of the ketones with bulky substituents show considerable red shifts. Correlation of the NMR shifts with the number of γ‐carbon atoms of the alkyl substituents and comparison with the IR results indicated that there is an intramolecular through‐space CH···O interaction in crowded ketones. This was supported by the results of ab initio calculations. Copyright © 2002 John Wiley & Sons, Ltd.     

Influence of substitution on the strength and nature of CH···N hydrogen bond in XCCH···NH3 complexes

The effect of substitution on the strength and nature of CH···N hydrogen bond in XCCH···NH₃ (X = F, Cl, Br, OH, H, Me) and NCH···NH₃ complexes were investigated by quantum chemical calculations. Ab initio calculations were performed using MP2 method with a wide range of basis sets. With tacking into account the BSSE and ZPVE, the values of BEs decrease. Replacement of the nonparticipatory hydrogen atom of HCCH by the electronegative atoms (F, Cl, and Br), lead to the BEs increases. The BE corresponding to the replacement of the nonparticipatory hydrogen atom of HCCH by the OH and CH₃ groups decreases. A far greater enhancement of the interaction energy arises from replacement of HCCH by the more acidic HCN. The natural bond orbital analysis and the Bader's quantum theory of atoms in molecules were also used to elucidate the interaction characteristics of these complexes. The electrostatic nature of H‐bond interactions is predicted from QTAIM analysis. In addition, the relationship between the isotropic and anisotropic chemical shifts of the bridging hydrogen and binding energy of complexes as well as electron density at N···H BCPs were investigated. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Homomeric Inclusion and Hydrogen‐Bonding Cooperatively Directed Crystalline Assembly of a Cyclotriguaiacylene Derivative with Different Aromatic Acids

Five organic complexes are prepared by cocrystallization of tri‐[(N‐methyl‐2‐imidazoly)methoxy]cyclotriguiacylene (TMIM‐CTG) with corresponding acids. While hydrogen bonds are the basic interactions in the five complexes, the homo‐included motifs with C? H···π interactions also control the molecular arrangement except for complex 5 . In complex 1 , the two dimensional networks contain 1D zigzag chains formed by hydrogen bonding and 1D chains of homo‐included CTG motifs. Complex 2 has 2D 4·8² hydrogen bonding networks, and the chains of homomeric inclusion extend the 2D structure to a 3D framework. Complex 3 contains four‐membered rings through hydrogen bonds, and the chains of homo‐inclusion link the rings to a novel 2D network. In complex 4 , hydrogen bonds construct a novel double‐layer 2D network, which is extended to a 3D framework by "hand‐shake" dimeric homomeric inclusion interactions. Interestingly, there is no homomeric inclusion phenomenon in complex 5 and hydrogen bonds solely connect two components to a chiral (6,3) 2D network.     

Preparation,Structure, Spectral,and Magnetic Properties of Copper(II) Halogenonicotinates: Crystal and Molecular Structure of Tetrakis(μ‐2‐chloronicotinato‐O,O′)‐diaquadicopper(II)

The characterization of the complexes [Cu₂(2‐Clnic)₄(H₂O)₂] ( 1 ), [Cu(2,6‐Cl₂nic)₂(H₂O)₂] ( 2 ) and [Cu(5‐Brnic)₂(H₂O)₂]_n ( 3 ) (where 2‐Clnic = 2‐chloronicotinate, 2,6‐Cl₂nic = 2,6‐dichloronicotinate or 5‐Brnic = 5‐bromonicotinate) was based on elemental analysis, IR, electronic and EPR spectra, and magnetic susceptibility. Complex 1 was also studied by X‐ray analysis at 298 1a and 80 K 1b . The complex 1 contains a dinuclear Cu‐acetate molecular structure in which the carboxyl groups of the 2‐chloronicotinate ligands act as bridges and water molecules are at apical positions. The stereochemistry about Cu atom at both temperatures is typical for square pyramidal geometry with CuO₄O chromophore. The Cu‐Cu distance is 2.6513(8) and 2.6382(6) Å for 1a and 1b , respectively. The Cu atoms are displaced by 0.2069(9) and 0.1973(7) Å, respectively, from the plane containing four oxygen atoms bonded to the Cu atom toward the apical water molecules. Strong and weak hydrogen bonds as well as C–Cl···π interactions in the crystal structure are discussed as well. Both complexes, monomeric [Cu(2,6‐Cl₂nic)₂(H₂O)₂] ( 2 ) and polymeric [Cu(5‐Brnic)₂(H₂O)₂]_n ( 3 ), possess octahedral copper(II) stereochemistry with differing tetragonal distortions.     

