Attaching tweezers like ionophore to a proton crane: theoretical design of new tautomeric sensors

ABSTRACT

The tautomeric optical sensors based on 4-(phenyldiazenyl)naphthalen-1-ol exist in their pure enol tautomeric form as free ligands, while the addition of metal ion fully shifts the equilibrium towards the keto tautomer allowing a red shift in the measured absorbance. This effect is achieved when a side ionophore group is connected to a tautomeric backbone by a spacer in a way that stabilizes the enol form via hydrogen boding. When the ionophore captures the metal ion the keto form is stabilized due to C─O tautomeric group participation in the complex. In the current study, we model theoretically the effect of symmetric tweezer like ionophores (RCOXCOR, where X, being CH or N, is the linker to the tautomeric backbone) on the tautomeric state and complexation ability of 4-(phenyldiazenyl)naphthalen-1-ol containing ligands. It was found that enol form stabilisation is achieved when R?=?NMe₂, independing on the linker. Both ligands are unsuitable for capturing alkali metal ions. The calculations predict that the complexation with alkali earth metal ions could lead to a full shift of the tautomeric equilibrium towards keto tautomer.     

Selective Esterification of Gossypol by Copper Acetate in Acetonitrile-Spectroscopic Studies

Gossypol and its 1: 1 complexes with copper acetate in acetonitrile were studied by FTIR and UV-visible spectroscopy. With the complexation with Cu cation the tautomeric equilibrium of gossypol is completely shifted from the aldehyde-aldehyde to the lactol-lactol tautomer. The acidic character of O₁₁H group in the gossypol-Cu complex led to the selective esterification of the lactol form of gossypol by the acetate group.     

Synthesis and spectroscopic investigation of a novel solvatochromic dye

Optical response of a novel dye has been studied in various media like neat and mixed binary solvents, aqueous SDS micelles and β-cyclodextrin (β-CD) nanocavities. Fluorescence parameters in pure and mixed binary solvents have been found to be sensitive to the nature of the microenvironment. The emitting state of the dye in protic solvent is different from that in aprotic solvents. In presence of cations (H⁺, Mg²⁺), the dye exists in two tautomeric forms at equilibrium in solution. The values of the equilibrium constant (K) and ΔH⁰ have been measured. Values of local dielectric constant (ε) and microviscosity (η) at the region of solubilisation of the dye in aqueous SDS micellar media have been found out. The dye has also been found to form complex with β-CD. The equilibrium constant and the energy of maximum fluorescence of the dye encapsulated by β-CD have been determined.     

Percolation on patchwise heterogeneous surfaces under equilibrium conditions

The site percolation problem on square lattices whose sites are grouped in two types of energetically different patches is studied. Several lattices formed by collections of either randomly or orderly localized and no overlapped patches of different sizes are generated. The system is characterized by two parameters, namely, the size of each patch, l, and the energy difference between the two kind of sites, ΔE. Particles are adsorbed at equilibrium on the lattice. The critical coverage is determined by means of Monte Carlo simulations and finite-size scaling analysis. The percolative behavior of the system as a function of the parameters characterizing the heterogeneity of the energetic surface topography is presented and discussed.     

An integrated approach to the study of the tautomerism of 4‐((Phenylimino)methyl) naphthalene‐1‐ol

The aim of the current report is to shed light on the tautomerism of 4‐((Phenylimino)methyl) naphthalene‐1‐ol in solution, which was studied by UV–Vis spectroscopy and quantum chemical calculations. It was found that this compound does not have the typical tautomeric behavior of its analog 4‐Phenylazo‐naphthalen‐1‐ol. The complicated equilibrium between the enol‐ and keto‐like forms and two kinds of dimers that can exist in solution, is strongly dependent on the proton acceptor/donor abilities of the solvent. Using advanced data treatment quantitative information about the tautomeric and dimeric equilibrium constants was obtained. Copyright © 2007 John Wiley & Sons, Ltd.     

Dynamic1H,13C,31P NMR spectroscopy of the crown containing N-(thio)phosphoryl(thio)urea

The variable temperature and concentration¹H,¹³C,³¹P NMR spectroscopy of the N,N′-bis[diisopropoxy(thio)phosphorylamido-(thio)carbonyl]-1,10-diaza-18-crown-6 containing the reaction pentade C(X)NHP(Y) and stereononrigid macrocycle in solutions (CD₂CL₂, CD₃CN, (CD₃)₂CO as solvent) was studied. The complex chemical exchange is described in terms of tautomeric processes, hindered rotation around C-N bond and macrocycle ring inversion. NMR spectral parameters (chemical shifts and spin-spin coupling constants) of the observed exchange partners as well as thermodynamic parameters of the equilibrium and transition between tautomeric and conformational forms are given.     