Dimeric Sandwich‐like Ion Pairs in the Crystal Structure of Tetrabutylammonium Ozonide Ammoniate

The novel ionic ozonide {[N(C₄H₉)₄](O₃)}₄·4.75NH₃ was synthesized by ion‐exchange reaction in liquid ammonia. The crystal structure was determined by single crystal diffraction at 100 K (monoclinic space group P2₁, a = 15.014(11) Å, b = 13.696(10) Å, c = 19.890(15) Å, β = 105.407(12)°, V = 3943(5) ų, Z = 2). The structure consists of a packing of sandwich‐like dimeric ion pairs in which two ozonide anions are interspersed between two tetrabutylammonium cations. Ammonia molecules from the solvent are localized in cavities in the structure. They are involved in hydrogen bonding with the ozonide ions. The desolvated tetrabutylammonium ozonide forms stable solutions in dichloromethane which may open up novel possibilities of tapping into the synthetic potential of the ozonide ion.     

A computational study of the LiH dimer

A theoretical study of the properties of the linear LiH dimer was undertaken. In this dimer, an unusual type of hydrogen bonding (termed "inverse" hydrogen bonding by some authors), which involves the hydrogen bonded molecule acting as an electron donor (rather than as a proton donor), is exhibited. The optimized geometry, dipole moment, interaction energy, atomic charges, harmonic vibrational frequencies, and frequency shifts for the dimer are computed at the SCF, MP2, and QCISD levels of theory using mainly a 6-31++G(d,p) basis set. We also examined the relative stability of the mono-deuterated isotopomers of linear (LiH)(2), i.e., Li-H...Li-D and Li-D...Li-H. Analysis of the normal vibrational modes, changes in the partial atomic charges, and changes in the vibrational frequencies of LiH on complexation were used to gain insight into the bonding and properties of the linear LiH dimer and its isotopomers.     

Supramolecular Networks Extended by N–H···O Interactions between Cu‐Benzimidazole Subunits and Keggin Anions

Three new 2D/3D supramolecular architectures derived from Cu‐organic subunits and Keggin anions, [Cu^II₂(biz)₈(HPMo^VI₁₀Mo^V₂O₄₀)(H₂O)₂] · 2H₂O ( 1 ), [Cu^I₄(biz)₈(SiW₁₂O₄₀)] · 2H₂O ( 2 ) and [Cu^I₂(dmbiz)₄(Hdmbiz)₂(SiW₁₂O₄₀)] ( 3 ) (biz = benzimidazole, dmbiz = 5, 6‐dimethyl benzimidazole), were obtained under hydrothermal conditions. Single crystal X‐ray diffraction analysis reveals that compound 1 has two kinds of [Cu^II(biz)₂]²⁺ cations, which are further extended by Keggin anions into a 2D (4, 8)‐connected supramolecular network by hydrogen bonding interactions. In compound 2 , four types of [Cu^I(biz)₂]⁺ subunits link the [SiW₁₂O₄₀]^4– anions to form a 3D (2, 6)‐connected supramolecular structure. Compound 3 shows a 3D supramolecular network with a NaCl‐type topology constructed by [Cu^I(dmbiz)₂]⁺ subunits, anions, and discrete [Hdmbiz]⁺ cations. Moreover, the electrochemical and photocatalytic properties of compounds 1 and 2 were investigated.     

Interaction between ions and substituted buckybowls: A comprehensive computational study

Complexes formed by substituted buckybowls derived from corannulene and sumanene with sodium cation or chloride anion have been computationally studied by using a variety of methods. Best results have been obtained with the SCS‐MP2 method extrapolated to basis set limit, which reproduces the highest‐level values obtained with the MP2.X method. All bowls form stable complexes with chloride anion, with stabilities ranging from ?6 kcal/mol in the methylated corannulene derivative to ?45 kcal/mol in the CN‐substituted sumanene. The opposite trend is observed in sodium complexes, going from deeply attractive complexes with the methylated derivatives (?36 kcal/mol with sumanene derivative) to slightly repulsive ones in the CN‐substituted bowls (2 kcal/mol in the corannulene derivative). Anion complexes are stabilized by large electrostatic interactions combined with smaller though significant dispersion and induction contributions. Conversely, cation complexes are stabilized by large induction contributions capable of holding together the bowl and the cation even in cases where the electrostatic interaction is repulsive. The effect of substitution is mainly reflected on changes in the molecular electrostatic potential of the bowl and, thus, in the electrostatic contribution to the interaction. Therefore, the variations in the stability of the complexes on substitution could be roughly predicted just considering the changes in the electrostatic interaction. However, other contributions also register changes mainly as a consequence of displacements on the position of the ion at the minimum, so the accurate prediction of the stability of this kind of complexes requires going further than the electrostatic approach. © 2014 Wiley Periodicals, Inc.     

A d10 Metal Coordination Polymer Containing a Thiodiphthalic Ligand: Crystal Structure and Luminescent Property

A new two‐dimensional metal‐organic coordination polymer [Cd₂(2,3,2′,3′‐sdpa)(H₂O)₃] · 2H₂O ( 1 ) were hydro(solvo)thermally synthesized by the reaction of 2,3,2′,3′‐sulfonyldiphthalic acid (2,3,2′,3′‐H₄sdpa) with Cd(NO₃)₂ · 4H₂O and characterized by elemental analysis, thermogravimetry, IR and luminescence spectroscopy, and X‐ray diffraction. In complex 1 , two kinds of cadmium atoms are linked together by anionic sdpa^4– ligands to form a 2D metal‐organic network. The adjacent 2D layers further interact with each other through hydrogen bonds and π ··· π interactions to form a 3D supramolecular structure. The luminescence spectra and thermal properties of 1 were also investigated.     

Cu(OAc)2·H2O/NH2OH·HCl/CH3COONa: A Facile and Efficient Catalyst System for Copper‐catalyzed Azide–Alkyne Click Reactions in Water

A facile and efficient protocol has been developed for synthesis of 1,4‐disubstituted 1,2,3‐triazoles in good to excellent yields using Cu(OAc)₂·H₂O (0.5 mol%)/NH₂OH·HCl (0.5 mol%)/CH₃COONa (1.0 mol%) as the catalyst system. The presence of CH₃COONa (2 equiv) could ensure the in situ generation of Cu₂O as the active catalyst instead of CuCl from Cu(OAc)₂·H₂O (1 equiv)/NH₂OH·HCl (1 equiv). This protocol could be carried out in water under mild conditions.     

Insight into the π‐hole···π‐electrons tetrel bonds between F2ZO (Z = C,Si, Ge) and unsaturated hydrocarbons

The intermolecular π‐hole···π‐electrons interactions between F₂ZO (Z = C, Si, Ge) molecules and unsaturated hydrocarbons including acetylene, ethylene, 1,3‐butadiene and benzene were constructed to reveal the differences of tetrel bonds forming by carbon and heavier tetrel atoms. The ab initio computation in association with topological analysis of electron density, natural bond orbital, and energy decomposition analysis demonstrate that the strength of Si···π and Ge···π tetrel bonds is much stronger than that of C···π tetrel bonds. The Si···π and Ge···π tetrel bonds exhibit covalent or partially covalent interaction nature, while the weak C···π tetrel bonds display the hallmarks of noncovalent interaction, the electrostatic interaction is the primary influencing factor. The Si···π and Ge···π interactions are determined by both the σ‐ and π‐electron densities, while the C···π interactions are dominated mainly by the π‐electron densities. The π‐hole···π‐electrons tetrel bonds are dominated by electrostatic interaction, and polarization has a comparable contribution in the Si···π and Ge···π tetrel bonds.     

Octahedral and Cyclic [Ag6] Cluster Cores Stabilized by {Ag3(Spz)3(N‐triphos)3} Motifs [HSpz = Pyrazine‐2‐thiolate,N‐triphos = Tris((diphenylphosphanyl)methyl)amine]: Ag···Ag Interactions

The complexes [Ag₁₂(Spz)₁₂(N‐triphos)₂][Ag₃(Spz)₃(N‐triphos)]₂ · (DMF)₆ ( 1 ) and [Ag₁₈(Spz)₁₂(N‐triphos)₄(CF₃CO₂)₆] ( 2 ) were synthesized and structurally characterized by X‐ray diffraction [HSpz = pyrazine‐2‐thiolate, N‐triphos = tris((diphenylphosphanyl)methyl)amine]. The central [Ag₆] ring with chair‐conformation in 1 and the ideally octahedral [Ag₆] cluster core in 2 are both stabilized by the tripodal building units of neutral [Ag₃(Spz)₃(N‐triphos)] compound. The Ag ··· Ag distances of the [Ag₆] moieties in 1 and 2 are 3.07 and 2.81 Å, respectively, exhibiting intermetallic interactions, which can enhance the stability of [Ag₆] conformations. In addition, the π ··· π interactions between parallel pyrazine rings could impose on the building and the Ag ··· Ag interactions of these Ag–S clusters.     