Tautomerization and solvent effects on the absorption and emission properties of the Schiff base N,N′-bis(salicylidene)-p-phenylenediamine – A TDDFT study

Time-dependent density functional theory combined with a polarized continuum model has been applied to study solvent effects on the geometrical and energetic properties, as well as the absorption and emission properties, of three tautomeric forms of N,N′-bis(salicylidene)-p-phenylenediamine (BSP). The calculated properties are in agreement with the available experimental data. It was observed that the solvent environment does not affect the vertical excitation energies significantly, whereas tautomerization strongly affects both the absorption and emission spectra of BSP.     

高能俘获粒子对内扭曲模的稳定效应

用Greene,Johnson和Weimer的方法重新推导了各向异性托卡马克等离子体中的Grad-Shafranov平衡方程。从广义能量原理分析了各向异性高能粒子分量对托卡马克等离子体内扭曲模的稳定作用,并以能量慢化分布和压力随方位角变化基本呈方形的两种高能粒子分布为例仔细计算了此作用,找出了迴转点在强场一侧的高能俘获粒子对托卡马克等离子体内扭曲模的稳定窗口,并深入讨论了它与各物理参数的依赖关系。 关键词：     

Rb2TeW3O12电子结构及光学性质的第一性原理研究

采用平面波超软赝势法对Rb2TeW3O12基态的几何结构、能带结构和光学特性等进行了系统的研究.几何结构研究不仅对基态平衡时的几何参量进行了优化计算，还对内部坐 标做了优化，其结果和实验测量值符合得很好.电子结构的研究表明，Rb2TeW3O12 属于宽禁带直接带隙半导体，禁带宽度为223eV，W 5d和O 2p轨道之间强烈杂化形成W— O共价键.计算了光学性质，给出了Rb2TeW3O12的介电函数实部ε1、虚部ε 2及相关光学参量，理论计算的静态介电常数为529 关键词： Rb2TeW3O12 电子结构 介电函数 密度泛函理论     

Effect of aqueous solvation on the structures of pyruvic acid isomers and their reactions in solution: a computational study

The pyruvic acid molecule and its various isomers have been studied in aqueous solution in order to understand the mechanism of decarboxylation. The tautomeric equilibrium remains in favor of the keto form in aqueous solution, but the energy difference between the two tautomers decreases. The anion also exists in the keto form in aqueous solution. Good agreement between the calculated and observed gas phase protonation and basicity values is obtained, and the calculated pK_a value is also in reasonable agreement with the literature value. The importance of the catalytic mechanism may be gauged from the fact that, in the absence of an enzymatic pathway, the reaction has high activation barrier and may not occur at all. Copyright © 2007 John Wiley & Sons, Ltd.     

1H NMR investigation of the hetero-association of aromatic molecules in aqueous solution: factors involved in the stabilization of complexes of daunomycin and acridine drugs

Hetero-association of the anthracycline drug, daunomycin (DAU), with typical mutagens, the acridine dyes proflavine (PF) and acridine orange (AO), has been studied by 500 MHz ¹H NMR spectroscopy as a function of concentration and temperature in 0.1 mol dm^?3 phosphate buffered aqueous solutions at pD = 7.1. The results have been analysed in terms of a statistical-thermodynamical model of hetero-association of aromatic molecules, described previously [Davies, D. B., Veselkov, D. A., and Veselkov, A. N., 1999, Molec. Phys., 97, 439], but generalized in this work, so that there is no limitation on the magnitudes of the self-association constants of the interacting molecules. Expressions suitable for the analysis of NMR parameters of both components in the mixed solution have been developed enabling both the structural and thermodynamic properties of hetero-association to be determined. The magnitude of the equilibrium constant for hetero-association of PF + DAU is found to be substantially higher than the self-association constants of these molecules, whereas that for hetero-association of AO + DAU is intermediate between the equilibrium constants of self-association of AO and DAU. Intermolecular cross-peaks observed in 2D-ROESY spectra of PF + DAU mixed solutions are consistent with formation of a hetero-association complex in which an intermolecular hydrogen bond can form between either of the 3,6-diamino groups of the PF chromophore and the 9-MeCO group of DAU, which is in contrast to AO + DAU hetero-association, where such hydrogen bonds are unable to form. Quantitative structural and thermodynamical analysis of PF + DAU complexation is consistent with an intermolecular hydrogen bond contributing to the stability of the hetero-complex in aqueous solution. The NMR results show that hydrophobic interactions play a substantial role in the stabilization of the AO-DAU complex, characterized by a relatively small entropy change on complexation, compared to the PF-DAU hetero-complex, which is mainly stabilized by hydrogen bond and dispersive van der Waals interactions.     