Synthesis,Spectroscopy and Crystal Structures of Chiral Organic Ammonium Tetrathiometalates Showing N‐H···S and C‐H···S Interactions

The reaction of ammonium tetrathiometalate (NH₄)₂[MS₄] (M = W or Mo) with the R(+) or S(?) forms of the organic amine α‐methylbenzylamine [PhCH(CH₃)NH₂] results in the formation of the corresponding non‐centrosymmetric bis(α‐methylbenzylammonium) tetrathiometalate complexes [PhCH(CH₃)NH₃]₂[MS₄] (R‐ammonium M = W 1 ; R‐ammonium M = Mo 2 ; S‐ammonium M = W 3 , S‐ammonium M = Mo 4 ) which were characterized by elemental analysis, IR, Raman, UV‐Vis and CD spectra, X‐ray powder diffractometry and single crystal X‐ray crystallography. Compounds 1 ‐ 4 crystallize in the chiral space group P2₁ and constitute the first examples of structurally characterized chiral organic ammonium group VI tetrathiometalates. The structures of 1 ‐ 4 consist of two crystallographically independent chiral organic ammonium cations and a tetrahedral tetrathiometalate dianion. The N‐H···S and C‐H···S interactions between the anions and cations organise them such that the organic ammonium ions always point towards the S atoms of [MS₄]^2?.     

Influence of dicarboxylic acids on self-assembly process: Syntheses and structural characterization of new Ag(I) complexes derived from mixed ligands

Using the principle of crystal engineering, three new silver metal–organic coordination polymers, [Ag₂(L1)₂(L2)]·2H₂O (1), [Ag₂(L1)₂(L3)]·H₂O (2), [Ag₂(L1)₂(L4)]·2H₂O (3) (L1 = 2-aminopyrimidine, L2 = oxalate anion, L3 = glutarate anion and L4 = 1,4-naphthalenedicarboxylate anion) have been synthesized by solution phase reactions of silver nitrate with various dicarboxylic acids and cooperative heterocyclic 2-aminopyrimidine ligand under the ammoniacal conditions. All the complexes have been characterized by elemental analyses, IR spectra and X-ray diffraction. In complex 1, L1 ligands are coordinated to Ag(I) metal centers in rare tridentate fashions, forming one-dimensional (1-D) ladder-like structure, which is interlinked by L2 anions to generate 2-D pleated molecular sheet. Complex 2 displays an interesting two-dimensional (2-D) tongue-and-groove structure containing a new kind of “T-shaped” unit. Meanwhile, each of 2-D bilayers is interlocked by four adjacent identical motifs to form three-dimensional (3-D) 5-fold interpenetrating conformation with weak Ag···Ag interactions. In complex 3, L1 ligands are coordinated to the Ag(I) ions to form 1-D polymeric chain. And L4 anions, acting as bridging linkers through corresponding μ²-carboxylates, link a pair of Ag(I) atoms from adjacent chains to yield 3-D supramolecular network. The structures of complexes 1–3 which span from 2-D to 3-D networks suggest that dicarboxylate anions play important role in the formation of such coordination architectures.     

Performance of density functional theory on the anisotropic halogen···halogen interactions and potential energy surface: Problems and possible solutions

The noncovalent halogen···halogen (X···X) interaction, which shows significant anisotropic feature, is extensively used in rationally designing supramolecular assemblies. Here, beyond the binding energy of stable geometries, the anisotropic topology of the potential energy surface (PES) is explored. We show that most functionals of DFT give remarkably unphysical angular distortion of the PES. This is unlikely to be solved unless the components that ensure correct angular dependent behavior in the halogen bonding region are contained in the functionals. We also prove that simple empirical corrections may substantially quantify this unphysical angular distortion, and further investigation is recommended. These findings constitute a step forward toward the understanding of the nature of X···X bonds, and provide some insights for the future designing of the state‐of‐art theoretical methods. © 2016 Wiley Periodicals, Inc.