Computational Studies on the Ground State Tautomer,Hydrogen Conformations and Vibrational Spectroscopic Analysis of Antitumor Agents:3-Deazauracil and 6-Azauracil

The ground state hydrogen conformations and vibrational analysis of 3-deazauracil (3DAU) and 6-azauracil (6AU) tautomers (4-enol and 2,4-diol forms) have been calculated using ab initio Hartree-Fock (HF) and density functional theory (B3LYP) methods with 6-311++G(d,p) basis set level. The calculations have shown that the most probably preferential tautomer of 3DAU and 6AU are the 4-enol form, which gives best fit to the corresponding experimental data. The ground state conformer of the 2,4-diol form has two O-H bonds which are oriented externally and internally (to the N-H bond). The vibrational analyses of the ground state conformer of each tautomeric form of 3DAU and 6AU were done and their optimized geometry parameters (bond lengths and bond angles) were given. Furthermore, from the correlations values it was concluded that the B3LYP method is superior to the HF method for both the vibrational frequencies and the geometric parameters.     

Beschleunigung von Elektronen in einem Plasmabetatron

A plasma was produced by a high frequency electric quadrupole field (v=200 Megacycles) at gas pressures of 10^?4 to 5·10^?3 mm Hg in a quarz glass torus. The torus was placed between the poles of an air-core betatron with the following properties: radius of equilibrium orbit 20 cm, maximum accelerating field strength 80 V/cm, end energy 1.5 MeV. Associated with conduction currents of some 100 A, energetic Bremsstrahlung was observed and attributed to 1,2 MeV electrons. The number of accelerated electrons was of the order of 10¹¹ per pulse. The intensity and energy of the radiation, together with the time dependence of the plasma current, were observed as function of different parameters, such as the gas pressure, high frequency amplitude, induced acceleration field strength, for different gases. The energetic radiation disappears when, because of the self-induced magnetic field, the stability condition for the betatron equilibrium is no longer fulfilled.     

Complexation of heterocyclic ligands with DNA in aqueous solution

We have used spectrophotometry to study self-association and complexation with DNA by organic heterocyclic compounds in the acridine and phenothiazine series: proflavin, thionine, and methylene blue. Based on the experimental concentration dependences of the molar absorption coefficient of the molecules in an aqueous buffer solution (0.01 M NaCl, 0.01 M Na₂EDTA, 0.01 M Tris, pH 7.4, T = 298 K), we have determined the equilibrium dimerization constants for the dyes and the DNA complexation parameters using the Scatchard and McGhee-von Hippel models. The observed increase in the cooperativity parameters as the dimerization constants of the ligands increase allowed us to hypothesize that the same interactions occur between dye molecules adsorbed on DNA as in their self-association. The equilibrium DNA-binding constants for the ligands, obtained using the McGhee-von Hippel cooperative model, are (20.9 ± 2.7)·10³ M⁻¹ for proflavin and (33.8 ± 4.1)·10³ M⁻¹ for thionine. Using the Scatchard model, taking into account intercalation and “external” binding of ligands with DNA, we determined the DNA complexation constants for methylene blue: (26.4 ± 4.6)·10³ and (96 ± 17)·10³ M⁻¹ respectively. Based on analysis of the data obtained, we hypothesized that the predominant type of binding with DNA is intercalation binding in the case of proflavin and thionine, and “external” binding with the DNA surface in the case of methylene blue. __________ Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 75, No. 2, pp. 242–249, March–April, 2008.     

A simulated colorimetric INHIBIT logic gate based on 2-(2-thiazolylazo)-p-cresol

ABSTRACT

2-(2-Thiazolylazo)-p-cresol system achieved distinct optical output signal by controlling pH and mercury-ion complexation. The 2-(2-thiazolylazo)-p-cresol with mercury ion existed as an equilibrium mixture of both an azo and hydrazone tautomeric forms at 372 and 425?nm, respectively, along with the appearance of a new absorption peak at 610?nm (visual color of green), which was attributed to the binding of mercury ion with 2-(2-thiazolylazo)-p-cresol. Furthermore, the addition of proton led to the perturbation of the conjugation between 2-(2-thiazolylazo)-p-cresol and mercury ion and absence of absorption at 610?nm (visual color of yellow). 2-(2-thiazolylazo)-p-cresol could thus be applied to develop an effective simulated colorimetric INHIBIT logic gate with mercury ion and proton as inputs. Consequently, green color with the absorption peak at 610?nm was outputted from yellow color of 2-(2-thiazolylazo)-p-cresol in the presence of mercury ion as an input signal at pH 7.0.     

A multinuclear magnetic resonance study of intramolecular hydrogen bonding in some Schiff and Schiff-Mannich bases in solution and in the solid state

Two Schiff bases; N, N′-bis(5-bromosalicylidene)-1,2-diaminoethane, BS, and 7-[(1-{5-bromo-2-hydroxyphenyl} methylidene)amino]-4-methylcoumarin, Sc, and two appropriate Schiff–Mannich bases, N, N′-bis{5-bromo-3-[(diethylamino)methyl]salicylidene}-1,2-diaminoethane, BSM, and 7-[(1-{5-bromo-3-[(diethylamino)methyl]-2-hydroxyphenyl} methylidene)amino]-4-methylcoumarin, SMc, capable of intramolecular hydrogen bonding have been investigated by multinuclear magnetic resonance methods in both solid and liquid phases. In all of the compounds under investigation tautomeric equilibrium involving an intramolecular hydrogen bond has been found. The Schiff–Mannich bases, which can form two different kinds of H bonds at room temperature, form relatively weak H bonds with the imino nitrogen atoms. At low temperatures the tautomeric proton exchange becomes slow on the NMR time scale and both hydrogen-bonded forms can be observed by ¹H, ¹³C, and ¹⁵N NMR methods. In the solid state the tautomeric process is frozen and only one H-bonded form is present. On the basis of 13C and ¹⁵N CPMAS NMR spectra this is identified as the form with hydrogen bonds involving the imino groups. This conclusion is in good agreement with previous results obtained by X-ray diffraction methods.

The investigated Schiff bases (BS and Sc) form relatively weak H bonds. The proton position in the hydrogen bridge, estimated from ¹⁵N and ¹³C chemical shifts, is very similar in both the solution and solid phases. In chloroform solution the observed tautomeric equilibria are almost insensitive to a temperature change within the range 223 to 303 K.     

Sorption and diffusion behaviours of strontium in sodium-type bentonite bed

Sorption and diffusion of Sr were examined using a typical Japanese bentonite. The experimental results showed that Sr sorption on the bentonite had linear relationship between the equilibrium Sr concentration and Sr sorption amount, i.e., Henry’s type of sorption, in wide initial Sr concentration from 1.1 × 10^?9 to 1.1 × 10^?4 mol L^?1 at pH 10. The Sr sorption also indicated pH dependence in pH range between 2 and 12. Sorption modelling calculation indicated that cation-exchange reactions contributed to Sr sorption in the pH range studied and a surface complexation reaction was predominant above pH 8. Diffusion of Sr in loosely compacted bentonite bed was described by pore and surface diffusion and surface complexation of Sr. Chemical-transport calculations reproduce the diffusion data at pH 5 using the cation-exchange parameters obtained in the analysis of the batch sorption experiment.     

A theoretical study of Fe adsorption along Bi-nanolines on the H/Si(0 0 1) surface

We have investigated the energetic stability and equilibrium geometry of the adsorption of transition metal Fe atoms near the self-organized Bi lines on hydrogen passivated Si(0 0 1) surface. Our total energy results show that there is an attractive interaction between Fe adatoms along the Bi-nanolines. For the energetically most stable configuration, the Fe adatoms are seven-fold coordinated, occupying the subsurface interstitial sites aside the Bi-nanolines. With increased coverage, Fe atoms are predicted to form two parallel lines, symmetrically on both sides of the Bi line. Within our local spin-density functional calculations, we find that for the most stable geometries the Fe adatoms exhibit an antiferromagnetic coupling.     

Phase transitions and crystalline structures in neutron star cores

The mixed phase of a fully equilibrated nuclear system that is asymmetric in isospin (i.e. in charge) will develop a geometrical structure of the rarer phase immersed in the dominant one. This happens because the isospin asymmetry energy will exploit the degree of freedom available to a system of more than one independent component (or conserved charge) by rearranging the proportion of charge to baryon number between the two equilibrium phases so as to lower the energy; that is, to effectively reduce the isospin asymmetry in the normal nuclear phase. Consequently, the two phases will have opposite charge; competition between Coulomb and surface energy will be resolved by formation of a Coulomb lattice of the rarer phase situated at sites in the dominant phase. The geometric form, size, and spacing of the phase occupying the lattice sites will depend on the pressure or density of matter. Thus, a neutron star containing a mixed phase region of whatever kind, will have a varying geometric structure of one phase embedded in the other. This is expected to effect transport properties of the star as well as to effect the glitch behavior of pulsars that contain a mixed phase region. We study in particular, the quark deconfinement and kaon condensation phase transitions as examples of this general phenomenon.